rna1131, rna1131 (mRNA) Nannochloropsis gaditana

Overview
Namerna1131
Unique Namerna1131
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1407
Alignment locationCM002456.1:1264788..1266135 +

Link to JBrowse

Properties
Property NameValue
Product3-hydroxybutyryl- dehydratase
Orig transcript idgnl|cribi|Naga_100006g36.8605.mrna
Orig protein idgnl|cribi|Naga_100006g36.8605
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1264788..1266135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g36gene1090Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1131rna1131-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29516.1cds1130Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1131 ID=rna1131|Name=rna1131|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp
ATGGTATTGTCGCGCGGCTTTTTATTTGACGCCATTGTCATCCTTTTCAT
CGCTTGCCTTTGTCTGGCCCCTTCAACAGCAAACGAAGTATTTGCTTCTA
GCTCAGCAGGCCTTGCTATATCTAGCTTACTGAACCCATCACGCTTCAAT
CAAGAATACCACTCGGCCCATCACATTGAGGGAAAAATGAACTCTGTCCT
CGCCGTTGACGTGGATGTCGCGCACAACGCGGTCACCAAAAGCTGCTCAT
CTATTTCAAATCAAAATCGCAATTCCGAGTCTTCTCTTTCGCTTCTTTCG
ACCCATCCCGTGCCGCTCTGCGCGCCTTCTTCGTCTCCTTCTGCTCTCGA
GGCCCTGCTCACCGGCAGCAAACTCATGGGCAGCATGCTGAACAAAATTC
GCGGAGGCGGAGCGATCTCAGAGGCTCGCACTGTGAATGGGAGCGGGACA
TGCAAAGGGGCGTTAGTAAGCACTCATGCGAAAGGCACCGTCCTTACACT
CAGTTATTTTGCCTTGTGGTTCGCACTGAACGTCTACTACAACATTGTAA
ACAAGCGAGTTCTCAATGCTCTCCCTCTACCTTTCACGGTTGCAACGGCT
CAGCTGGGTATTGGTGCTGTCTACGTCTCCCTATCTTGGCTTCTTCGCGT
CCGTGCTTCCCCCCAAATCAGCACGACCGGCTTCAAGGACCTCCTCTCCA
TCGCTTTCTACCATGGCTCCGGCCAACTGTTCACAGTACTGAGTCTTGGC
GCCGCCGCAGTCAGCTTCACGCATATAGTTAAGGCTCTGGAGCCTTTTTT
CTCTGCCCTTGTCGCTGCTGTGTGCTTCAAGCAGGTTTTCAAACCTCAAG
TCTACTTGAGCCTCCTCCCAGTCGTGTCAGGGGTGGCAGTTGCGTGTGCC
AATGACGTGTCTTTTGGGTGGCTTGCGTTCTTGACGGCCATGGCTTCCAA
TCTGGCCTTTGCTCTGCGTGCCAACTTTTCCAAAGGCGCGCTGTCCCGCT
ACCGGAAAGAAGGGAAGAGCAGCATGTCGCCCGCGAACGTCTATGGTCTC
GTGACCATCCTCGCGTTTTTCCTCCTCCTTCCCCTGACGTGTCTGTGGGA
AGGGGTCGACTGGCGGCCATCATGGCGTGTAGCGACCGAAAAAATAGAAG
GCACCACCCTTGTTCACCAATTGCTCCTGAGTGGCCTTTTCCATTACCTG
AACAACGAGGTCATGTACTTGGCCCTGGATAACGTGCACCCCATCACCTT
GGCCGTGGGCAACACCGCCAAGCGCGTCTTCATTATAGTGGCGAGCCTTT
TGGTCTTTCGGAACCCGATAACGCTGACAGGGGCGGTGGGCTCGGGAGTA
GGCATAGCGGGGGTGCTGATATACAGCCTGACTAAACAGTATTATGACAC
GCATTAA
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protein sequence of rna1131

>rna1131-protein ID=rna1131-protein|Name=rna1131|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MALRLAAVLTKSSGRPLPSLRKLRPRFMATTPTSFKTGKPHGPMHQRGEY
LEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTA
APVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAV
HRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGA
GGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEEL
AQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEA
LQAFEEKRKPTFRGR
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mRNA from alignment at CM002456.1:1264788..1266135+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1131 ID=rna1131|Name=rna1131|organism=Nannochloropsis gaditana|type=mRNA|length=1348bp|location=Sequence derived from alignment at CM002456.1:1264788..1266135+ (Nannochloropsis gaditana)
GTAGCTGACCGTTCATACCTCTCAtcgcaacctcctcccctttccctctc
ccacttATTATGTGGCGTTAGGCAAACATCATGGCGCTTCGATTGGCAGC
AGTTTTGACGAAGTCGTCGGGTAGACCACTGCCATCTTTGCGCAAACTAC
GTCCACGCTTCATGGCGACGACCCCTACAAGTTTCAAGACCGGCAAACCC
CATGGTCCTATGCACCAACGCGGGGAGTACCTTGAAGAACCGCCCCGCAA
TCTTAAAGACCTTGAATTTTCTTTGAAAAATGGCGTAGCTACGATTAAAT
TGGATCGACCTCATCGCTTGAACGCCTTGAGCGAAGATATGGCCGAAAGC
TTGATGCGCTTATGCGAATACATGACCGCAGCTCCTGTTGAGAAGGTACG
CGTTTGTGTTGTGACGGGTGGAACACGAGCTTTTTCCACAGGACGGGACC
TCAAGGATTCGAAGCTACACACGACtttggagaagagggagcgatACATG
AAGCTGGCCTTAGATTCTGTCATGGCAGTACATCGTCTGGTacgaggggg
gagtgagAAGACCAGTCTATGGAGGCATGCTGCTCTCTAGTTCACCTCCT
CTCAGCCGCTCACTTTCTCCGGCGCCTTTTGCACTTTCTATCCTTCTCTC
TGTACTCCTTCTCCCGGCATGTGCGATGGACCAGCCACTCCCAACCATCG
CCTGCCTCTCCGGTCCTGCCTTTGGGTGGGGTCTCGAACTTGCCCTTGCC
TGTGACCTTCGTGTAGCCCAcccggcctccctgctcTGTCTGCCTGAAAC
CTCCTTGGGCATTTTCCCGGGCGCCGGAGGCGTTGTCCTTTTGCGTGAAG
TCGTCTCGCCTTCCATCGCCAAGGATTTGATTTTTACCGCGCGGCGTTTT
TCGGGCACTGACGCCCTATCTTTGGGGGTCGTGAACCGAGTTTCCCCGAA
CGTGGAGGAAAATGCCGAAGAGCTTGCGCAATGCATCGCAGAGAACGGTC
CGTTGGGTGTGCGGGGGGCGAAAGAAGTGATGGAGGGTGCGCACAATGTG
GATTTCGGGACTGCTATGGCCCTGGCACGCCAGCTCCGCGCCCCCCTGTC
GGAGACGGAAGATTTCAAGGAAGCTTTGCAGGCGttcgaggaaaaaagaa
agccgACATTTCGAGGGCGGTAAAGACGGGGGaggcaaaaaagaaaagag
agggtgCTGTACGTGAGTCGGACATAGGTGGGTGTGGGAgcggggtggga
aagaaggctAAGAGACGCGGGGCGACGCGGGCTTTGTCAACTTGCTTTAT
CCAGGAAGGGTTAGGATGCGTGGTCGAGCAAGAAAAATTTATTCAGGA
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Coding sequence (CDS) from alignment at CM002456.1:1264788..1266135+

>rna1131 ID=rna1131|Name=rna1131|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002456.1:1264788..1266135+ (Nannochloropsis gaditana)
ATGGCGCTTCGATTGGCAGCAGTTTTGACGAAGTCGTCGGGTAGACCACT
GCCATCTTTGCGCAAACTACGTCCACGCTTCATGGCGACGACCCCTACAA
GTTTCAAGACCGGCAAACCCCATGGTCCTATGCACCAACGCGGGGAGTAC
CTTGAAGAACCGCCCCGCAATCTTAAAGACCTTGAATTTTCTTTGAAAAA
TGGCGTAGCTACGATTAAATTGGATCGACCTCATCGCTTGAACGCCTTGA
GCGAAGATATGGCCGAAAGCTTGATGCGCTTATGCGAATACATGACCGCA
GCTCCTGTTGAGAAGGTACGCGTTTGTGTTGTGACGGGTGGAACACGAGC
TTTTTCCACAGGACGGGACCTCAAGGATTCGAAGCTACACACGACtttgg
agaagagggagcgatACATGAAGCTGGCCTTAGATTCTGTCATGGCAGTA
CATCGTCTGCCACTCCCAACCATCGCCTGCCTCTCCGGTCCTGCCTTTGG
GTGGGGTCTCGAACTTGCCCTTGCCTGTGACCTTCGTGTAGCCCAcccgg
cctccctgctcTGTCTGCCTGAAACCTCCTTGGGCATTTTCCCGGGCGCC
GGAGGCGTTGTCCTTTTGCGTGAAGTCGTCTCGCCTTCCATCGCCAAGGA
TTTGATTTTTACCGCGCGGCGTTTTTCGGGCACTGACGCCCTATCTTTGG
GGGTCGTGAACCGAGTTTCCCCGAACGTGGAGGAAAATGCCGAAGAGCTT
GCGCAATGCATCGCAGAGAACGGTCCGTTGGGTGTGCGGGGGGCGAAAGA
AGTGATGGAGGGTGCGCACAATGTGGATTTCGGGACTGCTATGGCCCTGG
CACGCCAGCTCCGCGCCCCCCTGTCGGAGACGGAAGATTTCAAGGAAGCT
TTGCAGGCGttcgaggaaaaaagaaagccgACATTTCGAGGGCGGTAAAT
GGCGCTTCGATTGGCAGCAGTTTTGACGAAGTCGTCGGGTAGACCACTGC
CATCTTTGCGCAAACTACGTCCACGCTTCATGGCGACGACCCCTACAAGT
TTCAAGACCGGCAAACCCCATGGTCCTATGCACCAACGCGGGGAGTACCT
TGAAGAACCGCCCCGCAATCTTAAAGACCTTGAATTTTCTTTGAAAAATG
GCGTAGCTACGATTAAATTGGATCGACCTCATCGCTTGAACGCCTTGAGC
GAAGATATGGCCGAAAGCTTGATGCGCTTATGCGAATACATGACCGCAGC
TCCTGTTGAGAAGGTACGCGTTTGTGTTGTGACGGGTGGAACACGAGCTT
TTTCCACAGGACGGGACCTCAAGGATTCGAAGCTACACACGACtttggag
aagagggagcgatACATGAAGCTGGCCTTAGATTCTGTCATGGCAGTACA
TCGTCTGCCACTCCCAACCATCGCCTGCCTCTCCGGTCCTGCCTTTGGGT
GGGGTCTCGAACTTGCCCTTGCCTGTGACCTTCGTGTAGCCCAcccggcc
tccctgctcTGTCTGCCTGAAACCTCCTTGGGCATTTTCCCGGGCGCCGG
AGGCGTTGTCCTTTTGCGTGAAGTCGTCTCGCCTTCCATCGCCAAGGATT
TGATTTTTACCGCGCGGCGTTTTTCGGGCACTGACGCCCTATCTTTGGGG
GTCGTGAACCGAGTTTCCCCGAACGTGGAGGAAAATGCCGAAGAGCTTGC
GCAATGCATCGCAGAGAACGGTCCGTTGGGTGTGCGGGGGGCGAAAGAAG
TGATGGAGGGTGCGCACAATGTGGATTTCGGGACTGCTATGGCCCTGGCA
CGCCAGCTCCGCGCCCCCCTGTCGGAGACGGAAGATTTCAAGGAAGCTTT
GCAGGCGttcgaggaaaaaagaaagccgACATTTCGAGGGCGGTAA
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Synonyms
Publications