EWM29570.1, cds1134 (CDS) Nannochloropsis gaditana

Overview
NameEWM29570.1
Unique Namecds1134
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1276389..1277126 +
Alignment locationCM002456.1:1277294..1277441 +
Alignment locationCM002456.1:1277669..1278159 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29570.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g31.8659.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1276389..1277126 +
CM002456.1supercontigCM002456.1:1277294..1277441 +
CM002456.1supercontigCM002456.1:1277669..1278159 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|585112141|gb|EWM29570.1| (hypothetical protein Naga_100006g31 [Nannochloropsis gaditana])

HSP 1 Score: 920.998 bits (2379), Expect = 0.000e+0
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0
Query:    1 MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPSPPQLSPSPSLHFPRLVPISFLRGFYRVFVSSGCLEGQGRRYVPPSCSEICRRPLPLLPPSLLSLFSCRRSDGHVHAPATGRLGRNKNRASRPVGTHRRRVESGFLPRHPREAL 458
            MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPSPPQLSPSPSLHFPRLVPISFLRGFYRVFVSSGCLEGQGRRYVPPSCSEICRRPLPLLPPSLLSLFSCRRSDGHVHAPATGRLGRNKNRASRPVGTHRRRVESGFLPRHPREAL
Sbjct:    1 MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPSPPQLSPSPSLHFPRLVPISFLRGFYRVFVSSGCLEGQGRRYVPPSCSEICRRPLPLLPPSLLSLFSCRRSDGHVHAPATGRLGRNKNRASRPVGTHRRRVESGFLPRHPREAL 458          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|585112140|gb|EWM29569.1| (hypothetical protein Naga_100006g31 [Nannochloropsis gaditana])

HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0
Identity = 344/346 (99.42%), Postives = 345/346 (99.71%), Query Frame = 0
Query:    1 MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYL-GPS 345
            MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYL GP+
Sbjct:    1 MSRRPAALITPPSASSGHILPHIYHPCPWRRVRMLSTRRAGLGGLSTMFLFNTVRAFLALPSSICPPTSQPYIPSIRSRSMGSAIVSMPRPTSTPSSTPAHTIKMATSSPSTPNPAPPAGIQATTRPRSDTIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLDGPT 346          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1200561428|gb|OUW72662.1| (hypothetical protein CBD70_00895 [Actinobacteria bacterium TMED210])

HSP 1 Score: 166.777 bits (421), Expect = 4.205e-44
Identity = 88/201 (43.78%), Postives = 127/201 (63.18%), Query Frame = 0
Query:  147 TVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRR--DKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPS 345
             +SPS    FKTCP+ ++F +++K+ EP +EV  +G+ VH AL++LF  P E R+ E LH++FR  W K R  D++ +LF S E++R +G+ GLKLL+NY+ +E P    PL RE  +R    D  ++ GILDR+D     GE ++VDYK+GKAP  KY +         +FF LK+YALL+++     P  LKLIYL  S
Sbjct:    4 NLSPSRASQFKTCPKQFKFANVDKLKEPTNEVQAKGTTVHQALEDLFDLPKEDRNXEKLHNLFREAWTKVRGTDEHHDLFSSVEEEREWGVDGLKLLNNYMTIEDPTSFNPLERERWVRGSIED-LNLRGILDRMD-RNEKGELIIVDYKSGKAPMAKYKEP--------RFFALKLYALLIKEELGEMPAELKLIYLKNS 194          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1200575562|gb|OUW86072.1| (hypothetical protein CBD81_00675 [bacterium TMED221])

HSP 1 Score: 164.081 bits (414), Expect = 3.709e-43
Identity = 88/201 (43.78%), Postives = 127/201 (63.18%), Query Frame = 0
Query:  147 TVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVW--LKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPS 345
             +SPS    FKTCP+ ++F +++KI EP + V  +G+ VH AL++L+  P ++R+ EVL+D+FR  W  ++  D+++ LF S ED+R +G  GL LL NYLK+E P + EPL +E  +R    D  ++ GILDR+D E   G  ++VDYK+GKAP  KY +         +FF LK+YALL+      TP  LKLIYL  S
Sbjct:    4 NLSPSRASQFKTCPKQFKFSNVDKIKEPTNLVQAKGTTVHQALEDLYDLPIDQRTPEVLYDLFRKAWSNVRGNDEHVNLFDSIEDEREWGQEGLNLLHNYLKLEDPQKLEPLEQERWVRGSIED-LNLRGILDRMD-EDKDGNLIIVDYKSGKAPMAKYKEP--------RFFALKLYALLIRDEIGVTPKELKLIYLKNS 194          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1082232830|gb|OFW53503.1| (hypothetical protein A2V75_08180 [Actinobacteria bacterium RBG_16_70_17])

HSP 1 Score: 162.155 bits (409), Expect = 4.021e-43
Identity = 92/210 (43.81%), Postives = 129/210 (61.43%), Query Frame = 0
Query:  147 TVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLK-RRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYL-GPSPPQLSPSPS 354
            T+SPS  GDFK CP+L+RFR ++++PEPP+    RG+  H AL  LF  P  +R+ E L+D+FR  W++ R  +Y +LF S E++RA+G+  L++L+NY  VE P+  +PL RE  +     DG ++ GILDR++  P  G   + DYKTGKAP         ER     FF LK YALL+ +   R P  L+LIYL GP   QL  +P+
Sbjct:    5 TLSPSRAGDFKHCPQLFRFRAIDRLPEPPTTYQARGTTSHLALQRLFDLPASQRTPEALYDLFRRAWVEVRGTEYPDLFTSVEEERAWGLESLQILANYFAVEDPSTFDPLAREMDLLEDL-DGITIRGILDRMENTP-DGRLAISDYKTGKAPP--------ERYALPAFFALKTYALLVRRRTGRAPDLLRLIYLNGPVVYQLEVNPA 204          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1082263851|gb|OFW67348.1| (hypothetical protein A2Z12_06495 [Actinobacteria bacterium RBG_16_68_21])

HSP 1 Score: 158.688 bits (400), Expect = 1.007e-41
Identity = 88/201 (43.78%), Postives = 123/201 (61.19%), Query Frame = 0
Query:  147 TVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVWLKRRDKYLE-LFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYL-GPS 345
            T+SPS   DFK CP+L++FR ++++PEP +    RG+  H AL  LF  P E+R+ + L+D+FR  W + R    E LF S ED+RA+G+  L+LL+NY  +E P   +PL RE  M     DG  + GILDR++  P  G  V+ DYKTGKAP  +Y+           FF LK+YALL+ +   RTP  +KL+YL GP+
Sbjct:    5 TLSPSRASDFKHCPQLFKFRAIDRLPEPATVYQARGTTAHLALQRLFDLPAEQRTPDTLYDLFRQAWAEIRGIEFEGLFSSVEDERAWGLESLELLANYFSIEDPTSFDPLDRELDMLEDL-DGIIIRGILDRMEEAP-DGSLVITDYKTGKAPPERYALPA--------FFALKIYALLIRRRTGRTPAEIKLMYLNGPT 195          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1200596495|gb|OUX06068.1| (hypothetical protein CBE04_02620 [Actinobacteria bacterium TMED244])

HSP 1 Score: 155.606 bits (392), Expect = 5.409e-40
Identity = 84/199 (42.21%), Postives = 123/199 (61.81%), Query Frame = 0
Query:  149 SPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVW--LKRRDKYLELFPSTEDQRAFGMAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLGPS 345
            SPS    F TCP+ ++F +++KI EP + V  +G+ VH A ++L+S P E+R+ + L+++FR  W  ++  D+++ LF S E++R +G  GL LL NYLK+E P   EPL +E  +R    D  ++ GILDR+D E   G  V+VDYK+GK+P  KY +         +FF LK+YALL+      TP  LKLIYL  S
Sbjct:    6 SPSRASQFXTCPKQFKFSNVDKIKEPTNLVQAKGTTVHQAXEDLYSLPSEERTSDTLYNLFRKAWSNVRGNDEHVNLFNSIEEEREWGQEGLNLLHNYLKLENPKTLEPLEQERWVRGSIED-LNLRGILDRMD-EDKDGNLVIVDYKSGKSPLAKYKEP--------RFFALKLYALLIRDELGVTPVELKLIYLKNS 194          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1155045427|ref|WP_078950466.1| (recombinase RecB [Streptomyces lavendulae])

HSP 1 Score: 146.747 bits (369), Expect = 5.257e-37
Identity = 88/221 (39.82%), Postives = 123/221 (55.66%), Query Frame = 0
Query:  131 TIDPSAYIAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVW---LKRRDKYLELFPSTEDQRAFGMA-----GLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLG 343
            T  P A  +P+   PT++SPS  GDF  CP LYRFR ++K+PE PS    RG++VH  L+ LF  P  +R+  V   +    W   L+ + +  ELFP  E     G+A        L+  +  +E P   EP+ REF +      G  + GI+DRVDV P SGE  +VDYKTGKAP  +Y++           FQ+K YAL++ ++KQ  P RL+L+YLG
Sbjct:    2 TTIPGADPSPAAARPTSLSPSRAGDFMQCPLLYRFRVIDKLPEKPSAAATRGTLVHAVLERLFDHPAAERTAPVAKALVPGQWDRLLQAKPELAELFP--EGDEGAGLARWLTEAEALVERWFTLEDPTRLEPVEREFFVETELESGLRLRGIIDRVDVAP-SGEVRIVDYKTGKAPRPEYAEGA--------LFQMKFYALVVWRLKQVVPRRLQLVYLG 211          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1158991215|ref|WP_079161029.1| (recombinase RecB [Streptomyces sp. NRRL S-98])

HSP 1 Score: 144.821 bits (364), Expect = 2.273e-36
Identity = 85/216 (39.35%), Postives = 120/216 (55.56%), Query Frame = 0
Query:  139 APSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVW---LKRRDKYLELFPSTEDQRAFGMAGL--------KLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLG 343
            +PS   P+++SPS   DF  CP LYRFR ++K+PE PS    RG++VH  L+ LF  P ++R+     ++    W   L  R +  ELFP  +     G AGL         L+  +  +E P   EP+ REF +      G  + GI+DRVDV P +GE  +VDYKTGKAP  +Y+D           FQ+K YAL++ ++KQ  P RL+L+YLG
Sbjct:   16 SPSAVAPSSLSPSRASDFMQCPLLYRFRVIDKLPEKPSAAATRGTLVHAVLERLFDHPAQERTAPRAKELIPGQWDRLLGSRPELAELFPEGD-----GGAGLARWLTEAEALVERWFTLEDPTRLEPVEREFFVETELESGLRLRGIIDRVDVAP-TGEVRIVDYKTGKAPRAEYADGA--------LFQMKFYALVVWRLKQVVPRRLQLVYLG 217          
BLAST of EWM29570.1 vs. NCBI_GenBank
Match: gi|1155054397|ref|WP_078959436.1| (recombinase RecB [Streptomyces erythrochromogenes])

HSP 1 Score: 145.591 bits (366), Expect = 2.627e-36
Identity = 82/212 (38.68%), Postives = 120/212 (56.60%), Query Frame = 0
Query:  138 IAPSVGLPTTVSPSSLGDFKTCPRLYRFRHLEKIPEPPSEVMVRGSMVHDALDELFSQPPEKRSKEVLHDIFRAVW---LKRRDKYLELFPSTEDQRAFG---MAGLKLLSNYLKVETPAEQEPLMREFRMRVPFPDGPSVTGILDRVDVEPGSGEWVVVDYKTGKAPALKYSDAVNERIMNDKFFQLKVYALLLEQVKQRTPTRLKLIYLG 343
            +APS   P+++SPS   DF  CP LYRFR ++K+PE PS    RG++VH  L+ LF  P ++R+     ++    W   L+ R +  ELFP  ++  A          L+  +  +E P   EP+ REF +      G  + GI+DRVDV P +GE  +VDYKTGKAP  +Y++           FQ+K YAL++ ++KQ  P RL+L+YLG
Sbjct:   28 VAPSAVAPSSLSPSRASDFMQCPLLYRFRVIDKLPEKPSAAATRGTLVHAVLERLFDHPAQERTAPRAKELIPGQWDRLLESRPELTELFPEGDEGAALARWLTEAEALVERWFTLEDPTRLEPVEREFFVETELESGLRLRGIIDRVDVAP-TGEVRIVDYKTGKAPRPEYAEGA--------LFQMKFYALVVWRLKQVVPRRLQLVYLG 230          
The following BLAST results are available for this feature:
BLAST of EWM29570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112141|gb|EWM29570.1|0.000e+0100.00hypothetical protein Naga_100006g31 [Nannochlorops... [more]
gi|585112140|gb|EWM29569.1|0.000e+099.42hypothetical protein Naga_100006g31 [Nannochlorops... [more]
gi|1200561428|gb|OUW72662.1|4.205e-4443.78hypothetical protein CBD70_00895 [Actinobacteria b... [more]
gi|1200575562|gb|OUW86072.1|3.709e-4343.78hypothetical protein CBD81_00675 [bacterium TMED22... [more]
gi|1082232830|gb|OFW53503.1|4.021e-4343.81hypothetical protein A2V75_08180 [Actinobacteria b... [more]
gi|1082263851|gb|OFW67348.1|1.007e-4143.78hypothetical protein A2Z12_06495 [Actinobacteria b... [more]
gi|1200596495|gb|OUX06068.1|5.409e-4042.21hypothetical protein CBE04_02620 [Actinobacteria b... [more]
gi|1155045427|ref|WP_078950466.1|5.257e-3739.82recombinase RecB [Streptomyces lavendulae][more]
gi|1158991215|ref|WP_079161029.1|2.273e-3639.35recombinase RecB [Streptomyces sp. NRRL S-98][more]
gi|1155054397|ref|WP_078959436.1|2.627e-3638.68recombinase RecB [Streptomyces erythrochromogenes][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1135rna1135Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications