rna1128, rna1128 (mRNA) Nannochloropsis gaditana

Overview
Namerna1128
Unique Namerna1128
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length783
Alignment locationCM002456.1:1259185..1260428 +

Link to JBrowse

Properties
Property NameValue
ProductRNase Z-like protein
Orig transcript idgnl|cribi|Naga_100006g39.8620.mrna
Orig protein idgnl|cribi|Naga_100006g39.8620
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1259185..1260428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g39gene1087Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1128rna1128-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29531.1cds1127Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1128 ID=rna1128|Name=rna1128|organism=Nannochloropsis gaditana|type=mRNA|length=783bp
ATGGGAATGTTTGCCCCTCCTTCGAGGACCCGGGCAACACTTCAGCCCAC
ATTGGCTCGTCTGCACAAGCAGATCTCTCATGCACCTTCTCCGAGTCCCT
TACTACCTTCTCAAGCCAATCAAAACCATCCCAAAACGCAGCATCGGGAA
GTGTGGAAAGGTCTAATCGGAGAGGCACCCACAGAGGAGTGCTTGAAAAA
AGAGTTGGAGGAATCGACTGTCTTCATTTACTGTGGGCATGGATCCGGTG
AGCTTTTTCTGGCCCGGGAAGACGTGGCGACGCTCAAACAAGCGCCCCTG
GCGATTTTGATGGGTTGTTCCAGCGGTCGTCTTCGCGCGCCAGGCGCGAG
CAGCATCAAACGAGGCAAAGGCAACGAGGTCCCGCTTCCCTCCAACCGTA
GAAGCTCTAGAGATGTCGGCTGGATCGGCCGTAAAATTCCATTCACGTCT
CCAGAGCTATTCGAACCCACGGGAATGGCGCTTTCCTATTTGGGAGCCGG
AAGCCCGGCTGTGGTTGGTAATTTATGGGACGTGACGGACCGGGACATCG
ACCGTTTTTGTGTGGCCTTACTTGAGGAGCTATTTCCAAAAGCCAAAGCA
TCGACAGCAACGGACGAGATTCTGGGAGATGAAGGGTTGGTGTTGAAAGG
CGAGAGAGCGGTGGAAGACAGCAAGGCACTTATCCTTCCGGCAGTAGCCC
GGGCCCGGGGTGCGTGTAAGCTAAGACATCTCGTAGGAGCAGCTCCCGTC
GCGTATGGCTTGCCAAGTGAGCTTGTAGATTAG
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protein sequence of rna1128

>rna1128-protein ID=rna1128-protein|Name=rna1128|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLA
ARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGD
RGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGV
VLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERK
HSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMT
LRFKDVGRAAALLPALQKLFPVEEEASDEQILMSQIEGK
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mRNA from alignment at CM002456.1:1259185..1260428+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1128 ID=rna1128|Name=rna1128|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp|location=Sequence derived from alignment at CM002456.1:1259185..1260428+ (Nannochloropsis gaditana)
cgggaggaggacatagAACaaaaggcggtggaaggagagggagatggagg
cgggaaaggggaagaagaggtggaggtggtgttCTTGGGCACGGGGTCAG
CCATCCCGTCCAAGTACCGCAACGTCTCGGGTGTCTATCTGCGGATAGGG
GGGGGCGCacaaagggaggggccttggccggaaggagggcgtggtcacCC
GTCTGAGgagcgggacgaggaggcggggcgagGCCGGGTCAAGGGCATGC
TCTTGGACGTCGGGGAAGGGTCATTGGGGCAATTGGCTTCCCTTTACGAG
GGTCCCACGCTCTGGGAAGTGCTCATTTCCTTGAGCGCGATATGGATCTC
TCATCCCCATGCTGACCATCACCTCGGCTTGATGAAGGTCTTGGCCGCCC
GTCGACAGGCGGCGGCAGACCTAGGCCTGCTGGGGGGCAAGCCGCCTCCG
ATGTTGATCATGGCGCCACGCCCCGTCCTGGCCTGGCTACGGGAACATCG
ATCTTGGGATGCAACAGTGGAGTGGGgagaggcagtggagggagatcggg
ggggaggggaaggcctgATGAAAGAAAATTACCTGGTGGACATGGAGCGC
ATGTCTCCCTTCGCGTACCAGTACCTAGAGCGAGAGCTGGACCTCCTGAA
TCTGACCAACGTCGGCGTGCACCACTGCCCTTTTGCCTTCGGAGTGGTTC
TAGACGGACGGGCGGGTTGGCGCCTCGTCTATTCCGGCGACACGCGGCCC
TGCCGACGGCTGGAGCAAGCAGGACGAGGGGCGACCGTCCTCATCCATGA
GGCGACGTTTGGGAACgagaaagcggcggaggctgtGGAACGGAAGCACA
GCACGGTGGGAGAGGCCTTGGACGTGGCCAGACGGATGGAAGCGAAGACG
GTGATCCTCACGCATTTCAGCCAACGGTATCCTAAGTTTCCTGTCTTGCC
GCCGGACTACGAGTTGCAAGTGTGTGTGGCCTTTGACTTAATGACATTGC
GCTTTAAAGACGTCGGCCGAGCGGCGGCGTTGTTACCTGCGCTGCAGAAG
CTTTTCcctgtggaggaagaagccagTGATGAGCAAATTCTCATGTCTCA
GATTGAAGGGAAGTAATCGGAGGCATTGTGCGACTTAACGTCCAGAAAAG
TTTGCAAAGTTTACATGTAAACTGTGTGTTTGTACAATAAACAGGCTTAC
TAAAAGAAATTAGAAGAATTGCTCGGAATGGACTACGTCAACGA
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Coding sequence (CDS) from alignment at CM002456.1:1259185..1260428+

>rna1128 ID=rna1128|Name=rna1128|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002456.1:1259185..1260428+ (Nannochloropsis gaditana)
ATGCTCTTGGACGTCGGGGAAGGGTCATTGGGGCAATTGGCTTCCCTTTA
CGAGGGTCCCACGCTCTGGGAAGTGCTCATTTCCTTGAGCGCGATATGGA
TCTCTCATCCCCATGCTGACCATCACCTCGGCTTGATGAAGGTCTTGGCC
GCCCGTCGACAGGCGGCGGCAGACCTAGGCCTGCTGGGGGGCAAGCCGCC
TCCGATGTTGATCATGGCGCCACGCCCCGTCCTGGCCTGGCTACGGGAAC
ATCGATCTTGGGATGCAACAGTGGAGTGGGgagaggcagtggagggagat
cgggggggaggggaaggcctgATGAAAGAAAATTACCTGGTGGACATGGA
GCGCATGTCTCCCTTCGCGTACCAGTACCTAGAGCGAGAGCTGGACCTCC
TGAATCTGACCAACGTCGGCGTGCACCACTGCCCTTTTGCCTTCGGAGTG
GTTCTAGACGGACGGGCGGGTTGGCGCCTCGTCTATTCCGGCGACACGCG
GCCCTGCCGACGGCTGGAGCAAGCAGGACGAGGGGCGACCGTCCTCATCC
ATGAGGCGACGTTTGGGAACgagaaagcggcggaggctgtGGAACGGAAG
CACAGCACGGTGGGAGAGGCCTTGGACGTGGCCAGACGGATGGAAGCGAA
GACGGTGATCCTCACGCATTTCAGCCAACGGTATCCTAAGTTTCCTGTCT
TGCCGCCGGACTACGAGTTGCAAGTGTGTGTGGCCTTTGACTTAATGACA
TTGCGCTTTAAAGACGTCGGCCGAGCGGCGGCGTTGTTACCTGCGCTGCA
GAAGCTTTTCcctgtggaggaagaagccagTGATGAGCAAATTCTCATGT
CTCAGATTGAAGGGAAGTAA
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Synonyms
Publications