EWM29524.1, cds1124 (CDS) Nannochloropsis gaditana

Overview
NameEWM29524.1
Unique Namecds1124
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1247170..1248039 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29524.1
Productmethyltransferase type 11
Orig transcript idgnl|cribi|Naga_100006g42.8613.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1247170..1248039 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013216Methyltransf_11
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|585112095|gb|EWM29524.1| (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 600.897 bits (1548), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK 289
            MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK
Sbjct:    1 MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK 289          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|553195985|ref|XP_005856244.1| (methyltransferase type 11, partial [Nannochloropsis gaditana CCMP526] >gi|422292817|gb|EKU20119.1| methyltransferase type 11, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK 289
            MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK
Sbjct:   39 MNISKHSPALNRPMIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAIFLRRPGDGRASK 327          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|545366285|ref|XP_005648050.1| (S-adenosyl-L-methionine-dependent methyltransferase [Coccomyxa subellipsoidea C-169] >gi|384250026|gb|EIE23506.1| S-adenosyl-L-methionine-dependent methyltransferase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 138.658 bits (348), Expect = 6.974e-36
Identity = 87/239 (36.40%), Postives = 123/239 (51.46%), Query Frame = 0
Query:   26 QAEGYSAFRPNYPDALMAGVEVI--LRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWY-ASLDDVWDCDRALLDMEFAGTDYTP--FVQFSKQKVEE-THMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAAL 258
            QA  Y+A+RP YP  L    EVI         DS        +D+ TGSGQ    L+R F     +DQS  QL  A +  N+EY  A A    +P GS ++VT AQA+HW D+P+F R V R+LRPEG     GY          A+AA+   Y  +L   W   R L++ ++ G +  P  F +  +  ++  +  MSV  L+GYL +WS++ T++E HPD+ PD L       +AA 
Sbjct:   11 QASSYAAYRPTYPSGLY---EVIYDFAKLASYDS-------ALDLATGSGQAAAVLSRKFQRVVALDQSEQQLKEAVRLPNIEYGHASAEETGVPGGSVNLVTVAQALHWFDLPAFYREVRRVLRPEGAFAAWGYDLCEFKGNDAANAALEALYNGTLGPYWSDRRRLIEKQYKGLEPGPEHFGEVKRVILDTMSAEMSVSALIGYLSSWSAYATYREQHPDL-PDPLIKFKGAYKAAF 238          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|1153996109|emb|SKB94624.1| (Methyltransferase domain-containing protein [Salegentibacter salinarum])

HSP 1 Score: 132.494 bits (332), Expect = 9.882e-34
Identity = 74/260 (28.46%), Postives = 125/260 (48.08%), Query Frame = 0
Query:   14 MIAKGDPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYAS-LDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEF 272
            M+   D F   + A  Y+ FRP YP  L             + ++  D     D  TG+GQV  +LA +F   K  D S  QL NA K +N++Y    A      D +  ++T AQA+HW +   F +   R+L+P G++ V+GY  S     P+ D  + ++Y   +   WD +R  LD ++    + PF +    + ++ +  S EHL+GYL+TWS+    K H  +   + + ++   L+ A  +  + + + P+ F
Sbjct:    1 MLFMKDNFSTHSSA--YAKFRPTYPQKLYE----------FLQAKLTDTETAWDCGTGNGQVAGELAEFFQKVKATDISKQQLKNAVKKNNIQYSLQGAEKTNFQDNTFDLITVAQAIHWFNFKDFYKEAKRVLKPNGIIAVIGY--SLFNTTPETDEVIRKFYNDIIGPFWDEERRYLDEKYKNIPF-PFHEIETPEFQQEYQWSFEHLIGYLETWSAV---KHHEKETGENPVNLIKNELKTAFGS--QNKIVFPILF 240          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|1160870012|ref|WP_079714411.1| (SAM-dependent methyltransferase [Salegentibacter salinarum])

HSP 1 Score: 132.494 bits (332), Expect = 1.096e-33
Identity = 70/249 (28.11%), Postives = 120/249 (48.19%), Query Frame = 0
Query:   25 AQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYAS-LDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEF 272
              +  Y+ FRP YP  L             + ++  D     D  TG+GQV  +LA +F   K  D S  QL NA K +N++Y    A      D +  ++T AQA+HW +   F +   R+L+P G++ V+GY  S     P+ D  + ++Y   +   WD +R  LD ++    + PF +    + ++ +  S EHL+GYL+TWS+    K H  +   + + ++   L+ A  +  + + + P+ F
Sbjct:    7 THSSAYAKFRPTYPQKLYE----------FLQAKLTDTETAWDCGTGNGQVAGELAEFFQKVKATDISKQQLKNAVKKNNIQYSLQGAEKTNFQDNTFDLITVAQAIHWFNFKDFYKEAKRVLKPNGIIAVIGY--SLFNTTPETDEVIRKFYNDIIGPFWDEERRYLDEKYKNIPF-PFHEIETPEFQQEYQWSFEHLIGYLETWSAV---KHHEKETGENPVNLIKNELKTAFGS--QNKIVFPILF 237          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|831763162|ref|XP_012750790.1| (hypothetical protein SAMD00019534_094110, partial [Acytostelium subglobosum LB1] >gi|735851422|dbj|GAM26236.1| hypothetical protein SAMD00019534_094110, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 132.88 bits (333), Expect = 2.470e-33
Identity = 80/262 (30.53%), Postives = 133/262 (50.76%), Query Frame = 0
Query:   19 DPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNA-TKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASL--DDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEFSFFAI 277
            D FG+   ++ Y  FRP YP  L      +L+       R     +  DI  G+GQ   ++A++F+   G D SA Q+ +A +  SNVEY  + A  +      A ++T AQA HW D+P F   V+RLL+P+G L++  Y    I    + +A  +++Y++   D  W  +R L+D  +      PF   +++++  T  +S+  ++GY  TWS +  +KE +   +P  L  L  RL AAL A  +  T++ + F  + I
Sbjct:   41 DHFGK--VSDSYRTFRPTYPPELFE----VLKKHTANTPR----KLAFDIGCGTGQATVEIAKFFEKVIGFDPSAGQIGSAVSDSSNVEYKVSPAECIDYDGPKADLITVAQAAHWFDLPKFFGEVNRLLQPDGSLIIWCYGTCSITDNDEINAIHMDYYSNTLGDQYWPANRKLIDRNYEDI-IPPFPNTTREQISFTKTLSINSMIGYYGTWSGYNKYKEMNNGQDP--LPSLKQRLIAALGAGADENTMITLRFPVYFI 289          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|1120004508|ref|WP_072879635.1| (SAM-dependent methyltransferase [Salegentibacter echinorum] >gi|1110025955|emb|SHG20075.1| Methyltransferase domain-containing protein [Salegentibacter echinorum])

HSP 1 Score: 131.339 bits (329), Expect = 2.823e-33
Identity = 79/244 (32.38%), Postives = 121/244 (49.59%), Query Frame = 0
Query:   30 YSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYAS-LDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARLQAALAAEGEGRTLLPVEF 272
            Y+ FRP YP  L    E I R     +S         D  TG+GQV R+LA +F   +  D S  QL NA K  N+ Y +  A     PD S ++VT AQA+HW D  SF   V+R+L+P G + ++GY  S      Q DA +  +Y   +   WD +R  LD  +    + PF +      ++ +  S E L+GYL TWS+ + + E+   +NP  ++++   L+ A     + + + P+ F
Sbjct:   12 YAKFRPTYPKELY---EFIKRNLEVTNS-------AWDCGTGNGQVARELAEFFSRVEATDISVQQLKNAIKKPNITYSRQPAEKTNFPDNSFNLVTVAQAIHWFDFDSFYTEVNRVLKPGGFITIIGY--SLFKSTAQTDAVIASFYKDIIGPWWDEERRYLDEHYKNLTF-PFNELEAPGFQKEYEWSFEQLIGYLKTWSAVKHY-ENAKGINP--VELIKTELKTAFGE--KNKVVFPILF 237          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|939363979|ref|WP_054908886.1| (MULTISPECIES: SAM-dependent methyltransferase [Pseudomonas] >gi|1042865239|gb|OBY92041.1| SAM-dependent methyltransferase [Pseudomonas sp. AU11447])

HSP 1 Score: 129.798 bits (325), Expect = 1.274e-32
Identity = 77/227 (33.92%), Postives = 117/227 (51.54%), Query Frame = 0
Query:   28 EGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARL 254
            + Y+ FRP YP  L +          C+ S A D S+ VD+  GSGQ+ R+LA +F    G D SA Q+ +A   +N+ Y  A A  +PL D SAS++T AQA HW D+P F   V R+  P+ VL ++ Y   H+   P        W   +   W  +R L+D  +A  D+ PF +F   ++      +++  +GY+ TWS+ R+ +E   +   D LQ  +A L
Sbjct:   17 QAYARFRPEYPAELAS----------CLASLAPDRSLAVDVGCGSGQLTRQLAEHFSSVAGFDPSAEQIAHAAPRANLSYACAQAEELPLADRSASLITAAQAAHWFDLPKFYAEVRRIAEPDAVLALISYGVLHLDGDPGKRFETFYW-QEIGPYWPAERKLVDSGYATLDF-PFAEFPGPEIAIRLEWTLDEFLGYVSTWSAVRSAREAGRE---DLLQHFAADL 228          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|746038294|ref|WP_039109918.1| (SAM-dependent methyltransferase [Flavobacterium sp. AED] >gi|742429834|gb|KIA85898.1| SAM-dependent methyltransferase [Flavobacterium sp. AED])

HSP 1 Score: 127.872 bits (320), Expect = 5.934e-32
Identity = 72/214 (33.64%), Postives = 109/214 (50.93%), Query Frame = 0
Query:   19 DPFGRPAQAEGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASL-DDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSS 231
            D F +  QA  YS FRP YPD ++            + S  K+ S+ +DI TG+GQV  KL+R+F    G+D S  QL NA    N+ Y  A A +    +    ++T AQA+HW D   F + + R+L+PEG+  VLGY          +D  +  +Y ++    WD +R  LD  +    + PF +   +  E   + + E L+GYL+TWS+
Sbjct:    3 DNFSK--QALEYSKFRPQYPDEMI----------DYLVSFVKNKSIALDIATGNGQVAHKLSRFFKTVYGIDISQNQLDNAISAQNIIYKIAAAENTFFKNSEFDLITVAQAIHWFDFDLFYKEIYRILKPEGIFAVLGY--GLFATNADSDKIIQNFYYNIVGPYWDAERKYLDENYKTIPF-PFDEIVAKPFENHFIWTFEELIGYLETWSA 201          
BLAST of EWM29524.1 vs. NCBI_GenBank
Match: gi|639926893|ref|WP_024763777.1| (MULTISPECIES: SAM-dependent methyltransferase [Pseudomonas] >gi|1042729448|gb|OBY57503.1| SAM-dependent methyltransferase [Pseudomonas sp. AU12215])

HSP 1 Score: 127.872 bits (320), Expect = 7.881e-32
Identity = 76/227 (33.48%), Postives = 116/227 (51.10%), Query Frame = 0
Query:   28 EGYSAFRPNYPDALMAGVEVILRAQGCMDSRAKDGSMLVDICTGSGQVLRKLARYFDHAKGVDQSAAQLTNATKGSNVEYLQADALSVPLPDGSASVVTCAQAMHWLDIPSFLRGVDRLLRPEGVLVVLGYPRSHIPKMPQADAAMIEWYASLDDVWDCDRALLDMEFAGTDYTPFVQFSKQKVEETHMMSVEHLVGYLDTWSSFRTWKEHHPDVNPDTLQVLSARL 254
            + Y+ FRP YP  L +          C+ S A D ++ VD+  GSGQ+ R+LA +F    G D SA Q+ +A   +N+ Y  A A  +PL D SAS++T AQA HW D+P F   V R+  P+ VL ++ Y   H+   P        W   +   W  +R L+D  +A  D+ PF +F   ++      ++   +GY+ TWS+ R+ +E   +   D LQ  +A L
Sbjct:   17 QAYARFRPEYPAELAS----------CLASLAPDRALAVDVGCGSGQLTRQLAEHFSSVVGFDPSAEQIAHAAPRANLSYACAQAEELPLADRSASLITAAQAAHWFDLPKFYAEVRRIAEPDAVLALISYGVLHLDGDPGKRFETFYW-QEIGPYWPAERKLVDSGYATLDF-PFAEFPGPEIAIRLEWTLHEFLGYVSTWSAVRSAREAGRE---DLLQHFAADL 228          
The following BLAST results are available for this feature:
BLAST of EWM29524.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112095|gb|EWM29524.1|0.000e+0100.00methyltransferase type 11 [Nannochloropsis gaditan... [more]
gi|553195985|ref|XP_005856244.1|0.000e+0100.00methyltransferase type 11, partial [Nannochloropsi... [more]
gi|545366285|ref|XP_005648050.1|6.974e-3636.40S-adenosyl-L-methionine-dependent methyltransferas... [more]
gi|1153996109|emb|SKB94624.1|9.882e-3428.46Methyltransferase domain-containing protein [Saleg... [more]
gi|1160870012|ref|WP_079714411.1|1.096e-3328.11SAM-dependent methyltransferase [Salegentibacter s... [more]
gi|831763162|ref|XP_012750790.1|2.470e-3330.53hypothetical protein SAMD00019534_094110, partial ... [more]
gi|1120004508|ref|WP_072879635.1|2.823e-3332.38SAM-dependent methyltransferase [Salegentibacter e... [more]
gi|939363979|ref|WP_054908886.1|1.274e-3233.92MULTISPECIES: SAM-dependent methyltransferase [Pse... [more]
gi|746038294|ref|WP_039109918.1|5.934e-3233.64SAM-dependent methyltransferase [Flavobacterium sp... [more]
gi|639926893|ref|WP_024763777.1|7.881e-3233.48MULTISPECIES: SAM-dependent methyltransferase [Pse... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1125rna1125Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications