rna1129, rna1129 (mRNA) Nannochloropsis gaditana

Overview
Namerna1129
Unique Namerna1129
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1244
Alignment locationCM002456.1:1261121..1262927 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g38.8679.mrna
Orig protein idgnl|cribi|Naga_100006g38.8679
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1261121..1262927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g38gene1088Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1129rna1129-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29590.1cds1128Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1129 ID=rna1129|Name=rna1129|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp
CGGGAGGAGGACATAGAACAAAAGGCGGTGGAAGGAGAGGGAGATGGAGG
CGGGAAAGGGGAAGAAGAGGTGGAGGTGGTGTTCTTGGGCACGGGGTCAG
CCATCCCGTCCAAGTACCGCAACGTCTCGGGTGTCTATCTGCGGATAGGG
GGGGGCGCACAAAGGGAGGGGCCTTGGCCGGAAGGAGGGCGTGGTCACCC
GTCTGAGGAGCGGGACGAGGAGGCGGGGCGAGGCCGGGTCAAGGGCATGC
TCTTGGACGTCGGGGAAGGGTCATTGGGGCAATTGGCTTCCCTTTACGAG
GGTCCCACGCTCTGGGAAGTGCTCATTTCCTTGAGCGCGATATGGATCTC
TCATCCCCATGCTGACCATCACCTCGGCTTGATGAAGGTCTTGGCCGCCC
GTCGACAGGCGGCGGCAGACCTAGGCCTGCTGGGGGGCAAGCCGCCTCCG
ATGTTGATCATGGCGCCACGCCCCGTCCTGGCCTGGCTACGGGAACATCG
ATCTTGGGATGCAACAGTGGAGTGGGGAGAGGCAGTGGAGGGAGATCGGG
GGGGAGGGGAAGGCCTGATGAAAGAAAATTACCTGGTGGACATGGAGCGC
ATGTCTCCCTTCGCGTACCAGTACCTAGAGCGAGAGCTGGACCTCCTGAA
TCTGACCAACGTCGGCGTGCACCACTGCCCTTTTGCCTTCGGAGTGGTTC
TAGACGGACGGGCGGGTTGGCGCCTCGTCTATTCCGGCGACACGCGGCCC
TGCCGACGGCTGGAGCAAGCAGGACGAGGGGCGACCGTCCTCATCCATGA
GGCGACGTTTGGGAACGAGAAAGCGGCGGAGGCTGTGGAACGGAAGCACA
GCACGGTGGGAGAGGCCTTGGACGTGGCCAGACGGATGGAAGCGAAGACG
GTGATCCTCACGCATTTCAGCCAACGGTATCCTAAGTTTCCTGTCTTGCC
GCCGGACTACGAGTTGCAAGTGTGTGTGGCCTTTGACTTAATGACATTGC
GCTTTAAAGACGTCGGCCGAGCGGCGGCGTTGTTACCTGCGCTGCAGAAG
CTTTTCCCTGTGGAGGAAGAAGCCAGTGATGAGCAAATTCTCATGTCTCA
GATTGAAGGGAAGTAATCGGAGGCATTGTGCGACTTAACGTCCAGAAAAG
TTTGCAAAGTTTACATGTAAACTGTGTGTTTGTACAATAAACAGGCTTAC
TAAAAGAAATTAGAAGAATTGCTCGGAATGGACTACGTCAACGA
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protein sequence of rna1129

>rna1129-protein ID=rna1129-protein|Name=rna1129|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MIHARGVTIVALSILGMAAGQNLRFPEAADGLRLPESSEGTLPVSNNAAS
HPLIGAPASESSPVRSSAPSVSVSPSHFPSPVVRDMGLYTSDEIEGTVRF
IMPKFRGLPVDYCLRYQHGSVRRERRGIDCGVPAASQYCRDQGMDDSIDY
VVTYYSSQATSTLGDGAVHAADPTGDGKGRHTWFTSITCRFSVGEDVAVA
EAGGWPVEEISTRWEAVDVKSTAGGRSMEGHSD
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mRNA from alignment at CM002456.1:1261121..1262927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1129 ID=rna1129|Name=rna1129|organism=Nannochloropsis gaditana|type=mRNA|length=1807bp|location=Sequence derived from alignment at CM002456.1:1261121..1262927+ (Nannochloropsis gaditana)
CCGGATCGGCGAGACCCAGGTCCAAACCCGCCACGGGCCTGTTTTATTCT
GCCTGGCAAAAACCTTGTCGGCGCGCGCGGGTGGAAGCATTTTGTGCCGG
TGCCTGTGTGTCTGTTCTCTGAAATTCATCCCGCGCAGGTCACGTGGAGC
TCTCATGTCGCCTTGTTACTCCTTATATCCGCCTTACTCACATGGCTTTC
CCCATCAACAGCTGGTGGTAGGACAGCAAGGCTTGTTAGTTGAAACACCG
GGCCAGTGCTACCCTCGTTCGTACGATGATTCACGCACGTGGTGTAACTA
TCGTTGCCTTATCCATCCTAGGCATGGCAGCAGGACAGGTAAAGTGCGAA
TGTcacgagagggagaagatctGAAAGAACTTCAGGGGCCCTTTCAGAAC
AGCTGGAATCGCCCCCGCTCAATCTTACAAATTAGCGTCATAAAATTGCA
ACTATAAATGTGTGCTGCTTAAATCTTTCATTTATTTGTACACTGAGCAT
ATTTAGAGCAAGAAATTAGCGATCGTTTTCAGATGCACATGTACAGGAGT
TATGCCCGGAGGTGGTAGGGATGCATCTCACTCAGACACTCTGTAGTGTT
AAACAGGACCATCACATCTCCCAGTCCCATGACCCAAAAATGAATACATC
CTCAAACGATGTAGTCACTAGCGTATTCGTATCATCTCTCCTAATCACAG
AACTTGCGGTTCCCGGAGGCTGCCGATGGCCTCCGTCTGCCAGAATCATC
TGAAGGCACACTGCCCGTGTCAAATAATGCGGCGTCCCACCCTCTGATTG
GAGCCCCAGCGTCTGAGAGTAGCCCCGTCAGGTCAtccgccccctccgtg
tctgtctctccttcccactttCCGTCCCCCGTGGTCAGGGACATGGGACT
TTACACGTCGGACGAAATAGAAGGCACGGTGCGCTTTATCATGCCAAAGT
TTAGGGGGCTGCCAGTGGACTACTGTCTGAGGTACCAGCATGGAAGTGTG
CGCCGTGAACGGCGTGGGATTGATTGCGGCGTCCCCGCGGCCTCTCAATA
TTGCCGCGACCAGGGCATGGACGACTCCATCGACTACGTGGTGACATACT
ACTCGAGTCAGGCCACCAGCACGCTCGGCGATGGCGCCGTCCATGCCGCT
GATCCCACaggtgatggaaaaggccgACATACGTGGTTCACTAGCATCAC
CTGCAGGTTCTCCGTCGGGGAAGACGTGGCagtggcggaggccgggggcT
GGCCGGTAGAAGAGATCTCCACCCGGTGGGAGGCTGTGGACGTGAAATCG
ACGGCGGGCGGCCGCTCGATGGAAGGACATAGTGACTGACCAGAGTGAGA
TCGCTGACCTGATGGGGATTTTGAGGATTCTAAAGATGGGAGCATAATTT
CCAGGCGTGGATGGGGTGTGAAAGCGTGAAGGCCCGTGGACAGCGAGAAT
TTGGTTGGTTTCTGACAGTCTGATCGAACAAACAACTATTGGGCTGTCGT
GTCTGTGCACCAAGAAGGGTTATACATACGGGAACAGAGAAGACGCGGGT
CGTGATGTAGAGCCTCGCGTTGCAAGGAATGGAAGATGCAGAGAGAATCG
GGGAGAAAACTGACGAGAAGGGCACTCTGTACATAGTGGAAAAATGTCAC
GCGGCAGTGAGCTTTCTTCTGCAAAAGTTagagcaggaaaaaggaggata
CAAATTTTGAAATGAAgcatttaaaaaaaggagggaggatagaggCTGAT
ATACGGCTACCGTTGGCAAAAATCATGAACAAATTTCGTAAGGGTTGCCG
TCAAAGC
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Coding sequence (CDS) from alignment at CM002456.1:1261121..1262927+

>rna1129 ID=rna1129|Name=rna1129|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002456.1:1261121..1262927+ (Nannochloropsis gaditana)
ATGATTCACGCACGTGGTGTAACTATCGTTGCCTTATCCATCCTAGGCAT
GGCAGCAGGACAGAACTTGCGGTTCCCGGAGGCTGCCGATGGCCTCCGTC
TGCCAGAATCATCTGAAGGCACACTGCCCGTGTCAAATAATGCGGCGTCC
CACCCTCTGATTGGAGCCCCAGCGTCTGAGAGTAGCCCCGTCAGGTCAtc
cgccccctccgtgtctgtctctccttcccactttCCGTCCCCCGTGGTCA
GGGACATGGGACTTTACACGTCGGACGAAATAGAAGGCACGGTGCGCTTT
ATCATGCCAAAGTTTAGGGGGCTGCCAGTGGACTACTGTCTGAGGTACCA
GCATGGAAGTGTGCGCCGTGAACGGCGTGGGATTGATTGCGGCGTCCCCG
CGGCCTCTCAATATTGCCGCGACCAGGGCATGGACGACTCCATCGACTAC
GTGGTGACATACTACTCGAGTCAGGCCACCAGCACGCTCGGCGATGGCGC
CGTCCATGCCGCTGATCCCACaggtgatggaaaaggccgACATACGTGGT
TCACTAGCATCACCTGCAGGTTCTCCGTCGGGGAAGACGTGGCagtggcg
gaggccgggggcTGGCCGGTAGAAGAGATCTCCACCCGGTGGGAGGCTGT
GGACGTGAAATCGACGGCGGGCGGCCGCTCGATGGAAGGACATAGTGACT
GAATGATTCACGCACGTGGTGTAACTATCGTTGCCTTATCCATCCTAGGC
ATGGCAGCAGGACAGAACTTGCGGTTCCCGGAGGCTGCCGATGGCCTCCG
TCTGCCAGAATCATCTGAAGGCACACTGCCCGTGTCAAATAATGCGGCGT
CCCACCCTCTGATTGGAGCCCCAGCGTCTGAGAGTAGCCCCGTCAGGTCA
tccgccccctccgtgtctgtctctccttcccactttCCGTCCCCCGTGGT
CAGGGACATGGGACTTTACACGTCGGACGAAATAGAAGGCACGGTGCGCT
TTATCATGCCAAAGTTTAGGGGGCTGCCAGTGGACTACTGTCTGAGGTAC
CAGCATGGAAGTGTGCGCCGTGAACGGCGTGGGATTGATTGCGGCGTCCC
CGCGGCCTCTCAATATTGCCGCGACCAGGGCATGGACGACTCCATCGACT
ACGTGGTGACATACTACTCGAGTCAGGCCACCAGCACGCTCGGCGATGGC
GCCGTCCATGCCGCTGATCCCACaggtgatggaaaaggccgACATACGTG
GTTCACTAGCATCACCTGCAGGTTCTCCGTCGGGGAAGACGTGGCagtgg
cggaggccgggggcTGGCCGGTAGAAGAGATCTCCACCCGGTGGGAGGCT
GTGGACGTGAAATCGACGGCGGGCGGCCGCTCGATGGAAGGACATAGTGA
CTGA
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Synonyms
Publications