rna113, rna113 (mRNA) Nannochloropsis gaditana

Overview
Namerna113
Unique Namerna113
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1096
Alignment locationCM002455.1:300042..302333 -

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Properties
Property NameValue
Productconserved uncharacterized protein
Orig transcript idgnl|cribi|Naga_100033g38.8389.mrna
Orig protein idgnl|cribi|Naga_100033g38.8389
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:300042..302333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g38gene110Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30550.1cds113Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna113rna113-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna113 ID=rna113|Name=rna113|organism=Nannochloropsis gaditana|type=mRNA|length=1096bp
CTCATTCGGTCGATGACCGGGTGGCAGTCGTGTGCTACACAGATGCTCAT
TTTCTCCTCATAACTTCATTGCCAGGATCCCTCTTACCGCTGCCTAGTCA
CGATGAAGGTTATGATCTCGGGCTGGACTCTTCTCTTCCTGCCCTGTGCT
TCCTCCTTCCTCGCCCCCTCGACGCTTGCAATCACGAACAAAAAGGATGC
CATAGTGCTAAATGAGAAAGGTAGCCCGACTGTGTTGGAGGCTGAGGGTG
GCATGTCGAGAAGAGACGCGTTGTTCAAGACAGCGGGTCTGCTCTCTCTC
GGACTAGCAATGGGTAGCTCGAGGGGGCTCATCTCGCTGCCACGAGCAGG
TGCAGAGACACTTCCCGGTGGCATCACGTACGAGGTATTGGAAAAAGGTA
ATGGCCCCATACCCCAAGTGGGCGAATTGGCTGCTATTCGCTTTACAGGC
GCCTACAAGGACAACGTGTTCGACGACTTATACAAGACCAAAGAACCTTT
ATACTTCCGCGTGGGCGGCAACACACTCCTGAAAGGTATCGAAGAGGCCG
TCAAGGTGATGAAAGTGGGTGACCGCTGGAAACTTACAATCCCGGGTGAG
CTTGCCTTCGGCGCCAAGGGTCGCTCAGCTTCCCCCGGTAAGCCTCGCAT
TCCCCCCATGGCACCGGTCGAGTACGACCTGACCCTCGTGGCGCTGCCTG
GAAGGGAAACAGAGGTCATAGACCTGGACAGTTTCGATGAAAACGCGCCA
GCATCGGACGATTCGGATCCGAACAAAGGGTTGCGCTTTTAATTGGGAGG
GGATCCTTGGTCTTACGTGCGCGAGCGGAAAACGTGCGTGTCCTTTCAAA
GGGCGAGCGAAGGGCTTACATGCGGAGGGAGGCACAGCTTGTAAGTTACC
TTGAAAAGGATTTTGCCCCCCTCGGCAGCTGTCATAGTTTCGCTCGTTTC
GTGTGGCGTTGGAAGAATATTTTTCGGCAGCTGTCATAGTTTCGCTCGTT
TCGTGTGGCGTTGGAAGAATATTTTTCCGTACGACCTACCCAAAGCCATT
GCTCGGTATTAAAACCCAAAAAAATAACCTCAATGCCTTCCAACGT
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protein sequence of rna113

>rna113-protein ID=rna113-protein|Name=rna113|organism=Nannochloropsis gaditana|type=polypeptide|length=670bp
MSRTPYLSATADGTNNTTNAVANTAKLSEEKSTRSIEQSSIGTAHRRGTL
DILQHDKYALAAFLFRTSLVLAIAWYLNPERIPYCQCLARILLLQIWEWS
DAELPGAVAHFLVLFKEILRSLSLFLLTLSATCFCAACYQSTRADSSSKL
LENLTDPQRRLLGLENVQPKIDQKTPRVEVAEMPTPLEKGSFTPLVSPSH
PPSSAGKGRLPLVDTTGGPSVESSSSQYLTPPPSMYRARATPTKVALFPS
GGSGGDKGRPPRRKSGGDGAVSFGESADVKMKGLLDEMLVAADGTPVSGQ
QLTPQGRGLSASKGAHQFLSNVPISPLTNEVVGPYRESALGGAGGGLLGG
PSGSPTERWDVREWPQILQHRIGGGLDVYKLSNYVDNLRETLYTEIIDLL
TRFNAAVVALERCGVPLDLLLGEVNSTPSGLGLEDYLNQARGQWEKEVQE
YTGLKRVLSEGEGWMDRFGHIYRRLGAMVQDSYLSSYEWSRGGVLRHRNV
TVELPTDADLIMHVFLWRCDAMAEHRLHGGDRPFVKQHFLEVPPGTEESS
RSLRGRNLIMRHGTSPPYFSVVENGLVHRIPTGKDNALVAIVVFLFLARR
DRWLPKYNPGYRRLLEGVFGSAVHPEGGARGDKGGQKEDGKRGDKAFGLP
DASKRKSDGDRDGSPEVEGR
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mRNA from alignment at CM002455.1:300042..302333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna113 ID=rna113|Name=rna113|organism=Nannochloropsis gaditana|type=mRNA|length=2292bp|location=Sequence derived from alignment at CM002455.1:300042..302333- (Nannochloropsis gaditana)
ACAAGAATTTACAGAGGTTGACTGAATTTAAGAGCTAGCCAGTATTTGAA
AGCCATCCGTTCTGCCTCCTGTAGGACACCTGCCCTCTTCATGTCCCGTA
CTCCTTACCTCTCGGCGACGGCAGACGGCACTAATAATACAACCAACGCT
GTCGCAAACACCGCCAAATTGTCGGAGGAGAAGTCAACGCGTAGTATTGA
GCAGTCTTCCATTGGTACTGCCCATCGGAGGGGAACTTTGGACATCTTAC
AGCATGACAAATACGCCTTAGCCGCGTTCCTTTTCCGCACCTCTTTGGTC
CTCGCTATTGCCTGGTATCTCAACCCCGAGCGCATACCGTACTGCCAATG
TTTGGCGCGCATTCTCCTCTTGCAAATATGGGAATGGAGCGATGCAGAAT
TACCCGGCGCTGTAGCGCATTTCCTCGTGCTTTTCAAAGAAATATTACGG
AGCCTCTCCCTCTTCCTCTTGACCCTCAGTGCGACTTGCTTCTGCGCCGC
GTGTTATCAAAGTACTCGGGCAGACTCATCCTCTAAATTATTGGAGAATT
TGACAGATCCTCAGCGTCGTCTGTTGGGTTTGGAGAACGTACAGCCCAAG
ATTGATCAGAAAACCCCACGGGTGGAGGTCGCGGAGATGCCGACGCCTTT
GGAAAAAGGTTCTTTCACACCCCTTGTCTCCCCTTCGCATCCCCCTTCCT
CTGCTGGAAAAGGTCGTTTACCGCTAGTTGACACGACAGGCGGGCCAAGC
GTGGAATCGTCGTCCTCCCAGTACCTGACTCCGCCGCCATCGATGTACAG
GGCACGTGCCACCCCTACCAAAGTCGCGCTCTTCCCTTCGGGCGGGAGTG
GAGGGGACAAGGGCCGCCCGCCACGACGGAAGAGTGGAGGCGATGGGGCT
GTGAGCTTTGGAGAAAGTGCGGACGTGAAAATGAAAGGTTTGCTGGACGA
GATGCTTGTGGCAGCCGACGGGACACCCGTGTCAGGGCAACAGCTGACCC
CGCAAGGGAGAGGACTGAGCGCATCCAAGGGCGCACACCAATTTCTGAGC
AACGTTCCGATATCTCCCCTTACGAACGAGGTGGTGGGGCCGTACAGAGA
GTCGGCGCTGGGGGGGGCAGGCGGGGGCCTATTGGGGGGACCGAGCGGGT
CTCCGACTGAGCGGTGGGACGTCCGGGAGTGGCCACAGATACTGCAACAC
CGGATCGGGGGGGGCTTGGACGTGTACAAACTCTCAAATTACGTGGATAA
TCTGCGAGAGACGCTGTACACGGAAATCATCGACTTGCTCACGCGCTTTA
ACGCGGCCGTGGTGGCGCTGGAGCGTTGCGGGGTCCCTCTCGACTTATTG
CTGGGAGAAGTGAACAGCACGCCGTCAGGATTGGGCTTGGAGGACTACTT
GAACCAGGCTCGGGGCCAGTGGGAGAAGGAGGTGCAAGAATACACGGGCC
TGAAGCGCGTCTTGTCCGAGGGAGAGGGTTGGATGGACCGCTTCGGACAC
ATCTATCGACGTTTGGGGGCCATGGTCCAAGACTCCTACCTGAGCAGCTA
TGAATGGTCGCGAGGGGGCGTACTGAGGCATCGGAATGTGACGGTAGAAC
TGCCGACGGACGCGGATTTGATCATGCATGTCTTCCTATGGCGTTGCGAC
GCCATGGCCGAGCACCGTTTGCACGGGGGGGACCGCCCCTTTGTCAAGCA
GCATTTTTTGGAGGTCCCACCAGGCACCGAAGAGAGCAGCCGCAGTCTGC
GGGGGCGTAATTTGATCATGCGGCACGGGACAAGTCCCCCGTACTTCTCG
GTAGTGGAAAACGGGCTCGTGCACCGGATTCCAACAGGGAAGGACAACGC
GCTGGTGGCGATCGTAGTTTTTCTCTTTTTGGCGCGGAGGGACCGTTGGC
TTCCCAAGTACAATCCGGGCTATCGTCGCTTGTTGGAAGGGGTTTTTGGG
TCCGCCGTGCATCCAGAGGGTGGAGCGCGGGGCGACAAAGGGGGCCAAAA
GGAGGATGGAAAACGGGGGGATAAGGCGTTCGGGCTACCCGATGCTAGCA
AGAGGAAAAGCGATGGCGATAGAGATGGAAGTCCGGAGGTAGAAGGTCGA
TGATGTAATGATAAAGAGTCGGATGGGAATGGTTTGGGAAGACCCATTTT
GTTTGAAGTGCATTGAGCTCCTTCTTTACTTTTATGAGGAGGCATCGAAT
ATATATGTTGCTTCAACCATTAAACCCGCCCATGTACACATCCAATGTTA
TGAATAAACGCAAAGGATGAAGAACAGACAACGTTGGAAGGC
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Coding sequence (CDS) from alignment at CM002455.1:300042..302333-

>rna113 ID=rna113|Name=rna113|organism=Nannochloropsis gaditana|type=CDS|length=2013bp|location=Sequence derived from alignment at CM002455.1:300042..302333- (Nannochloropsis gaditana)
ATGTCCCGTACTCCTTACCTCTCGGCGACGGCAGACGGCACTAATAATAC
AACCAACGCTGTCGCAAACACCGCCAAATTGTCGGAGGAGAAGTCAACGC
GTAGTATTGAGCAGTCTTCCATTGGTACTGCCCATCGGAGGGGAACTTTG
GACATCTTACAGCATGACAAATACGCCTTAGCCGCGTTCCTTTTCCGCAC
CTCTTTGGTCCTCGCTATTGCCTGGTATCTCAACCCCGAGCGCATACCGT
ACTGCCAATGTTTGGCGCGCATTCTCCTCTTGCAAATATGGGAATGGAGC
GATGCAGAATTACCCGGCGCTGTAGCGCATTTCCTCGTGCTTTTCAAAGA
AATATTACGGAGCCTCTCCCTCTTCCTCTTGACCCTCAGTGCGACTTGCT
TCTGCGCCGCGTGTTATCAAAGTACTCGGGCAGACTCATCCTCTAAATTA
TTGGAGAATTTGACAGATCCTCAGCGTCGTCTGTTGGGTTTGGAGAACGT
ACAGCCCAAGATTGATCAGAAAACCCCACGGGTGGAGGTCGCGGAGATGC
CGACGCCTTTGGAAAAAGGTTCTTTCACACCCCTTGTCTCCCCTTCGCAT
CCCCCTTCCTCTGCTGGAAAAGGTCGTTTACCGCTAGTTGACACGACAGG
CGGGCCAAGCGTGGAATCGTCGTCCTCCCAGTACCTGACTCCGCCGCCAT
CGATGTACAGGGCACGTGCCACCCCTACCAAAGTCGCGCTCTTCCCTTCG
GGCGGGAGTGGAGGGGACAAGGGCCGCCCGCCACGACGGAAGAGTGGAGG
CGATGGGGCTGTGAGCTTTGGAGAAAGTGCGGACGTGAAAATGAAAGGTT
TGCTGGACGAGATGCTTGTGGCAGCCGACGGGACACCCGTGTCAGGGCAA
CAGCTGACCCCGCAAGGGAGAGGACTGAGCGCATCCAAGGGCGCACACCA
ATTTCTGAGCAACGTTCCGATATCTCCCCTTACGAACGAGGTGGTGGGGC
CGTACAGAGAGTCGGCGCTGGGGGGGGCAGGCGGGGGCCTATTGGGGGGA
CCGAGCGGGTCTCCGACTGAGCGGTGGGACGTCCGGGAGTGGCCACAGAT
ACTGCAACACCGGATCGGGGGGGGCTTGGACGTGTACAAACTCTCAAATT
ACGTGGATAATCTGCGAGAGACGCTGTACACGGAAATCATCGACTTGCTC
ACGCGCTTTAACGCGGCCGTGGTGGCGCTGGAGCGTTGCGGGGTCCCTCT
CGACTTATTGCTGGGAGAAGTGAACAGCACGCCGTCAGGATTGGGCTTGG
AGGACTACTTGAACCAGGCTCGGGGCCAGTGGGAGAAGGAGGTGCAAGAA
TACACGGGCCTGAAGCGCGTCTTGTCCGAGGGAGAGGGTTGGATGGACCG
CTTCGGACACATCTATCGACGTTTGGGGGCCATGGTCCAAGACTCCTACC
TGAGCAGCTATGAATGGTCGCGAGGGGGCGTACTGAGGCATCGGAATGTG
ACGGTAGAACTGCCGACGGACGCGGATTTGATCATGCATGTCTTCCTATG
GCGTTGCGACGCCATGGCCGAGCACCGTTTGCACGGGGGGGACCGCCCCT
TTGTCAAGCAGCATTTTTTGGAGGTCCCACCAGGCACCGAAGAGAGCAGC
CGCAGTCTGCGGGGGCGTAATTTGATCATGCGGCACGGGACAAGTCCCCC
GTACTTCTCGGTAGTGGAAAACGGGCTCGTGCACCGGATTCCAACAGGGA
AGGACAACGCGCTGGTGGCGATCGTAGTTTTTCTCTTTTTGGCGCGGAGG
GACCGTTGGCTTCCCAAGTACAATCCGGGCTATCGTCGCTTGTTGGAAGG
GGTTTTTGGGTCCGCCGTGCATCCAGAGGGTGGAGCGCGGGGCGACAAAG
GGGGCCAAAAGGAGGATGGAAAACGGGGGGATAAGGCGTTCGGGCTACCC
GATGCTAGCAAGAGGAAAAGCGATGGCGATAGAGATGGAAGTCCGGAGGT
AGAAGGTCGATGA
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Synonyms
Publications