EWM29559.1, cds1126 (CDS) Nannochloropsis gaditana

Overview
NameEWM29559.1
Unique Namecds1126
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1256177..1256202 +
Alignment locationCM002456.1:1256477..1257233 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29559.1
Productseparin
Orig transcript idgnl|cribi|Naga_100006g40.8648.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1256177..1256202 +
CM002456.1supercontigCM002456.1:1256477..1257233 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR030397SEPARIN_core_dom
IPR005314Peptidase_C50
Homology
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|585112130|gb|EWM29559.1| (separin [Nannochloropsis gaditana])

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MGMFAPPSRTRATLQPTLARLHKQISHAPSPSPLLPSQANQNHPKTQHREVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLPSELVD 260
            MGMFAPPSRTRATLQPTLARLHKQISHAPSPSPLLPSQANQNHPKTQHREVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLPSELVD
Sbjct:    1 MGMFAPPSRTRATLQPTLARLHKQISHAPSPSPLLPSQANQNHPKTQHREVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLPSELVD 260          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|298714769|emb|CBJ25668.1| (separin [Ectocarpus siliculosus])

HSP 1 Score: 152.525 bits (384), Expect = 2.785e-38
Identity = 90/204 (44.12%), Postives = 110/204 (53.92%), Query Frame = 0
Query:   52 WKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            W G+ GEAPTEE + K L+E  VF YCGHG+GEL + R+ VA L + P+A+LMGCSSGRL+  G                                      FEP GMA SYL  GSPAVV NLWDVTD+DIDRF VALLE    K  AS        D G   +G+ A     + +  AVA +R  CK+  ++G APV YG+P
Sbjct: 2166 WSGVEGEAPTEETMAKTLQEVDVFAYCGHGAGELLVGRDTVAGLARCPVAVLMGCSSGRLKGDGD-------------------------------------FEPMGMATSYLAGGSPAVVANLWDVTDKDIDRFSVALLEAFVGKGGAS--------DGG---RGKPA-----STLAHAVAHSRAECKMPFIIGYAPVCYGIP 2316          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|926631173|ref|XP_013781306.1| (PREDICTED: separin-like [Limulus polyphemus])

HSP 1 Score: 135.191 bits (339), Expect = 5.944e-34
Identity = 77/229 (33.62%), Postives = 110/229 (48.03%), Query Frame = 0
Query:   27 HAPSPSPLLPSQANQNHPKTQHREVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            +  +PS  +P    +     +  + W G++G+ P+ + L   L E+ +F+YCGHGSG ++LA E +  L+    ++LMGCSSG+L+  G                                    +  EPTG+ L Y   GSP VV NLWDVTD+DIDRF  +LLE   P  K                    A +   + I  A+  AR ACKL++L+G+APV YGLP
Sbjct:  190 YVLNPSNDIPHTQKKFEEVFKSMKGWNGIVGQKPSNQELASALTENDLFLYCGHGSGRVYLAGESIERLQCRSASVLMGCSSGKLKVFG------------------------------------QQLEPTGVVLQYWLGGSPCVVANLWDVTDKDIDRFTESLLELWLPNWK------------------NEAKDIQASFITAALPVARQACKLKYLIGSAPVIYGLP 364          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|1004137311|gb|KXZ45338.1| (hypothetical protein GPECTOR_56g435 [Gonium pectorale])

HSP 1 Score: 134.035 bits (336), Expect = 6.651e-32
Identity = 85/215 (39.53%), Postives = 109/215 (50.70%), Query Frame = 0
Query:   52 WKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDS--------KALILPAVARARGACKLRHLVGAAPVAYGLPSEL 258
            W+G+ G+ P+   L   L+   +F+Y GHGSGE FL    +  L++    +LMGCSSGRLR  GA                                     ++P+G A++YL AG PA+V NLWDVTDRDIDR+C ALL+         TA D      G      R  ED         +AL L AV+R+R ACKL HLVGAAPV YGLP ++
Sbjct: 1027 WQGVTGQKPSARALLAALQSHDIFLYLGHGSGEQFLPSPALRKLQRCAACVLMGCSSGRLRLHGA-------------------------------------YDPSGAAVAYLLAGCPALVANLWDVTDRDIDRYCQALLDAWLGCGPGLTAGDAETAGGGPSGGQGR--EDKADGPSCRREALGL-AVSRSRAACKLPHLVGAAPVTYGLPLQM 1201          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|302847749|ref|XP_002955408.1| (separase [Volvox carteri f. nagariensis] >gi|300259250|gb|EFJ43479.1| separase [Volvox carteri f. nagariensis])

HSP 1 Score: 130.954 bits (328), Expect = 8.991e-31
Identity = 88/228 (38.60%), Postives = 115/228 (50.44%), Query Frame = 0
Query:   33 PLLPSQANQNHPKTQHREVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLV--LKGERAVED---SKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            P+L +QA+           WKG+ GE P+ + L   L+   +F+Y GHGSGE +L    +  L++    +LMGCSSGRLR  GA                                     ++P+G A++YL AG PA+V NLWDVTDRDIDR+  AL+        AST +       G+    K ER   D   S+ L L AV R+R ACKL HL+GAAPV YGLP
Sbjct: 1899 PILEAQAH-----------WKGITGERPSTQALLTALQSHELFLYFGHGSGEQYLPLPALRKLQRCASCMLMGCSSGRLRLHGA-------------------------------------YDPSGAAVAYLLAGCPALVANLWDVTDRDIDRYAQALMHSWL-GCTASTPSASTGSKCGMAGGAKRERPCSDVGPSEPLGL-AVTRSRSACKLTHLIGAAPVCYGLP 2076          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|1126205985|ref|XP_019636551.1| (PREDICTED: LOW QUALITY PROTEIN: separin-like [Branchiostoma belcheri])

HSP 1 Score: 127.872 bits (320), Expect = 1.148e-29
Identity = 70/204 (34.31%), Postives = 97/204 (47.55%), Query Frame = 0
Query:   52 WKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            W G+ G +PT E     L +  +F+YCGHG+G+++L  ++V  +      +LMGC SGRL   G++                                     E  GMAL+Y+ +G P++V NLWDVTDRDIDRF  ALL+                              DS + +L  V+++R ACKLRHL+GAAPV YG P
Sbjct: 2124 WNGVAGVSPTTEQYISALTDHDMFVYCGHGAGQVYLKGDEVQKITTRATTLLMGCGSGRLFVEGST-------------------------------------EARGMALNYILSGCPSIVANLWDVTDRDIDRFLQALLKSWL-------------------------TSDSNSSLLEFVSQSREACKLRHLIGAAPVVYGFP 2265          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|223993699|ref|XP_002286533.1| (hypothetical protein THAPSDRAFT_260749, partial [Thalassiosira pseudonana CCMP1335] >gi|220977848|gb|EED96174.1| hypothetical protein THAPSDRAFT_260749, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.398 bits (298), Expect = 4.479e-29
Identity = 87/254 (34.25%), Postives = 118/254 (46.46%), Query Frame = 0
Query:    7 PSRTRATLQPTLARLHKQISHAPSP-SPLLPSQANQNHPKTQHREVWKGLIGEAPTEECLKKEL-EESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFE---PTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            PSR +  L P      K +S   S   P L S A +N  +      W+G+I E P+ E + + L EE+ +F+YCGHG GE   +R  V  L +  L    GC SG                                      F+S EL      +G+ALSY+ AG+P VVGNLWDVTDRDIDR+C+ L+E+ F  +   ++                    S   +   VA AR ACKLR++VG+APV YG+P
Sbjct:   53 PSRLKYVLDP-----EKNLSETASTLGPALNSLACKNGWE------WEGVISEMPSPEFMSQTLREENGLFLYCGHGGGENAFSRTQVEQLTRNDLE--SGCRSG--------------------------------------FSSAELHRGCRSSGIALSYIFAGAPCVVGNLWDVTDRDIDRYCLTLMEDFFNPSNDGSSP------------------RSSPFLSKCVADARRACKLRYIVGSAPVCYGIP 237          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|971517283|dbj|GAQ80926.1| (Regulator of spindle pole body duplication [Klebsormidium nitens])

HSP 1 Score: 124.405 bits (311), Expect = 1.768e-28
Identity = 78/206 (37.86%), Postives = 101/206 (49.03%), Query Frame = 0
Query:   52 WKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEE-LFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLPS 256
            W+GL+   P+ E L   L+E  +F+Y GHGSGE FL    +  L+Q   A+LMGCSSGRL   G                                      +EP G  LSYL A SPAVV NLWDVTD DIDRF   +L+  L P++   + ++   G      + E  +   +  I  AVA  R AC L  L+GAAPV YG+P+
Sbjct: 2038 WQGLVNRLPSVEQLLTALQEHDLFVYLGHGSGEQFLPPRSLRRLRQCATALLMGCSSGRLTLRGD-------------------------------------YEPMGAVLSYLMAASPAVVANLWDVTDGDIDRFSKTVLQRWLQPRSGDGSDSENEQGGSRAKWRAEFELPPREECIGSAVADGRAACILPFLIGAAPVCYGVPT 2206          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|816349885|gb|KKK24924.1| (hypothetical protein AOCH_005982 [Aspergillus ochraceoroseus])

HSP 1 Score: 122.094 bits (305), Expect = 9.408e-28
Identity = 71/206 (34.47%), Postives = 96/206 (46.60%), Query Frame = 0
Query:   50 EVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            E W G++   P+E+  K  LE  ++F+Y GHGSG  ++    V  L Q  +  LMGCSSG L   G                                      +EP G  ++YL AG+PA+V  LWDVTD+DIDRF  A  E                   GL+   E + ED+K  +  AVA++R AC L++L GAAP  YG+P
Sbjct: 1955 EGWNGIVNRQPSEDEFKDGLESQSLFLYFGHGSGAQYIRGRTVKRLDQCAVTFLMGCSSGTLTEAGE-------------------------------------YEPYGTPMNYLQAGAPALVATLWDVTDKDIDRFAKATFEHW-----------------GLLASKEESGEDTKVALDAAVAQSRQACVLKYLNGAAPAVYGVP 2106          
BLAST of EWM29559.1 vs. NCBI_GenBank
Match: gi|816339601|gb|KKK18082.1| (hypothetical protein ARAM_005794 [Aspergillus rambellii])

HSP 1 Score: 122.094 bits (305), Expect = 1.043e-27
Identity = 71/206 (34.47%), Postives = 96/206 (46.60%), Query Frame = 0
Query:   50 EVWKGLIGEAPTEECLKKELEESTVFIYCGHGSGELFLAREDVATLKQAPLAILMGCSSGRLRAPGASSIKRGKGNEVPLPSNRRSSRDVGWIGRKIPFTSPELFEPTGMALSYLGAGSPAVVGNLWDVTDRDIDRFCVALLEELFPKAKASTATDEILGDEGLVLKGERAVEDSKALILPAVARARGACKLRHLVGAAPVAYGLP 255
            E W G++   P+E+  K  LE  ++F+Y GHGSG  ++    V  L Q  +  LMGCSSG L   G                                      +EP G  ++YL AG+PA+V  LWDVTD+DIDRF  A  E                   GL+   E + ED+K  +  AVA++R AC L++L GAAP  YG+P
Sbjct: 1955 EGWNGIVNRQPSEDEFKDGLESQSLFLYFGHGSGAQYIRGRTVKRLDQCAVTFLMGCSSGTLTEAGE-------------------------------------YEPYGTPMNYLQAGAPALVATLWDVTDKDIDRFAKATFEHW-----------------GLLASKEESGEDTKVALDAAVAQSRQACVLKYLNGAAPAVYGVP 2106          
The following BLAST results are available for this feature:
BLAST of EWM29559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112130|gb|EWM29559.1|0.000e+0100.00separin [Nannochloropsis gaditana][more]
gi|298714769|emb|CBJ25668.1|2.785e-3844.12separin [Ectocarpus siliculosus][more]
gi|926631173|ref|XP_013781306.1|5.944e-3433.62PREDICTED: separin-like [Limulus polyphemus][more]
gi|1004137311|gb|KXZ45338.1|6.651e-3239.53hypothetical protein GPECTOR_56g435 [Gonium pector... [more]
gi|302847749|ref|XP_002955408.1|8.991e-3138.60separase [Volvox carteri f. nagariensis] >gi|30025... [more]
gi|1126205985|ref|XP_019636551.1|1.148e-2934.31PREDICTED: LOW QUALITY PROTEIN: separin-like [Bran... [more]
gi|223993699|ref|XP_002286533.1|4.479e-2934.25hypothetical protein THAPSDRAFT_260749, partial [T... [more]
gi|971517283|dbj|GAQ80926.1|1.768e-2837.86Regulator of spindle pole body duplication [Klebso... [more]
gi|816349885|gb|KKK24924.1|9.408e-2834.47hypothetical protein AOCH_005982 [Aspergillus ochr... [more]
gi|816339601|gb|KKK18082.1|1.043e-2734.47hypothetical protein ARAM_005794 [Aspergillus ramb... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1127rna1127Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications