EWM29531.1, cds1127 (CDS) Nannochloropsis gaditana

Overview
NameEWM29531.1
Unique Namecds1127
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1259431..1260300 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29531.1
ProductRNase Z-like protein
Orig transcript idgnl|cribi|Naga_100006g39.8620.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1259431..1260300 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR001279Beta-lactamas-like
Homology
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|585112102|gb|EWM29531.1| (RNase Z-like protein [Nannochloropsis gaditana])

HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEEASDEQILMSQIEGK 289
            MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEEASDEQILMSQIEGK
Sbjct:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEEASDEQILMSQIEGK 289          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|1210520084|dbj|GAX20967.1| (ribonuclease Z [Fistulifera solaris])

HSP 1 Score: 204.142 bits (518), Expect = 1.246e-56
Identity = 116/283 (40.99%), Postives = 167/283 (59.01%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYE--------LQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEE 275
            +LLDVGEG++GQL       +  E+  S+ A+W+SHPHADHHLG++++L  +++  +  G       P++++ P P+  +L E+   D ++E               +K +    +   S      LEREL + ++  V V HC  ++ VVLDG +  R+VYSGD RP R+L  A  GA VLIHEATF +   AEAV ++HSTVGEAL+VAR M+AK V+LTHFSQRYP+ P     YE        L+V  AFD M L   ++G AA + PA++ L+P + E
Sbjct:  482 ILLDVGEGTVGQLLRTQHISSSIELFQSVKAVWLSHPHADHHLGVLRLLHEKKKQLSTDG-------PVILIGPTPLFDFLNEYSKQDPSIE------------NSFVKVDCRDLVHGQSSMLANVLERELGISSVRTVPVAHCAHSYAVVLDGTSFGRVVYSGDCRPSRQLAAAALGADVLIHEATFEDGMEAEAVLKRHSTVGEALNVARDMQAKCVVLTHFSQRYPRIPPT-SSYEKDSIDSPSLKVVFAFDHMRLTPGNLGLAARITPAVRLLYPEDTE 744          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|219122100|ref|XP_002181391.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407377|gb|EEC47314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 201.445 bits (511), Expect = 8.744e-56
Identity = 113/278 (40.65%), Postives = 163/278 (58.63%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGE-AVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYE--LQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEE 275
            +LLDVGEG++GQL     GPT    L  + A+WISHPHADHHLG++++L  R+            P P+L+M P P++++L E+ S D+ +     AV  +              D+ R +  A   L+  L + +   V V HCP++FG++L+G    +LVYSGD RP  +L +   GA +LIHEATF +    EA  ++HST+GEAL V   M+AK V+LTHFSQRYPK P  P ++E  + V  AFD M L   ++  A+ + PA++ L+P E E
Sbjct:  472 ILLDVGEGTVGQLLRANSGPT-SSTLAHIKAVWISHPHADHHLGILRLLHDRK-----------APDPLLLMCPSPIISFLTEYCSMDSDLSSAYVAVNCN--------------DLIRENAKASFLLKEALGIDSSFAVPVTHCPYSFGLILEGTCFGKLVYSGDCRPSSQLAKCALGADLLIHEATFEDGMEVEAALKRHSTIGEALSVGMEMKAKCVVLTHFSQRYPKVPPTPVNHEGSIPVIFAFDFMRLSPSNLVMASKVTPAIRLLYPEESE 723          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|12835202|dbj|BAB23185.1| (unnamed protein product, partial [Mus musculus])

HSP 1 Score: 194.512 bits (493), Expect = 1.819e-55
Identity = 110/271 (40.59%), Postives = 154/271 (56.83%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKP-PPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLF 270
            +LLD GEG+ GQL   Y G  +  VL SL+A+++SH HADHH GL+ +L  R  A A LG    KP  P+L++AP  + AWL+++ +    +    ++   +   +G    N    +ER+       L    DL       V HC  AFG  L   +GW++VYSGDT PC  L Q G+ AT+LIHEAT  +    EAVE+ HST  +A++V  RM A+ ++L HFSQRY K P+  PD+  +V +AFD M + F D      L+P L+ LF
Sbjct:  112 VLLDCGEGTFGQLCRHY-GQQIDRVLCSLTAVFVSHLHADHHTGLLNILLQREHALASLG----KPFQPLLVVAPTQLRAWLQQYHNHCQEILHHVSMIPAKCLQKGAEVSN--TTLERL----ISLLLETCDLEEFQTCLVRHCKHAFGCALVHSSGWKVVYSGDTMPCEALVQMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAINVGMRMNAEFIMLNHFSQRYAKIPLFSPDFNEKVGIAFDHMKVCFGDFPTVPKLIPPLKALF 371          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|148678452|gb|EDL10399.1| (elaC homolog 2 (E. coli), isoform CRA_b [Mus musculus])

HSP 1 Score: 194.126 bits (492), Expect = 3.789e-55
Identity = 110/271 (40.59%), Postives = 154/271 (56.83%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKP-PPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLF 270
            +LLD GEG+ GQL   Y G  +  VL SL+A+++SH HADHH GL+ +L  R  A A LG    KP  P+L++AP  + AWL+++ +    +    ++   +   +G    N    +ER+       L    DL       V HC  AFG  L   +GW++VYSGDT PC  L Q G+ AT+LIHEAT  +    EAVE+ HST  +A++V  RM A+ ++L HFSQRY K P+  PD+  +V +AFD M + F D      L+P L+ LF
Sbjct:  140 VLLDCGEGTFGQLCRHY-GQQIDRVLCSLTAVFVSHLHADHHTGLLNILLQREHALASLG----KPFQPLLVVAPTQLRAWLQQYHNHCQEILHHVSMIPAKCLQKGAEVSN--TTLERL----ISLLLETCDLEEFQTCLVRHCKHAFGCALVHSSGWKVVYSGDTMPCEALVQMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAINVGMRMNAEFIMLNHFSQRYAKIPLFSPDFNEKVGIAFDHMKVCFGDFPTVPKLIPPLKALF 399          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|821482745|ref|XP_012404293.1| (PREDICTED: zinc phosphodiesterase ELAC protein 2-like, partial [Sarcophilus harrisii])

HSP 1 Score: 190.274 bits (482), Expect = 4.022e-55
Identity = 108/275 (39.27%), Postives = 156/275 (56.73%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEE 275
            +LLD GEG+ GQL   Y G  +  +L++++A+++SH HADHH GL+ +L  R +A A +G       P+L++AP  V+ WL+++   D   E   AV          +++   V    ++      LE+  DL       V HC  AFG  L  ++GW++VYSGDT PC  L Q G+GAT+LIHEAT  +    EAVE+ HST  +A+ V  +M AK ++L HFSQRY K P+  PD+  +V +AFD M + F D      L+  L+ LF  E E
Sbjct:   10 LLLDCGEGTFGQLCRHY-GDEVDRILVNIAAVFVSHIHADHHTGLLNILLQRNRALASVG---KSSIPLLLVAPTQVMTWLQQYH--DHCQEILGAVSMIPAK---CLQKGTEVSKPMIARLITSLLEK-YDLEEFQTCLVKHCKNAFGCALVHKSGWKIVYSGDTMPCDALVQLGKGATMLIHEATLEDGLEEEAVEKTHSTTSQAIGVGVKMNAKFIMLNHFSQRYAKIPLFSPDFNEKVGIAFDHMRVGFGDFSTVPRLISPLKALFADEIE 274          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|568975508|ref|XP_006534131.1| (PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X5 [Mus musculus])

HSP 1 Score: 193.741 bits (491), Expect = 5.710e-55
Identity = 110/271 (40.59%), Postives = 154/271 (56.83%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKP-PPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLF 270
            +LLD GEG+ GQL   Y G  +  VL SL+A+++SH HADHH GL+ +L  R  A A LG    KP  P+L++AP  + AWL+++ +    +    ++   +   +G    N    +ER+       L    DL       V HC  AFG  L   +GW++VYSGDT PC  L Q G+ AT+LIHEAT  +    EAVE+ HST  +A++V  RM A+ ++L HFSQRY K P+  PD+  +V +AFD M + F D      L+P L+ LF
Sbjct:  140 VLLDCGEGTFGQLCRHY-GQQIDRVLCSLTAVFVSHLHADHHTGLLNILLQREHALASLG----KPFQPLLVVAPTQLRAWLQQYHNHCQEILHHVSMIPAKCLQKGAEVSN--TTLERL----ISLLLETCDLEEFQTCLVRHCKHAFGCALVHSSGWKVVYSGDTMPCEALVQMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAINVGMRMNAEFIMLNHFSQRYAKIPLFSPDFNEKVGIAFDHMKVCFGDFPTVPKLIPPLKALF 399          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|1026949473|ref|XP_016612849.1| (hypothetical protein SPPG_00513 [Spizellomyces punctatus DAOM BR117] >gi|907099574|gb|KND04810.1| hypothetical protein SPPG_00513 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 198.749 bits (504), Expect = 2.285e-54
Identity = 113/289 (39.10%), Postives = 170/289 (58.82%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWG---------EAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDY-----ELQVCVAFDLMTLRFKDVGRAAALLPALQKLFPVEEE 275
            +LLD GEG+LGQL   +    + E L +L  I++SH HADHHLG++++L    +           P P++I+AP     WL E+   +   E+G         E V  +  G +G  +     D+E+ +      L++ L L ++  VGVHHCP+A+ +VLD  A  ++V+SGD RP   L  AGRGA+V+IHEAT  ++K  EA+E++H T GEA+ VA+ MEA+ ++LTHFSQRYPK P+LP D      +++V +A+DLM  +     R   L+P L+ LFP ++ 
Sbjct:  570 VLLDAGEGTLGQLFRHFGPDMMKEALRNLRMIFVSHLHADHHLGVVRILKYWDEVRD-----SRNPQPLIIVAPARYQIWLEEYADCE---EFGLKHVLFLNAEDVRWNASGTDGRDE-----DVEKTT--TINTLKKTLHLKDIHTVGVHHCPWAYALVLDTEAAGKVVFSGDCRPSEDLVNAGRGASVVIHEATLEDDKVEEALEKRHCTTGEAIQVAKSMEAQNLLLTHFSQRYPKIPILPNDVDDDLTQVKVGIAYDLMRAKLSSFWRLPLLVPGLRALFPQDDN 843          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|723576019|ref|XP_010308065.1| (PREDICTED: zinc phosphodiesterase ELAC protein 2-like, partial [Balearica regulorum gibbericeps])

HSP 1 Score: 190.274 bits (482), Expect = 2.350e-54
Identity = 103/273 (37.73%), Postives = 153/273 (56.04%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKPPPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLEREL---DLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLF 270
            +LLD GEG+ GQL   Y G  + +VL ++ A+++SH H DHH GL+ +L  RR+A A LG       P+ ++AP  ++ WL E+ +        E + GD    + +  ++ +   E + P A  ++   L   DL       V HC  AF   +  ++GW++VYSGDT PC  L Q G+ AT+LIHEAT  +    EAVE+ HST  +A+    +M A+ ++L HFSQRY K P+   D+  +V +AFD M +RF D      L+P L+ LF
Sbjct:   74 LLLDCGEGTFGQLCRHY-GEQVDQVLCNIVAVFVSHMHTDHHSGLLNILMERRRAFAALGQAFS---PLFLVAPEQIMPWLHEYHNH------CEEILGDI---KMITSQSLVTGCENIKPKAKWFVSSLLENYDLAEFQTCEVQHCKNAFACSMMHKSGWKIVYSGDTMPCMALVQMGKNATLLIHEATLEDGMEKEAVEKTHSTTSQAIQTGMKMNAEFIMLNHFSQRYAKIPLFSEDFSEKVGIAFDHMRVRFGDFLTIPKLIPPLKALF 333          
BLAST of EWM29531.1 vs. NCBI_GenBank
Match: gi|1039738062|ref|XP_017170220.1| (PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X3 [Mus musculus])

HSP 1 Score: 194.126 bits (492), Expect = 4.165e-54
Identity = 110/271 (40.59%), Postives = 154/271 (56.83%), Query Frame = 0
Query:    1 MLLDVGEGSLGQLASLYEGPTLWEVLISLSAIWISHPHADHHLGLMKVLAARRQAAADLGLLGGKP-PPMLIMAPRPVLAWLREHRSWDATVEWGEAVEGDRGGGEGLMKENYLVDMERMSPFAYQYLERELDLLNLTNVGVHHCPFAFGVVLDGRAGWRLVYSGDTRPCRRLEQAGRGATVLIHEATFGNEKAAEAVERKHSTVGEALDVARRMEAKTVILTHFSQRYPKFPVLPPDYELQVCVAFDLMTLRFKDVGRAAALLPALQKLF 270
            +LLD GEG+ GQL   Y G  +  VL SL+A+++SH HADHH GL+ +L  R  A A LG    KP  P+L++AP  + AWL+++ +    +    ++   +   +G    N    +ER+       L    DL       V HC  AFG  L   +GW++VYSGDT PC  L Q G+ AT+LIHEAT  +    EAVE+ HST  +A++V  RM A+ ++L HFSQRY K P+  PD+  +V +AFD M + F D      L+P L+ LF
Sbjct:  258 VLLDCGEGTFGQLCRHY-GQQIDRVLCSLTAVFVSHLHADHHTGLLNILLQREHALASLG----KPFQPLLVVAPTQLRAWLQQYHNHCQEILHHVSMIPAKCLQKGAEVSN--TTLERL----ISLLLETCDLEEFQTCLVRHCKHAFGCALVHSSGWKVVYSGDTMPCEALVQMGKDATLLIHEATLEDGLEEEAVEKTHSTTSQAINVGMRMNAEFIMLNHFSQRYAKIPLFSPDFNEKVGIAFDHMKVCFGDFPTVPKLIPPLKALF 517          
The following BLAST results are available for this feature:
BLAST of EWM29531.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112102|gb|EWM29531.1|0.000e+0100.00RNase Z-like protein [Nannochloropsis gaditana][more]
gi|1210520084|dbj|GAX20967.1|1.246e-5640.99ribonuclease Z [Fistulifera solaris][more]
gi|219122100|ref|XP_002181391.1|8.744e-5640.65predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|12835202|dbj|BAB23185.1|1.819e-5540.59unnamed protein product, partial [Mus musculus][more]
gi|148678452|gb|EDL10399.1|3.789e-5540.59elaC homolog 2 (E. coli), isoform CRA_b [Mus muscu... [more]
gi|821482745|ref|XP_012404293.1|4.022e-5539.27PREDICTED: zinc phosphodiesterase ELAC protein 2-l... [more]
gi|568975508|ref|XP_006534131.1|5.710e-5540.59PREDICTED: zinc phosphodiesterase ELAC protein 2 i... [more]
gi|1026949473|ref|XP_016612849.1|2.285e-5439.10hypothetical protein SPPG_00513 [Spizellomyces pun... [more]
gi|723576019|ref|XP_010308065.1|2.350e-5437.73PREDICTED: zinc phosphodiesterase ELAC protein 2-l... [more]
gi|1039738062|ref|XP_017170220.1|4.165e-5440.59PREDICTED: zinc phosphodiesterase ELAC protein 2 i... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1128rna1128Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications