EWM29516.1, cds1130 (CDS) Nannochloropsis gaditana

Overview
NameEWM29516.1
Unique Namecds1130
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1264868..1265326 +
Alignment locationCM002456.1:1265472..1265960 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29516.1
Product3-hydroxybutyryl- dehydratase
Orig transcript idgnl|cribi|Naga_100006g36.8605.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1264868..1265326 +
CM002456.1supercontigCM002456.1:1265472..1265960 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR014748Crontonase_C
IPR001753Crotonase_core_superfam
IPR029045ClpP/crotonase-like_dom
Homology
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|585112087|gb|EWM29516.1| (3-hydroxybutyryl- dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MALRLAAVLTKSSGRPLPSLRKLRPRFMATTPTSFKTGKPHGPMHQRGEYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRGR 315
            MALRLAAVLTKSSGRPLPSLRKLRPRFMATTPTSFKTGKPHGPMHQRGEYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRGR
Sbjct:    1 MALRLAAVLTKSSGRPLPSLRKLRPRFMATTPTSFKTGKPHGPMHQRGEYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRGR 315          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|1084167930|gb|OGL62713.1| (hypothetical protein A3I72_00995 [Candidatus Tectomicrobia bacterium RIFCSPLOWO2_02_FULL_70_19] >gi|1084172819|gb|OGL67121.1| hypothetical protein A3J27_11585 [Candidatus Tectomicrobia bacterium RIFCSPLOWO2_12_FULL_69_37])

HSP 1 Score: 221.861 bits (564), Expect = 8.085e-68
Identity = 119/263 (45.25%), Postives = 166/263 (63.12%), Query Frame = 0
Query:   54 PPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPN--VEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
            P R  K++ +  ++G+A + L RP RLNAL  ++AE +  L   +  A  + VR  ++TG  RAF TGRDLK+S  HT  E+ +RY  + ++ V     LP+PT+A ++GP FG+G+E+ALACD+R+A   + LC PE +LGIFPGAGG V L   + P +A +LIFTA+R  G +A  +G V+R  P   +   A  LA  I +NGPLGVR AK+V+  A  +    A+  +   R PL+ T+DF EAL AF EKRKP FRG
Sbjct:    2 PVRAFKEIRYEEESGLAAVTLSRPERLNALGMNLAEEICALSREL--AGEKDVRAVLLTGEGRAFCTGRDLKESAAHTK-EQADRYQLIGMECVTLWEALPMPTVAAINGPCFGFGMEIALACDIRLAAEDATLCFPECALGIFPGAGGTVRLPRAIPPGLAMELIFTAKRLDGREAERIGFVSRAHPKERLMAEARSLAGQIRDNGPLGVRAAKKVIRHAAEMPLPQAIEFSNANRLPLNYTQDFAEALAAFREKRKPVFRG 261          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|935410973|ref|WP_054392435.1| (enoyl-CoA hydratase [Thermus scotoductus] >gi|928533645|gb|KPD25941.1| enoyl-CoA hydratase [Thermus scotoductus])

HSP 1 Score: 183.726 bits (465), Expect = 7.400e-53
Identity = 110/259 (42.47%), Postives = 148/259 (57.14%), Query Frame = 0
Query:   57 NLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKD-SKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
              + L + ++ G+A + L RP  LNALS+D+ + L  + E +   P  +VRV + TG  +AF+ G DLK+   L      RE Y  L       +  LPLPTIA ++G A G GLELALACDLRVA   + L LPE  LG+ PG GG   L  ++    A DLIFT R  S  +ALSLG+VNRV  +  E A++LAQ I +N P+ +  AKE +     +D   A+ +   L    S TED KE ++AF EKR P F+G
Sbjct:   17 EFEHLSYEVEEGIALVTLRRPEALNALSQDLLQELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIVALKDPFMARE-YALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKILKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|655045551|ref|WP_028494179.1| (enoyl-CoA hydratase [Thermus antranikianii])

HSP 1 Score: 183.726 bits (465), Expect = 7.642e-53
Identity = 112/267 (41.95%), Postives = 154/267 (57.68%), Query Frame = 0
Query:   49 EYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKD-SKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
            E++ E P   + L + ++ G+A + L RP  LNALS+D+ + L  + E +   P  +VRV + TG  +AF+ G DLK+ + L      RE Y  L       +  LPLPTIA ++G A G GLELALACDLRVA   + L LPE  LG+ PG GG   L  ++    A DLIFT R  S  +ALSLG+VNRV  +  E A++LA+ I +N P+ +  AKE +     +D   A+ +   L    S TED KE ++AF EKR P F+G
Sbjct:   10 EFILEIP-EFEHLSYEVEEGIALVTLRRPEALNALSQDLLQELAEVTEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIAALKDPFMARE-YALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLARKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|518380041|ref|WP_019550248.1| (MULTISPECIES: 3-hydroxybutyryl-CoA dehydratase [Thermus] >gi|568398882|gb|ETN88430.1| 3-hydroxybutyryl-CoA dehydratase [Thermus sp. NMX2.A1])

HSP 1 Score: 183.726 bits (465), Expect = 8.329e-53
Identity = 110/259 (42.47%), Postives = 148/259 (57.14%), Query Frame = 0
Query:   57 NLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKD-SKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
              + L + ++ G+A + L RP  LNALS+D+   L  + E +   P  +VRV + TG  +AF+ G DLK+ + L      RE Y  L       +  LPLPTIA ++G A G GLELALACDLRVA   + L LPE  LG+ PG GG   L  ++    A DLIFT R  S  +ALSLG+VNRV  +  E A++LAQ I +N P+ +  AKE +     +D   A+ +   L    S TED KE ++AF EKR P F+G
Sbjct:   17 EFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIAALKDPFMARE-YALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|740230259|ref|WP_038071525.1| (enoyl-CoA hydratase [Thermus scotoductus])

HSP 1 Score: 182.956 bits (463), Expect = 1.396e-52
Identity = 110/259 (42.47%), Postives = 148/259 (57.14%), Query Frame = 0
Query:   57 NLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKD-SKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
              + L + ++ G+A + L RP  LNALS+D+   L  + E +   P  +VRV + TG  +AF+ G DLK+ + L      RE Y  L       +  LPLPTIA ++G A G GLELALACDLRVA   + L LPE  LG+ PG GG   L  ++    A DLIFT R  S  +ALSLG+VNRV  +  E A++LAQ I +N P+ +  AKE +     +D   A+ +   L    S TED KE ++AF EKR P F+G
Sbjct:   17 EFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIAALKDPFMARE-YALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRPPQFKG 272          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|505919463|ref|WP_015716466.1| (3-hydroxybutyryl-CoA dehydratase [Thermus scotoductus] >gi|320149806|gb|ADW21184.1| 3-hydroxybutyryl-CoA dehydratase [Thermus scotoductus SA-01])

HSP 1 Score: 182.57 bits (462), Expect = 1.788e-52
Identity = 110/259 (42.47%), Postives = 147/259 (56.76%), Query Frame = 0
Query:   57 NLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKD-SKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
              + L + ++ G+A + L RP  LNALS+D+   L  + E +   P  +VRV + TG  +AF+ G DLK+   L      RE Y  L       +  LPLPTIA ++G A G GLELALACDLRVA   + L LPE  LG+ PG GG   L  ++    A DLIFT R  S  +ALSLG+VNRV  +  E A++LAQ I +N P+ +  AKE +     +D   A+ +   L    S TED KE ++AF EKR P F+G
Sbjct:   17 EFEHLSYEVEEGIALVTLRRPEALNALSQDLLRELAEVAEVIHQDP--EVRVAIFTGEGKAFAAGADLKEIVALKDPFMARE-YALLGQQVFAEIAALPLPTIAAINGYALGGGLELALACDLRVASREAKLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVSAEEALSLGLVNRVGEDALEEAKKLAQKIMKNAPIALALAKESVVRGEGLDLAEALEIEADLFGYASATEDMKEGVRAFLEKRAPNFKG 272          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|1086432416|emb|SDH91976.1| (Enoyl-CoA hydratase/carnithine racemase [Alteribacillus persepolensis])

HSP 1 Score: 182.185 bits (461), Expect = 2.136e-52
Identity = 106/255 (41.57%), Postives = 151/255 (59.22%), Query Frame = 0
Query:   66 KNG-VATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEK-VRVCVVTG-GTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPN--VEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRGR 315
            +NG +ATI ++RP +LN    D   +L++L E + +  +++ VR  ++TG G +AFS G DLK+ +     E R    K+  D    +  LP PTIA ++G A G G ELALACD R+A   + L LPE S+ I PGAGG   L +++ PS AK+LI TARR    ++  +G++N+  P   + E A ELA  I +NGPL V  AK  ++   NVD  T MA+  +    +  TED  EAL+AF EKR P F+G+
Sbjct:    8 QNGHLATITINRPDQLNCFDYD---TLLQLEEQVKSIQLDREVRAVIITGAGEKAFSAGADLKERRTLGEKEVRRNVNKIR-DVFALIEELPQPTIAVVNGYALGGGFELALACDFRIAKETAKLGLPEVSMAIIPGAGGTQRLTQLIGPSKAKELILTARRIDALESEKIGIINQAVPQEKLMETAHELADEIMQNGPLAVIQAKHAIQQGSNVDIHTGMAIESKAYEVIIPTEDRVEALEAFREKRAPNFKGK 258          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|551068695|ref|WP_022799198.1| (3-hydroxybutyryl-CoA dehydratase [Thermus islandicus])

HSP 1 Score: 182.185 bits (461), Expect = 3.061e-52
Identity = 112/276 (40.58%), Postives = 152/276 (55.07%), Query Frame = 0
Query:   40 PHGPMHQRGEYLEEPPRNLKDLEFSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKD-SKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEENAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
            P    H+    LE P      L + ++ G+A + L RP  LNALS+D+ + L ++ E +   P  + RV + TG  +AF+ G DLK+ + L      RE Y  L       +  LP+PTIA + G A G GLELALACDLRVA   + L LPE  LG+ PG GG   L  ++    A DLIFT R     +AL LG+VNRV+ N  E A+ LA+ I +NGP+ +  AKE +     VD   A+ +   L    + TED KE ++AF EKR P F+G
Sbjct:    2 PQEDAHEHEFVLEIP--EFTHLAYEVEEGIALVTLRRPQALNALSQDLLQELAQVAEVIHQDP--EARVAIFTGEGKAFAAGADLKEIAALKDPFAARE-YALLGQQVFAEIAALPIPTIAAIHGYALGGGLELALACDLRVAAKGARLGLPEVGLGLIPGFGGTQRLPRLIGRGRALDLIFTGRHVDAEEALFLGLVNRVAENALEEAKRLARQILKNGPVALALAKESVVRGEGVDLAEALEIEADLFGYAAATEDMKEGVRAFLEKRPPNFKG 272          
BLAST of EWM29516.1 vs. NCBI_GenBank
Match: gi|653174072|ref|WP_027417043.1| (enoyl-CoA hydratase [Aneurinibacillus terranovensis])

HSP 1 Score: 181.415 bits (459), Expect = 3.745e-52
Identity = 106/255 (41.57%), Postives = 148/255 (58.04%), Query Frame = 0
Query:   63 FSLKNGVATIKLDRPHRLNALSEDMAESLMRLCEYMTAAPVEKVRVCVVTGGTRAFSTGRDLKDSKLHTTLEKRERYMKLALDSVMAVHRLPLPTIACLSGPAFGWGLELALACDLRVAHPASLLCLPETSLGIFPGAGGVVLLREVVSPSIAKDLIFTARRFSGTDALSLGVVNRVSPNVEE---NAEELAQCIAENGPLGVRGAKEVMEGAHNVDFGTAMALARQLRAPLSETEDFKEALQAFEEKRKPTFRG 314
            F+ +N +ATI L+RP+ LNA + +    L  + E +   P + +R  +VT   RAFS G DLK+ +  T  + R    K+  D   A+ R+P PTIA ++G AFG G ELALACD R A   + + L E SLGI PGAGG   L  ++ PS AK+LI TAR+ S  +A   G++N V+ N++E    A  LA+ I +N PL V  AK  ++    VD  T + +  +    +  T+D  EAL+AF EKRKP FRG
Sbjct:    8 FTCENHMATITLNRPNELNAFNYETLVRLQEIIEEIRQDP-KNIRAVIVTAEGRAFSAGADLKERRTLTEQQVRRNVRKIR-DVFTALERIPQPTIAAINGYAFGGGFELALACDFRFAVRDAKMGLTEVSLGIIPGAGGTQRLTRLIGPSQAKELILTARKISAEEAWEKGILNGVTDNLQELHRRAYSLAEEILQNAPLAVNQAKYAIDKGIGVDLQTGLDIEAKAYEVIIPTKDRVEALEAFREKRKPVFRG 260          
The following BLAST results are available for this feature:
BLAST of EWM29516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112087|gb|EWM29516.1|0.000e+0100.003-hydroxybutyryl- dehydratase [Nannochloropsis gad... [more]
gi|1084167930|gb|OGL62713.1|8.085e-6845.25hypothetical protein A3I72_00995 [Candidatus Tecto... [more]
gi|935410973|ref|WP_054392435.1|7.400e-5342.47enoyl-CoA hydratase [Thermus scotoductus] >gi|9285... [more]
gi|655045551|ref|WP_028494179.1|7.642e-5341.95enoyl-CoA hydratase [Thermus antranikianii][more]
gi|518380041|ref|WP_019550248.1|8.329e-5342.47MULTISPECIES: 3-hydroxybutyryl-CoA dehydratase [Th... [more]
gi|740230259|ref|WP_038071525.1|1.396e-5242.47enoyl-CoA hydratase [Thermus scotoductus][more]
gi|505919463|ref|WP_015716466.1|1.788e-5242.473-hydroxybutyryl-CoA dehydratase [Thermus scotoduc... [more]
gi|1086432416|emb|SDH91976.1|2.136e-5241.57Enoyl-CoA hydratase/carnithine racemase [Alteribac... [more]
gi|551068695|ref|WP_022799198.1|3.061e-5240.583-hydroxybutyryl-CoA dehydratase [Thermus islandic... [more]
gi|653174072|ref|WP_027417043.1|3.745e-5241.57enoyl-CoA hydratase [Aneurinibacillus terranovensi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1131rna1131Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications