rna1120, rna1120 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1120
Unique Name	rna1120
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4411
Alignment location	CM002456.1:1237058..1238474 +

Link to JBrowse

Properties


Property Name	Value
Product	peptide chain release factor 1
Orig transcript id	gnl\|cribi\|Naga_100006g47.8675.mrna
Orig protein id	gnl\|cribi\|Naga_100006g47.8675
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1237058..1238474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g47	gene1079	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1120	rna1120-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29586.1	cds1119	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1237058..1238474+
coding sequence from alignment at CM002456.1:1237058..1238474+

mRNA sequence

>rna1120 ID=rna1120|Name=rna1120|organism=Nannochloropsis gaditana|type=mRNA|length=4411bp
GTCAGGAGTCATCAGGTCTTTCCCGGGTTGAAAGTAAAGAAATCGCGCCC
GTTCACTTCGACATTCGATTACCCTGGCCTTCGATAACACGTTGAATCAT
GGCGTGTATTGATCGCGGGAGTGTCGAATTTCTTCTGAGGGTCTTAATAT
TTACAACGACCGTGCAGTACGCATTCGCCGAGACGATTACGGCATCCCGG
ACACTCTGCTCTTTGCACAGCGTTCTATTTCCAACCGGCGCGGATGCAGC
AGGAAAAGCTGCCGGGGAGCAAATGGCTGATTTGCACTGGAAAGCGTTGG
AGCCTGGTAAGCCACCTAAAGCCCTGGATGTAGCACCTATGGTGGTCGCC
AAAGAGGACGCCCCATCCAAGGATTTGATTTCTGAGCCTGAAAAAAAGCC
CGGCGGTGGCGGTAGTCTCAGTCTATCGACCAGCCAGTGGATCGCTGGCT
TCTCTGCAACCGCATCCATTTACCGATTTCACCAAAGCTTTACGCTCCCA
GCTGAGGCGGATGTAAAATCAGCTCGGATCGAGGTGGCCTTCGCAGCGGA
CGCGGCTGTCGTTGCGCTCCTGTTGAACGACGTGAACATATGGACATGCG
AAGACCCCGTCATGGGCCTCGCCCCCGGCACCCTCGCCGCCAGTATCACC
CTGCCAAAATTGAAGGAGCGAACGAACAGACTTTCTTTGGTAGTGCTCCC
GAGCGGTCCCGGTAAGCCGGCTCTACTGAATGTCTGGTTCCCTGTCGCCA
CCTACGAAGCGGTAGGGACGGCGTGTGGAAGAGACGCCTTGGGTGAGCCA
TTGCGGGCGCTCACGGAAAAGGTCGTGGAGGGAATAAAACCAGCATTTGA
AGCGGTGCCGCAATCTTTGGCTACCCCAACCTTGTACGTGGTGGACGATG
GCAGCTTTACCACGCCTCTAGAGGAAGAAGAGGAAGAGACCGGGTGTGGA
ATCCCGAGTTTGCAACCCACCGACAACGCATCCGCCTGGAAGGTTTGGTT
TCGTGCTCTCAAAGGGGCGGCACAAGGCCCTTGGGATCCCGTGGTGGAGC
CAAAAGCTTGGCTCAGCTTGAGCAAACCGAGCTTGGCGAATGTCTTGTTT
TACGAAACAACTTTCACCCTCGCGCCCGACGCGATATTAGAGGATGTGAG
CGTCGTGGGGCGCCATGAAAGTATGCTGACAGTGTTAGCCGTGTACTTGA
ATAAAAGGCCTGTGTGGGTAAATCCCGACCCTTTTTCTTCCGCCGGAGCG
GCCATGGAGGAGCAGGCCGGACGGGACACAAGCACCTTGTTCACCATTGA
GGACGATTGGGAGGACGAGGGAGAGGATTTGGAACCTGAAACCCTGTGGC
GGCACGGGACGAATATTTTGTCGTTTGCGGTGTTGGCAGATGCTCAGGCC
GATTTCCGCACGGCTTTTCGAGTCAATTTTGCTGGCCTTTCCCATGGAGG
TTGCCCCGACAAATTCCCCGATCGAGAAGAAGCTCCCCATTATCGTACCA
CGTCCCTTCCCGAGATGAGTCCAGCGACAGGTATGTGCAGCGCGGCCGTC
CGCACGGCTCTGCAGCTGGATTTGGGCAATGTGAGCGTTAAATTTAGGGA
CATGGCTGTGGACGCGGTGGGCGAGATGATGTATGTGGCATGGGAAAACG
CAGACGGAAATGCGACTTTGTCTCGTATTGTATTGACAGAGGGACAGCAG
AAAGGTCTCCCGTCGCTCGGATGGCCCTTGGCCACATTGGTAGCACCGGA
AGCGGTGGCGATGGGCTCGAATGGCGAGGTGTACGTGGTGGATGAGATGA
TGATCAAAGGGTTCAGCAGGACAGGGGAAGTACTGGGCGCTTGGGGCCCT
GTGGAAGGATCTCGAGGTCTGGCCGTCTTTCCTTTCGCAGGGAAGGGGAA
CGAGACCGAGGTGTACGTCCTCACTGAGTATGACGGTGTTATGGGCTTCA
ACACTGCGACAAATGAGACGGTGCGCCTGGCAGGTTGTTGGTCTGTGCTC
GGAGAGGCGAAAGGGGGTAAAGGGAAGGGGGAAGAGGGCCTGAACATCGA
GGAGAAGTGCTTGGATATGCCTGTCGATATAGCGATTTCTTTTACGGGAA
CTGGTTTGGATGTGCAGGCAATATTGTGGGTTCTGGATCAAGGTACGAGC
ACCGTAGAACTTTTCACGCGAGATGGTGTGCACCTGTCCACCCTGGGCGG
GGAGGAGGGCTTCCTGGAGACCCCTTCCGTGATCAGTGTCGACTCGTTCC
GTGGCCTGGCGTACGTGATGGATGAGGGTCTGCAGCAGCTGGTGGTAATG
GACCGACAAGGACAGGTCTGGCACCGGATGGGGGTCCGCGATGGGGAAGA
GGATTGCCCTGGAATCCGGACACAACGCTTCTTCGACAGTATGAGCACCC
GAGGGTTCTTGACCCCTGTTCAGCTTGACTTCCCTGTAGAGGTGGGAACA
CCATTTGCGGTGGGGCGTTCATCTTTCTTTACCGGCGTGCGCTTCTACCG
CGCGTCTGGAGAGACGGGTGAACATACGGCCACGCTGTGGACTCCGCAAG
GCGTGGCGCTCGCCACCATTGTATTTCCTGTGGAAAAGGCGGGAAAAGAA
GGGTGGTGTCTGGCTAGTTTGGCAACGCCTGTCGAGCTGGAAGCAGGGGT
CGAATATATTGTCTCGCTCAATCTCAATCGATGGGCCGTGGGCATCTTGC
CTTACTTCCCCCATAATAATCTTACGATTGCCACGGTTTGGGATGGGGCG
TGGAGTGCATTGGACAACGGGGAGGACCTCTCTTCAGCAAGGAGGCCCGT
GATGAACGAGGCCGCAGGCAGCTTCCCCGCGAAAAGTCTGGACGTGTACT
ACATTGACGTGGAGGTGGAGGCTGCCAAACCAACATTCTCTGGGGGAGTG
GTGGGTACTGTGGCGTCGGTTTTCCGGGAGGTGGACGCCGCCGCATTCCC
GTCTTCGCTTTTCTACATGAACCACAACTCAAACTCCATGTCCGAGCAAT
TGCACGCGCTCCGCTTTTCGGGGTATCCGGCCTTCATGGGCGACTGTGCT
CATCACTTGGCCCAGGTCCCTCAGAGCCTCCTCGCTGACCTGCGCGTGGC
CCTTGGGAAAATGAAGCCCCTGGGAATCACTTTTTGGGGCGGATCCTACT
CACTGGACCCAAGCAAAGACTATCTCGCTGAAGGTGCCGCTCTGGCGAGG
GAGGCTGGGGCTGAAAGTATAGGAATTTACATGGGCGGAGAGATGCCCCC
TTCTCTCCTCTACCCATTCAATGCACCTGCTTGGCCCATGGGATCGCCAA
GTTCCCTCACAGAACTAGCCAAGTTGCCCTATTATGAGTCCCTCTTCGCC
AACCCGGCAATCAAAACATATGTCATCAACGCGAAGGCAGTGTCGACCGT
TGGTCTGAACTTGAAACTTCGATTCGACACCTATTCCGCTGCGGATGCCG
CGAAGGAAACGGAGGAATTCCGTGAGCTCACTTCGTATTTGGCTGAGACC
TATAAAGGCTCTGGGAAAACTTTCATACTTCAGGCCTGGTCTCTCGACCA
CTTTTTGAGCGACGATGACCAAAAGGAAATCCCCCCCGCTTTGGCGTCGC
GCGCCGCCACCTGGCTGAAGGCGCGTCAAGCGGGCGTGGAGGCTGGCAGG
GACGACGTGGGTGAACCTGCGTCTTCTGTTGCGATCTACCATGCCGTGCA
AGTAGACCGAGGAATCCTGGCCAAGACACACGGGGAAACAACAGGTTGGG
CGGTCGACCGGATCCTGCCTATCATCACCACGGATCTCGTGGGCTGGTCA
GCATACGAGACAAGCCGTAGCGTCGACCCTGCGTCATCGATGGCGTCTGG
CGTGGCGAGCCTGAATAGAGCAGTACGGTTCTCTTCCACAAACTACTCCC
TGGATGGATTACGATTTCCAGACCCCGCCGCTGATGAGATAAGGGTCTAT
CTGGCCGAGATTGGCGAGCCGGATGCAGGCCTCAGTGGTATGCCTGAACG
CGCCAAGATAGTGATTCCTGGTATGACTAAGGGGGCTGTGATGGCCAACG
TGCCTATTGCTTTGCTCTGGGCTGGATATGATGGAAAGGTGTCGACAGAA
GAGACAGAAGGGGAGATGGCAGGACCCTGGACAGAGACGCTGGCAGGATA
TTGGTTACGACGTCCGGACGGGACACCGTCCTTCGCCATGTGCTACATGC
AAGCGCTACAACGAGAGAGTGAATAGATGCTGCCTGTAGAATCCATTCAA
AAGTGAAGAGAAAGTAAAAAGAGAGTGACCGTGTATTTTTTTAATGTCAA
CAAAGCCAAGACCAGAGTCCTTTGTTCCCACCAACTCGAGCGTACATCCG
GAATTATTTCCTTTGAGAAAGCTGAAATTCAATGTAAAATTTGGGGGTTC
CGCCTTACAAA

protein sequence of rna1120

>rna1120-protein ID=rna1120-protein|Name=rna1120|organism=Nannochloropsis gaditana|type=polypeptide|length=433bp
MPVSCVLRRLGGTRRTATTTSAFSHVPFWPCIRRRPRPQTRAPPSKSWSL
FSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAA
NTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAM
AKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASL
FAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLK
FESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRA
SGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVY
EMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGI
DRMMDGDLLGEFGEALRSAEEAERLRLLLEGEI

mRNA from alignment at CM002456.1:1237058..1238474+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1120 ID=rna1120|Name=rna1120|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp|location=Sequence derived from alignment at CM002456.1:1237058..1238474+ (Nannochloropsis gaditana)
TCCTTATACATGGTTTTAATCTCAACACAGTAACCCGTCAAGTATCAGGA
CGGACAGGGACAGGCATGCCGGTCTCATGCGTCCTGAGGCGGCTCGGAGG
CACCCGGCGGACTGCCACTACCACATCCGCATTCAGCCATGTCCCATTTT
GGCCGTGCATCCGGCGTCGACCAAGGCCGCAAACAAGGGCGCCTCCATCA
AAATCATGGAGCCTCTTCTCTACCTTCACACCTGCAGTATTGACTCGACT
AGACCAGATGCGGCAACGTTATGCACAGGTCGAAAAGGAACTGAGTGCCC
TTCACACTGGTAATGACGGGGGCACCCACCAACAACATGAGCCTCATCAG
CACCACAGCGCAGCCAATACCACGCGCCTGGCTGCCTTGTCTAAAGAGCT
CTCAGAACTTTCAGATCTAGTAGAACTCACACAGGACTTGGAAAAGCACC
GGTCGAATGTACGTTTTCTGGAGGAGACGGTCAAAGGTGATCCCGACCCA
GATatggcggccatggcgaAAGAAGACGTCGGGAGTGCCAGGGACGCTGT
GACTGCGCTTGAAGAGAAGATTTTGCGGCAGCTACTCCCGAAAGAGCTTA
AGAATGACGATCGGGGCGTCATTTTGGAAGTGCGCGctgggacaggaggg
gacgaggcaTCTTTATTTGCGGGAGAGATGTTCGACATGTATGAGCGATT
CGCAGCCAGACAAAATTGGCGTTTTGAGATATTGAATGTATCCAAAAATG
AGTTTGGAGGTCTCAAAGAggcagctgctgctgtgcAGGGCCACATGGCT
TATCCTCTGCTAAAATTCGAAAGCGGGGTTCATCGCGTGCAGCGCGTACC
AGTCAATGACAGCCGTCTGCATACCTCGGCCGCAACAGTGGCAGTGCTGC
CCGAACCCCAGGATGTCGACTTCAAGTTGGACGCCCGGGACTTGAAATTT
GACGTGTATAGAGCCAGTGGCGCAGGTGGGCAGCACGTGAACACGACCGA
AAGTGCCGTTCGCGTGACGCATACGCCGACGGGCCTCGTGGTGTCCATTC
AGGACGAGCGTTCGCAGCACAAAAACAAGGATAAGGCAATTAAGATATTG
CGCGCACGAGTGTACGAGATGGAACAAGCACGGGTCATGGCCGCGCAGGC
TTCGGCGCGCAAGTCCCAAGTGGGCTCAGGGGACCGATCGGAAAGAATTC
GAACGTACAATTTCTCGCAGGACCGGGTGACTGACCACCGGATTAGCCTG
AGCAAACATGGCATCGATAGAATGATGGATGGTGATCTCCTGGGGGAGTT
TGGTGAGGCATTGAGGagtgcggaggaggcggagcggctTCGACTGTTGC
TTGAGGGGGAGATTTAGATAACCGGGAACGGATACAGAAAAGCAATAGAT
GTGACAATTTTTTACAT

Coding sequence (CDS) from alignment at CM002456.1:1237058..1238474+

>rna1120 ID=rna1120|Name=rna1120|organism=Nannochloropsis gaditana|type=CDS|length=1302bp|location=Sequence derived from alignment at CM002456.1:1237058..1238474+ (Nannochloropsis gaditana)
ATGCCGGTCTCATGCGTCCTGAGGCGGCTCGGAGGCACCCGGCGGACTGC
CACTACCACATCCGCATTCAGCCATGTCCCATTTTGGCCGTGCATCCGGC
GTCGACCAAGGCCGCAAACAAGGGCGCCTCCATCAAAATCATGGAGCCTC
TTCTCTACCTTCACACCTGCAGTATTGACTCGACTAGACCAGATGCGGCA
ACGTTATGCACAGGTCGAAAAGGAACTGAGTGCCCTTCACACTGGTAATG
ACGGGGGCACCCACCAACAACATGAGCCTCATCAGCACCACAGCGCAGCC
AATACCACGCGCCTGGCTGCCTTGTCTAAAGAGCTCTCAGAACTTTCAGA
TCTAGTAGAACTCACACAGGACTTGGAAAAGCACCGGTCGAATGTACGTT
TTCTGGAGGAGACGGTCAAAGGTGATCCCGACCCAGATatggcggccatg
gcgaAAGAAGACGTCGGGAGTGCCAGGGACGCTGTGACTGCGCTTGAAGA
GAAGATTTTGCGGCAGCTACTCCCGAAAGAGCTTAAGAATGACGATCGGG
GCGTCATTTTGGAAGTGCGCGctgggacaggaggggacgaggcaTCTTTA
TTTGCGGGAGAGATGTTCGACATGTATGAGCGATTCGCAGCCAGACAAAA
TTGGCGTTTTGAGATATTGAATGTATCCAAAAATGAGTTTGGAGGTCTCA
AAGAggcagctgctgctgtgcAGGGCCACATGGCTTATCCTCTGCTAAAA
TTCGAAAGCGGGGTTCATCGCGTGCAGCGCGTACCAGTCAATGACAGCCG
TCTGCATACCTCGGCCGCAACAGTGGCAGTGCTGCCCGAACCCCAGGATG
TCGACTTCAAGTTGGACGCCCGGGACTTGAAATTTGACGTGTATAGAGCC
AGTGGCGCAGGTGGGCAGCACGTGAACACGACCGAAAGTGCCGTTCGCGT
GACGCATACGCCGACGGGCCTCGTGGTGTCCATTCAGGACGAGCGTTCGC
AGCACAAAAACAAGGATAAGGCAATTAAGATATTGCGCGCACGAGTGTAC
GAGATGGAACAAGCACGGGTCATGGCCGCGCAGGCTTCGGCGCGCAAGTC
CCAAGTGGGCTCAGGGGACCGATCGGAAAGAATTCGAACGTACAATTTCT
CGCAGGACCGGGTGACTGACCACCGGATTAGCCTGAGCAAACATGGCATC
GATAGAATGATGGATGGTGATCTCCTGGGGGAGTTTGGTGAGGCATTGAG
GagtgcggaggaggcggagcggctTCGACTGTTGCTTGAGGGGGAGATTT
AG

Synonyms

Publications