rna1127, rna1127 (mRNA) Nannochloropsis gaditana

Overview
Namerna1127
Unique Namerna1127
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1861
Alignment locationCM002456.1:1256177..1257233 +

Link to JBrowse

Properties
Property NameValue
Productseparin
Orig transcript idgnl|cribi|Naga_100006g40.8648.mrna
Orig protein idgnl|cribi|Naga_100006g40.8648
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1256177..1257233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g40gene1086Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1127rna1127-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29559.1cds1126Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1127 ID=rna1127|Name=rna1127|organism=Nannochloropsis gaditana|type=mRNA|length=1861bp
GCGTCTTTTTTTACCGCACACAAGGCGCACCATAACGCAACGCAACTGCA
CGCACCTACACACAGAGAAGGTACATCATGGCTGGTAAGCGCCCTCGTCC
GCCTGTTCAAGTGGTTGTTGCGCCCTCAATACCCTCCCCTTACGAGTACA
AATTGCAGCTTCAACGGGAGCAAGGAGAGCGACAAGATGAGGCAGCCAAT
GGTTCATATAAACGCGCCCGCTCAGGTGGCGCTTTGTCTAATGGCAACAA
TGCGGCAGAACGGGCAGAGTTTAAGAAGATGTGGAAGAGCGTGATGGATC
TCGGAGCCATGCAATTGACGGGCTACGAGAAAAAAGCCTACGATGCACGT
CGGATTGTCGAGTTGGGAGGCAAAGCACCCGCGGCCATCAAGACTCCATT
CAATATTCTGATGGGCAAACGTGCAAAAGCAAAACAACGTGATGCACGCC
GTGACAATGACATTCGCGAATCGGGTGTGGTCGTGGCAAAAAAGCGGCAA
TCTGCGGCAGCACTTGCAAACCAGATTCTAGACGATGGCGGTAGACGGAA
GCATGACAGTAGCGGCAAGATCGGTGAGACGCCTTACCCTGTACTCGGGA
AGATGAAAGGTGGAACTTTATTTTTGAACAGGGGGACCATTCAGAGAGCG
ACCATGGGCAAACGGGGGGGAAGAGGTGGTGATAAGAGAGGTGGGCGTGG
GAGGGGAGAGGCAGTGGGCAGTGGGAGGGCAGCTGGCAGGGGGCGTACAG
CGGGGAAGCAGAGAAAAGGGTAGCTGGTTAAAAATGCAGCATTGGAGGAA
TGCAAGGTGCGTTTTTTACGCGTACGATATTTTTCTGCGGTATGGGTGAG
AGGGTAATTTTGCAAAGAAACCAGAGAAAGTGTCTTCCTGCCATCAGTTC
TATACGCGGCAGCCATAAGTAGCGATATCACCATCAATCAGATATTTCTT
TCCCGTGTACAGGCACACACCAATGGGCCTCAAAACTGTGCGACGTTCTC
CTCACTTCGATGCTCTACCATCCCCAGGACGCCGCAAGAAGATGGCAAAA
AAAGAGAATTCCACAGGCAACAGGGTCCTGCCCTCTCCCTCTGCTGCGAG
AGCTGCCTGCAAGCGCGCGCTCAGCACCTGCAATGTGTCTGGATTCACGT
CTGGGTGGTGCTCCTTCCACGTCCTGAAGGACGACCATGTGTCCAAATAA
CCGACCAAATGCTCCACACTCATCATGTGCGTCTCTTCCACCTTCTGCTT
GCTAAATTGGACGAAGGGAGTGTAGTCTGTCCCCGCAAACTCCATGTCCA
GCAGGGCCCGATCGCAATCCCAGACATCGTCCAGTGACGCGTACCATTCG
ATCATGGCTGCGTCGGCCTGTGGCATCTTAGGAATGTGACTCCTGGGATA
CCCAAGTACGACCAAGACTCCTTCCGGGCGGAGGAGTCTATCCACGCCTC
TCAGAAAGGATGGAATATCCAACCAGTGCATTGCTTGAGCGCATGTTACC
ACCGATGCGCTGCCATCTGGCAAAGGAACTGAAAGTGCATCCGCCTGCAA
ATATTCAACGTTGGATCCTTTTGTTGCGTTCGTCAATTGGGCAGCGCTTT
GATCAACACCCTTGGCGTGGTCGAAATACCTTGCTAGTTTCCTTAATACT
TGCCCCGAGCCAGTACAAATATCGACTAGCATGCTCCCATCCTTTGCCCT
GCTATCCATACACCCCTGTGCACGAAGAATGACCTCCACACCTGCCATCA
ACGCGTCGGGATAATTCGGACGAAATGCTGAGTAGCCCTCCGCCTGTGCA
GGGCGACCAAATGGGTCGCCTTTGGCTATCATGGGACGATTCAATGCAGG
ACTGTGCTTGC
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protein sequence of rna1127

>rna1127-protein ID=rna1127-protein|Name=rna1127|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MGMFAPPSRTRATLQPTLARLHKQISHAPSPSPLLPSQANQNHPKTQHRE
VWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPL
AILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTS
PELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKA
STATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPV
AYGLPSELVD
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mRNA from alignment at CM002456.1:1256177..1257233+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1127 ID=rna1127|Name=rna1127|organism=Nannochloropsis gaditana|type=mRNA|length=1057bp|location=Sequence derived from alignment at CM002456.1:1256177..1257233+ (Nannochloropsis gaditana)
ATGGGAATgtttgcccctccttcgaggTCATTCGGTCTCGCGCTGTCCCT
CGATTGAATACATCGaggccgccctccgcctccgcgctACGTCCGCAACA
AGGCCCTGCGACGCCACGACACAGCCGAGAAGACTGGAAGGGGCCAACAA
TACCggcaaaaggagggaaataaCGAATACGGCcactccatcttcttctc
aCCCGCGTGTGGCCTCTGTGAGGATTGGGCTCGATAGGACGTTGCAGGTT
CCACGCGCCCCCGGCTTCTACTTACTAGATCCCGAAAACAACCTCACCAG
GACCCGGGCAACACTTCAGCCCACATTGGCTCGTCTGCACAAGCAGATCT
CTCATGCACCTTCTCCGAGTCCCTTACTACCTTCTCAAGCCAATCAAAAC
CATCCCAAAACGCAGCATCGGGAAGTGTGGAAAGGTCTAATCGGAGAGGC
ACCCACAGAGGAGTGCTTGAAAAAAGAGTTGGAGGAATCGACTGTCTTCA
TTTACTGTGGGCATGGATCCGGTGAGCTTTTTCTGGCCCGGGAAGACGTG
GCGACGCTCAAACAAGCGCCCCTGGCGATTTTGATGGGTTGTTCCAGCGG
TCGTCTTCGCGCGCCAGGCGCGAGCAGCATCAAACGAGGCAAAGGCAACG
AggtcccgcttccctccaACCGTAGAAGCTCTAGAGATGTCGGCTGGATC
GGCCGTAAAATTCCATTCACGTCTCCAGAGCTATTCGAACCCACGGGAAT
GGCGCTTTCCTATTTGGGAGCCGGAAGCCCGGCTGTGGTTGGTAATTTAT
GGGACGTGACGGACCGGGACATCGACCGTTTTTGTGTGGCCTTACTTGAG
GAGCTATTTCCAAAAGCCAAAGCATCGACAGCAACGGACGAGATTCTGGG
AGATGAAGGGTTGGTGTTGAAAGGCGAGAGAGCGGTGGAAGACAGCAAGG
CACTTATCCTTCCGGCAGTAGCCCGGGCCCGGGGTGCGTGTAAGCTAAGA
CATCTCGTAGGAGCAGCTCCCGTCGCGTATGGCTTGCCAAGTGAGCTTGT
AGATTAG
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Coding sequence (CDS) from alignment at CM002456.1:1256177..1257233+

>rna1127 ID=rna1127|Name=rna1127|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002456.1:1256177..1257233+ (Nannochloropsis gaditana)
ATGGGAATgtttgcccctccttcgagGACCCGGGCAACACTTCAGCCCAC
ATTGGCTCGTCTGCACAAGCAGATCTCTCATGCACCTTCTCCGAGTCCCT
TACTACCTTCTCAAGCCAATCAAAACCATCCCAAAACGCAGCATCGGGAA
GTGTGGAAAGGTCTAATCGGAGAGGCACCCACAGAGGAGTGCTTGAAAAA
AGAGTTGGAGGAATCGACTGTCTTCATTTACTGTGGGCATGGATCCGGTG
AGCTTTTTCTGGCCCGGGAAGACGTGGCGACGCTCAAACAAGCGCCCCTG
GCGATTTTGATGGGTTGTTCCAGCGGTCGTCTTCGCGCGCCAGGCGCGAG
CAGCATCAAACGAGGCAAAGGCAACGAggtcccgcttccctccaACCGTA
GAAGCTCTAGAGATGTCGGCTGGATCGGCCGTAAAATTCCATTCACGTCT
CCAGAGCTATTCGAACCCACGGGAATGGCGCTTTCCTATTTGGGAGCCGG
AAGCCCGGCTGTGGTTGGTAATTTATGGGACGTGACGGACCGGGACATCG
ACCGTTTTTGTGTGGCCTTACTTGAGGAGCTATTTCCAAAAGCCAAAGCA
TCGACAGCAACGGACGAGATTCTGGGAGATGAAGGGTTGGTGTTGAAAGG
CGAGAGAGCGGTGGAAGACAGCAAGGCACTTATCCTTCCGGCAGTAGCCC
GGGCCCGGGGTGCGTGTAAGCTAAGACATCTCGTAGGAGCAGCTCCCGTC
GCGTATGGCTTGCCAAGTGAGCTTGTAGATTAGATGGGAATgtttgcccc
tccttcgagGACCCGGGCAACACTTCAGCCCACATTGGCTCGTCTGCACA
AGCAGATCTCTCATGCACCTTCTCCGAGTCCCTTACTACCTTCTCAAGCC
AATCAAAACCATCCCAAAACGCAGCATCGGGAAGTGTGGAAAGGTCTAAT
CGGAGAGGCACCCACAGAGGAGTGCTTGAAAAAAGAGTTGGAGGAATCGA
CTGTCTTCATTTACTGTGGGCATGGATCCGGTGAGCTTTTTCTGGCCCGG
GAAGACGTGGCGACGCTCAAACAAGCGCCCCTGGCGATTTTGATGGGTTG
TTCCAGCGGTCGTCTTCGCGCGCCAGGCGCGAGCAGCATCAAACGAGGCA
AAGGCAACGAggtcccgcttccctccaACCGTAGAAGCTCTAGAGATGTC
GGCTGGATCGGCCGTAAAATTCCATTCACGTCTCCAGAGCTATTCGAACC
CACGGGAATGGCGCTTTCCTATTTGGGAGCCGGAAGCCCGGCTGTGGTTG
GTAATTTATGGGACGTGACGGACCGGGACATCGACCGTTTTTGTGTGGCC
TTACTTGAGGAGCTATTTCCAAAAGCCAAAGCATCGACAGCAACGGACGA
GATTCTGGGAGATGAAGGGTTGGTGTTGAAAGGCGAGAGAGCGGTGGAAG
ACAGCAAGGCACTTATCCTTCCGGCAGTAGCCCGGGCCCGGGGTGCGTGT
AAGCTAAGACATCTCGTAGGAGCAGCTCCCGTCGCGTATGGCTTGCCAAG
TGAGCTTGTAGATTAG
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Synonyms
Publications