rna1124, rna1124 (mRNA) Nannochloropsis gaditana

Overview
Namerna1124
Unique Namerna1124
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1406
Alignment locationCM002456.1:1246229..1246920 -

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Properties
Property NameValue
Productprotein of unknown function DUF336
Orig transcript idgnl|cribi|Naga_100006g43.8638.mrna
Orig protein idgnl|cribi|Naga_100006g43.8638
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1246229..1246920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g43gene1083Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1124rna1124-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29549.1cds1123Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1124 ID=rna1124|Name=rna1124|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp
GCTCACAATTCTTGCTTACCAGATCCCCCCACTTCCCTGCCTGGTTCAAC
ACTTTCTCGAGTCCGCAGGTACACCTGGTATCTCTGCTTTTGAACATATG
ATAGATCAGATTGAATCTCATGCATATGTCTCGTCTCATTCACAAATCTA
GGGAGACAGAGCCGAATTCGCAAGTGGTGGCGGCATGACGACTACTATGG
AGAGTGACGGGGGTAGCGTTATGATGGAAGACATACAGGAGAACGACAAG
CAATCGGAATTGAAACCTGGCATAATGGGAGTGCGAGGGAGCCTCAGGAG
TCGAAGACGTGAGGGGGAAGAGGATGCGGATAGCAACGCGAATAACAACA
GCAACGCAAGCGTTAATACTACGATTATAAATGCGGGACATAATGACAAG
GAGTCGGTAGGGCGTAGCAGCGCGCGGATAAAAAATAGTGCGGAACGAGA
CAGCACATCTAGTGGTCCTAGTGGCAACACGACAAGCACGAGCGCAGGCA
GCAACAAACGCAGCAAAGTAGAAGGTGTCGGTAGTGGTGGGGGGAAAGGG
AAGCCGGTGGAACGTTGGCGGGCGCAAAGAATGGCGGAGGACTACGTGAA
TCTCGTCGGGGATCTCATGTACCCCAAAGTTTCTTTTGGTCCTTATGGCT
ATGACATGGCCAAAGGGGAAATCCCGTTGGAAAGACCCAACACCTTGGGC
GTTCTGATGTGCCCTGCACGACGACGGACGGTGATGGAGCACTGGAGCCC
TTTCGAGGTGGCGTGCTTCGAAGGTGCCATAGTCTTGGTGGGTAAGAACT
TTTATGAGATCTCCAAATTGCTTCCGAGCAAATCCACGAAGGAGTGCATT
GAGTTTTACTACGTCTGGAAGATGACCAGCCACTACCAGCAGTGGAAGCG
AAGTTTTGAGCCCCTGGACCCCCATCCGTTCTCGATTTTGCCTCCGGATG
AGTGAGAAAGTTTCAGGGGGGTGCAATCCGAGCAAGAGAGAATGGAGGCG
CAAAACATGTGGGTGGACGACAGGCCAATTTGTACATTCAAAATGTTAGA
TTGAGTGACGAAAAGATCACGATTAATGGAAAAAGAGGTAAAGCGGTCAG
AGGTAGTCTCTACAATGACAAGAGACGGGTGAGGACGAGACGAGGGGGTA
ACAGAAGAGCATCTGTCTTTGTGAGGGACGGAGAAAGATGAGAGCGTACA
TGCGACAGACTGGAAGGGACGCAGCTTTGACAGATGAGTGGAAATTGTAT
TTCAAAAAGCTACGGAAAGGAGAAACACTTCCAGCGAATATTGTGCAATG
TCATCTCACGTCCTTGATGGCAAGATCCTTTTCTATCTTTTCTTTTCATT
TCTCCTTCAGTGAATGGCACACCGGCTCGGTAAACATGCCTTCTAGATTA
GCTGCC
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protein sequence of rna1124

>rna1124-protein ID=rna1124-protein|Name=rna1124|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MLSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAA
FPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMA
PFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPV
CHSLKEK
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mRNA from alignment at CM002456.1:1246229..1246920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1124 ID=rna1124|Name=rna1124|organism=Nannochloropsis gaditana|type=mRNA|length=692bp|location=Sequence derived from alignment at CM002456.1:1246229..1246920- (Nannochloropsis gaditana)
AACATGTAGGCACCATCCATCCTCACGGCTCTTTCTTTCCAGTGGAAGGA
AAAACAGCCATTAACAATTATGTTGTCGCTGGCACAAGCGGTCCAAATTT
GCGAAAATGCAGTCGCTGCATGCCTTACAAAGGGCTTCGCCCCTATCACG
ATAGTAGTGATGGATCCGACCGGACATCCTATAGCAATGCAGCGTATGGA
CGATTGTGCCCCCGCAGCTTTCCCCAAATTTGCGCATGCTAAAGCTTTTA
CTTGTATTTCGCTGGGTGTATCCACGCGTGCTTTTCGGGACAAATACACG
ATTGCCAAGGACCCAACTAAGTATTGTCAAATGCTGGGCATGATAGATGT
GACTGGTGGCCAGGTAAGTTTCGATGTTTAGTGAATTATTCTCGATTTCT
GTGCACATTTGAGGCTTACTTTTCTCTCTCCTCCTTTGTGCCATGCTTCG
ACCTTCTGCTTTTCCTATTTGCGCCAGATGGCTCCTTTCCCCGGTGGTGT
TGTCATCAGAGCAAGGGAAGGGAAGGTTGTGGGGGCGGTGGGAGTCAGTG
GCGCCAGCGCGGACGAGGACGAATACTGTGCACTCGCAGGTATAGAGGCA
GCTAATCTAGAAGGCATGTTTACCGAGCCGGTGTGCCATTCACTGAAGGA
GAAATGAAAAGAAAAGATAGAAAAGGATCTTGCCATCAAGGA
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Coding sequence (CDS) from alignment at CM002456.1:1246229..1246920-

>rna1124 ID=rna1124|Name=rna1124|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002456.1:1246229..1246920- (Nannochloropsis gaditana)
ATGGCTCCTTTCCCCGGTGGTGTTGTCATCAGAGCAAGGGAAGGGAAGGT
TGTGGGGGCGGTGGGAGTCAGTGGCGCCAGCGCGGACGAGGACGAATACT
GTGCACTCGCAGGTATAGAGGCAGCTAATCTAGAAGGCATGTTTACCGAG
CCGGTGTGCCATTCACTGAAGGAGAAATGAATGTTGTCGCTGGCACAAGC
GGTCCAAATTTGCGAAAATGCAGTCGCTGCATGCCTTACAAAGGGCTTCG
CCCCTATCACGATAGTAGTGATGGATCCGACCGGACATCCTATAGCAATG
CAGCGTATGGACGATTGTGCCCCCGCAGCTTTCCCCAAATTTGCGCATGC
TAAAGCTTTTACTTGTATTTCGCTGGGTGTATCCACGCGTGCTTTTCGGG
ACAAATACACGATTGCCAAGGACCCAACTAAGTATTGTCAAATGCTGGGC
ATGATAGATGTGACTGGTGGCCAGATGGCTCCTTTCCCCGGTGGTGTTGT
CATCAGAGCAAGGGAAGGGAAGGTTGTGGGGGCGGTGGGAGTCAGTGGCG
CCAGCGCGGACGAGGACGAATACTGTGCACTCGCAGGTATAGAGGCAGCT
AATCTAGAAGGCATGTTTACCGAGCCGGTGTGCCATTCACTGAAGGAGAA
ATGAATGTTGTCGCTGGCACAAGCGGTCCAAATTTGCGAAAATGCAGTCG
CTGCATGCCTTACAAAGGGCTTCGCCCCTATCACGATAGTAGTGATGGAT
CCGACCGGACATCCTATAGCAATGCAGCGTATGGACGATTGTGCCCCCGC
AGCTTTCCCCAAATTTGCGCATGCTAAAGCTTTTACTTGTATTTCGCTGG
GTGTATCCACGCGTGCTTTTCGGGACAAATACACGATTGCCAAGGACCCA
ACTAAGTATTGTCAAATGCTGGGCATGATAGATGTGACTGGTGGCCAG
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Synonyms
Publications