EWM29549.1, cds1123 (CDS) Nannochloropsis gaditana

Overview
NameEWM29549.1
Unique Namecds1123
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1246558..1246851 -
Alignment locationCM002456.1:1246264..1246443 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29549.1
Productprotein of unknown function DUF336
Orig transcript idgnl|cribi|Naga_100006g43.8638.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1246558..1246851 -
CM002456.1supercontigCM002456.1:1246264..1246443 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005624DUF336
Homology
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|585112120|gb|EWM29549.1| (protein of unknown function DUF336 [Nannochloropsis gaditana])

HSP 1 Score: 322.398 bits (825), Expect = 1.264e-111
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MLSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPVCHSLKEK 157
            MLSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPVCHSLKEK
Sbjct:    1 MLSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPVCHSLKEK 157          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|397620997|gb|EJK66045.1| (hypothetical protein THAOC_13052 [Thalassiosira oceanica])

HSP 1 Score: 140.969 bits (354), Expect = 3.727e-39
Identity = 68/152 (44.74%), Postives = 96/152 (63.16%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANLEGMFTEPVCHS 153
            ++L  A ++ +  +      GFAPI + V+D   + I  +RMD    AAFP+F+ AKAFTC+++  S+R FRDKYT   DP K  Q+  M+ +    MA FPGGV+++   G VVGA+GVSGA+ DEDEYCAL  +  + L G+ T+P  HS
Sbjct:   68 MNLELADKLADRVIETAKRNGFAPIVVSVLDSNANQIVQKRMDGPVHAAFPEFSRAKAFTCVTMKTSSREFRDKYTADGDPAKMLQLTSMMSI--ADMAAFPGGVLVKNMSGDVVGAIGVSGAAGDEDEYCALRSVWDSGL-GLTTQPTEHS 216          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|1199036710|ref|WP_087142404.1| (GlcG protein [Crenothrix polyspora] >gi|1148283030|emb|SJM90122.1| conserved hypothetical protein [Crenothrix polyspora])

HSP 1 Score: 107.842 bits (268), Expect = 4.768e-27
Identity = 58/138 (42.03%), Postives = 87/138 (63.04%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEA 139
            L+L QA QI   A+        AP+T+VV+D  GH  AMQR +D A     + A AKA+  +++GVS+R+     T+A     +  M  ++DV GG++ P PGGV+IR  +  ++GAVG+SG  +D+DE+CA+AGIE+
Sbjct:    4 LTLKQANQIINTALNMARRLNMAPVTVVVLDVAGHLKAMQR-EDGASMIRQQIATAKAWGAVNMGVSSRSL---ATVAIQRPDF--MNALVDVAGGKIMPVPGGVLIRDSDNNLIGAVGISGDVSDQDEHCAIAGIES 135          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|1199041154|ref|WP_087146667.1| (GlcG protein [Crenothrix polyspora] >gi|1148277889|emb|SJM91751.1| conserved hypothetical protein [Crenothrix polyspora])

HSP 1 Score: 105.916 bits (263), Expect = 2.324e-26
Identity = 60/140 (42.86%), Postives = 86/140 (61.43%), Query Frame = 0
Query:    1 MLSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAA 140
            +L+L  A QI + A+        AP+TIVV+D  GH  AMQR +D A     K A AKA+  +++GVS+R+      +A     +  M  ++DV  G++ P PGGV+IR +E  +VGAVG+SG  +D+DE CA+ GIEAA
Sbjct:    3 VLTLKHANQIIQTALGKARQLNLAPLTIVVLDVAGHLKAMQR-EDGASMIRQKIATAKAWGAVNMGVSSRSL---AGVALQRPDF--MNALVDVAEGRIMPVPGGVLIRDKENNLVGAVGISGDVSDQDEQCAIVGIEAA 136          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|1212744984|ref|WP_088619573.1| (GlcG protein [Methylovulum psychrotolerans] >gi|1211200916|gb|ASF46701.1| GlcG protein [Methylovulum psychrotolerans])

HSP 1 Score: 103.605 bits (257), Expect = 1.805e-25
Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEA 139
            L+L QA QI  +A+A        P+T+VV+D +GH  A+QR +D A     + A AKA+  +++GVS+R      T+A+    +  M  +I +  G++ P PGGV+IR  +  ++GAVG+SG  +D+DE CA+AGIEA
Sbjct:    4 LTLQQANQIINHAIAIARELNMNPLTVVVLDSSGHLKALQR-EDGASMIRQQIATAKAWGAVNMGVSSRGLE---TVAQQRPDF--MNALITIADGKIMPVPGGVLIRDADNHLLGAVGISGDKSDQDERCAIAGIEA 135          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|788041236|ref|WP_045778579.1| (heme-degrading domain-containing protein [Methylococcaceae bacterium Sn10-6] >gi|785927571|gb|KJV07206.1| GlcG protein [Methylococcaceae bacterium Sn10-6])

HSP 1 Score: 103.605 bits (257), Expect = 1.926e-25
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIE 138
            LSL QA QI   A+        AP+T+VV+D  GH  AMQR +D A     + A AKA+  +++GVS+R+      +A+   ++  M  ++ ++ G++ P PGGV+IR  E K++GAVG+SG  +++DE CA+AGIE
Sbjct:    4 LSLKQANQIINTAIHVARELNLAPLTVVVLDTAGHLKAMQR-EDGATVIRQQIAIAKAWGAVNMGVSSRSL---AAVAEKKPEF--MNALVSISDGKIMPVPGGVLIRDAENKLLGAVGISGDVSEQDERCAIAGIE 134          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|928976148|ref|WP_054000569.1| (heme-degrading domain-containing protein [Ahrensia marina] >gi|928223692|gb|KPA99856.1| GlcG protein [Ahrensia marina])

HSP 1 Score: 103.219 bits (256), Expect = 3.279e-25
Identity = 55/141 (39.01%), Postives = 90/141 (63.83%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANL 142
            L+L++A +I  +A+A     G  P+T+VV+D  G  IAMQR +D +    P+ A  KAF CI+ GV +R     +  A+  T+   + G+ +V+GG++   PGGV+++ + G+++GAVG++G ++D DE  A+AGIE A L
Sbjct:    4 LTLSKANKIIRDALAKGKELGLKPLTVVVLDAGGAMIAMQR-EDGSSHLRPEIAAGKAFGCIAAGVGSR-----WLNAQAETRPHFLEGLSNVSGGRIVAVPGGVLVKTKTGEIIGAVGITGDTSDNDETAAVAGIEGAGL 138          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|1088605462|gb|OHE21920.1| (GlcG protein [Syntrophus sp. GWC2_56_31] >gi|1088620075|gb|OHE34648.1| GlcG protein [Syntrophus sp. RIFOXYC2_FULL_54_9])

HSP 1 Score: 102.449 bits (254), Expect = 5.058e-25
Identity = 54/141 (38.30%), Postives = 86/141 (60.99%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANL 142
            L+L++A QI + A+       FAP+T++V+D  GH   ++R D C+    P+ A  KA+  + +G   R    +   AK P  +  +    D++GG+M P PGGV+IR+  G+++G+VG+SG ++D DE CA+ GI AANL
Sbjct:    4 LTLSEANQIADKALEKGRELNFAPLTVIVLDAGGHTKVLKREDGCS-LLRPEIAMGKAWGTLGMGFGGRELARRG--AKMPGFFSAL---SDMSGGRMVPVPGGVLIRSEAGEILGSVGISGDTSDNDETCAVYGIRAANL 138          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|874095694|ref|WP_048649501.1| (heme-degrading domain-containing protein [Nitratireductor soli])

HSP 1 Score: 102.449 bits (254), Expect = 5.920e-25
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAANLE 143
            +SLAQA  I + A+A    +GFA +T+ V+DP GH +AM+R DD         A +KA+  + +G S+R    +   AK P  Y  +   ++V  G++ P PGGV++    G ++GAVG+SG S D DE CA+AGIEAA L+
Sbjct:    4 ISLAQADTIIDTAIATRKREGFAALTVAVLDPGGHLVAMKREDDSG-ILRADIATSKAWGALGMGFSSREIGARA--AKAPAFYGAL---VEVARGRLVPGPGGVLVYDGGGMLIGAVGISGDSGDNDEVCAIAGIEAAGLK 139          
BLAST of EWM29549.1 vs. NCBI_GenBank
Match: gi|652904467|ref|WP_027158700.1| (heme-degrading domain-containing protein [Methylobacter luteus])

HSP 1 Score: 101.679 bits (252), Expect = 1.209e-24
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 0
Query:    2 LSLAQAVQICENAVAACLTKGFAPITIVVMDPTGHPIAMQRMDDCAPAAFPKFAHAKAFTCISLGVSTRAFRDKYTIAKDPTKYCQMLGMIDVTGGQMAPFPGGVVIRAREGKVVGAVGVSGASADEDEYCALAGIEAA 140
            L+L +A QI + A         AP+T+VV+D  GH  AMQR +D A     + A AKA+  +++G+S+R+   +    + P     ++GM D   G++ P PGGV+IR     ++GAVG+SG  +D+DE CA+AGIEAA
Sbjct:    3 LTLEKANQIIQGATRKARQLKLAPLTVVVLDKAGHLKAMQR-EDGATVIRQQIATAKAWGAVNMGISSRSL--EAVAEQRPEFMSALVGMTD---GKIMPVPGGVLIRDEGNNLIGAVGISGDVSDQDERCAIAGIEAA 135          
The following BLAST results are available for this feature:
BLAST of EWM29549.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112120|gb|EWM29549.1|1.264e-111100.00protein of unknown function DUF336 [Nannochloropsi... [more]
gi|397620997|gb|EJK66045.1|3.727e-3944.74hypothetical protein THAOC_13052 [Thalassiosira oc... [more]
gi|1199036710|ref|WP_087142404.1|4.768e-2742.03GlcG protein [Crenothrix polyspora] >gi|1148283030... [more]
gi|1199041154|ref|WP_087146667.1|2.324e-2642.86GlcG protein [Crenothrix polyspora] >gi|1148277889... [more]
gi|1212744984|ref|WP_088619573.1|1.805e-2540.58GlcG protein [Methylovulum psychrotolerans] >gi|12... [more]
gi|788041236|ref|WP_045778579.1|1.926e-2540.88heme-degrading domain-containing protein [Methyloc... [more]
gi|928976148|ref|WP_054000569.1|3.279e-2539.01heme-degrading domain-containing protein [Ahrensia... [more]
gi|1088605462|gb|OHE21920.1|5.058e-2538.30GlcG protein [Syntrophus sp. GWC2_56_31] >gi|10886... [more]
gi|874095694|ref|WP_048649501.1|5.920e-2541.55heme-degrading domain-containing protein [Nitratir... [more]
gi|652904467|ref|WP_027158700.1|1.209e-2440.29heme-degrading domain-containing protein [Methylob... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1124rna1124Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications