rna1125, rna1125 (mRNA) Nannochloropsis gaditana

Overview
Namerna1125
Unique Namerna1125
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length578
Alignment locationCM002456.1:1247011..1248127 +

Link to JBrowse

Properties
Property NameValue
Productmethyltransferase type 11
Orig transcript idgnl|cribi|Naga_100006g42.8613.mrna
Orig protein idgnl|cribi|Naga_100006g42.8613
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1247011..1248127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g42gene1084Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1125rna1125-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29524.1cds1124Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1125 ID=rna1125|Name=rna1125|organism=Nannochloropsis gaditana|type=mRNA|length=578bp
AACATGTAGGCACCATCCATCCTCACGGCTCTTTCTTTCCAGTGGAAGGA
AAAACAGCCATTAACAATTATGTTGTCGCTGGCACAAGCGGTCCAAATTT
GCGAAAATGCAGTCGCTGCATGCCTTACAAAGGGCTTCGCCCCTATCACG
ATAGTAGTGATGGATCCGACCGGACATCCTATAGCAATGCAGCGTATGGA
CGATTGTGCCCCCGCAGCTTTCCCCAAATTTGCGCATGCTAAAGCTTTTA
CTTGTATTTCGCTGGGTGTATCCACGCGTGCTTTTCGGGACAAATACACG
ATTGCCAAGGACCCAACTAAGTATTGTCAAATGCTGGGCATGATAGATGT
GACTGGTGGCCAGATGGCTCCTTTCCCCGGTGGTGTTGTCATCAGAGCAA
GGGAAGGGAAGGTTGTGGGGGCGGTGGGAGTCAGTGGCGCCAGCGCGGAC
GAGGACGAATACTGTGCACTCGCAGGTATAGAGGCAGCTAATCTAGAAGG
CATGTTTACCGAGCCGGTGTGCCATTCACTGAAGGAGAAATGAAAAGAAA
AGATAGAAAAGGATCTTGCCATCAAGGA
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protein sequence of rna1125

>rna1125-protein ID=rna1125-protein|Name=rna1125|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILR
AQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNAT
KGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPE
GVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDY
TPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVL
SARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK
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mRNA from alignment at CM002456.1:1247011..1248127+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1125 ID=rna1125|Name=rna1125|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp|location=Sequence derived from alignment at CM002456.1:1247011..1248127+ (Nannochloropsis gaditana)
GGCTCACTTTTTTTTCCATGATAAAACGACGCATGTTTTCACACTTTCTT
AATCGGACAACCCCTTCCTAGTGGCTGTATCCGGTCTGCTGTGCGTGAAT
TCTCAACGCGGCGGCTCCAATTACCGAAGCCGGTGCGcagacaagggagg
aggtttttCATGAACATCAGCAAGCACAGTCCTGCATTGAATCGTCCCAT
GATAGCCAAAGGCGACCCATTTGGTCGCCCTGCACAGGCGGAGGGCTACT
CAGCATTTCGTCCGAATTATCCCGACGCGTTGATGGCAGGTGTGGAGGTC
ATTCTTCGTGCACAGGGGTGTATGGATAGCAGGGCAAAGGATGGGAGCAT
GCTAGTCGATATTTGTACTGGCTCGGGGCAAGTATTAAGGAAACTAGCAA
GGTATTTCGACCACGCCAAGGGTGTTGATCAAAGCGCTGCCCAATTGACG
AACGCAACAAAAGGATCCAACGTTGAATATTTGCAGGCGGATGCACTTTC
AGTTCCTTTGCCAGATGGCAGCGCATCGGTGGTAACATGCGCTCAAGCAA
TGCACTGGTTGGATATTCCATCCTTTCTGAGAGGCGTGGATAGACTCCTC
CGCCCGGAAGGAGTCTTGGTCGTACTTGGGTATCCCAGGAGTCACATTCC
TAAGATGCCACAGGCCGACGCAGCCATGATCGAATGGTACGCGTCACTGG
ACGATGTCTGGGATTGCGATCGGGCCCTGCTGGACATGGAGTTTGCGGGG
ACAGACTACACTCCCTTCGTCCAATTTAGCAAGCAGAAGGTGGAAGAGAC
GCACATGATGAGTGTGGAGCATTTGGTCGGTTATTTGGACACATGGTCGT
CCTtcaggacgtggaaggagcACCACCCAGACGTGAATCCAGACACATTG
CAGGTGCTGAGCGCGCGCTTGCAGGCAGCTCTCGcagcagagggagaggg
caggacCCTGTTGCCTGTGGAATTCTCTTTTTTTGCCATCTTCTTGCGGC
GTCCTGGGGATGGTAGAGCATCGAAGTGAGGAGAACGTCGCACAGTTTTG
AGGCCCATTGGTGTGTGCCTGTACACGGGAAAGAAATATCTGATTGATGG
TGATATCGCTACTTATG
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Coding sequence (CDS) from alignment at CM002456.1:1247011..1248127+

>rna1125 ID=rna1125|Name=rna1125|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002456.1:1247011..1248127+ (Nannochloropsis gaditana)
ATGAACATCAGCAAGCACAGTCCTGCATTGAATCGTCCCATGATAGCCAA
AGGCGACCCATTTGGTCGCCCTGCACAGGCGGAGGGCTACTCAGCATTTC
GTCCGAATTATCCCGACGCGTTGATGGCAGGTGTGGAGGTCATTCTTCGT
GCACAGGGGTGTATGGATAGCAGGGCAAAGGATGGGAGCATGCTAGTCGA
TATTTGTACTGGCTCGGGGCAAGTATTAAGGAAACTAGCAAGGTATTTCG
ACCACGCCAAGGGTGTTGATCAAAGCGCTGCCCAATTGACGAACGCAACA
AAAGGATCCAACGTTGAATATTTGCAGGCGGATGCACTTTCAGTTCCTTT
GCCAGATGGCAGCGCATCGGTGGTAACATGCGCTCAAGCAATGCACTGGT
TGGATATTCCATCCTTTCTGAGAGGCGTGGATAGACTCCTCCGCCCGGAA
GGAGTCTTGGTCGTACTTGGGTATCCCAGGAGTCACATTCCTAAGATGCC
ACAGGCCGACGCAGCCATGATCGAATGGTACGCGTCACTGGACGATGTCT
GGGATTGCGATCGGGCCCTGCTGGACATGGAGTTTGCGGGGACAGACTAC
ACTCCCTTCGTCCAATTTAGCAAGCAGAAGGTGGAAGAGACGCACATGAT
GAGTGTGGAGCATTTGGTCGGTTATTTGGACACATGGTCGTCCTtcagga
cgtggaaggagcACCACCCAGACGTGAATCCAGACACATTGCAGGTGCTG
AGCGCGCGCTTGCAGGCAGCTCTCGcagcagagggagagggcaggacCCT
GTTGCCTGTGGAATTCTCTTTTTTTGCCATCTTCTTGCGGCGTCCTGGGG
ATGGTAGAGCATCGAAGTGA
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Synonyms
Publications