EWM29586.1, cds1119 (CDS) Nannochloropsis gaditana

Overview
NameEWM29586.1
Unique Namecds1119
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1237123..1238424 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29586.1
Productpeptide chain release factor 1
Orig transcript idgnl|cribi|Naga_100006g47.8675.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1237123..1238424 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003747translation release factor activity
GO:0016149translation release factor activity, codon specific
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006415translational termination
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRNA-bd_dom
IPR000352Pep_chain_release_fac_I_II
IPR005139PCRF
Homology
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|585112157|gb|EWM29586.1| (peptide chain release factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 892.493 bits (2305), Expect = 0.000e+0
Identity = 433/433 (100.00%), Postives = 433/433 (100.00%), Query Frame = 0
Query:    1 MPVSCVLRRLGGTRRTATTTSAFSHVPFWPCIRRRPRPQTRAPPSKSWSLFSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEGEI 433
            MPVSCVLRRLGGTRRTATTTSAFSHVPFWPCIRRRPRPQTRAPPSKSWSLFSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEGEI
Sbjct:    1 MPVSCVLRRLGGTRRTATTTSAFSHVPFWPCIRRRPRPQTRAPPSKSWSLFSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEGEI 433          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|999846673|gb|AMK98482.1| (mitochondrial peptide chain release factor 1 [Monodopsis sp. MarTras21])

HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0
Identity = 272/393 (69.21%), Postives = 319/393 (81.17%), Query Frame = 0
Query:   40 TRAPPSKSWSLFSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEGE 432
             R P   S    STFT AVL RL+ M+ R+A+VE EL+ +H+     +   H            RLA LSKEL+ LS++V L +DLE  R+ V FLE+T+  DPDP+MAAMAK+++ SAR+AV  +E  +L++LLPK+   +DRG+ILEVRAGTGGDEASLFA E+F MYE+FA+   WRFEILN S+NEFGG+KEAAAAVQGH AY  +K+ESGVHRVQRVPVNDSRLHTSAATVAVLPEP +VDFKL+ RDLKFDV+RASGAGGQHVNTTESAVRVTH PTG VVSIQDERSQHKNKDKAIKILRARVYE EQARVMA QAS RKSQVGSGDRSERIRTYNF+QDRVTDHRISL+KHGIDRMM+G++L EF  A++ AEEAE+L+ LLEG+
Sbjct:   73 CRMPTYMSHCKMSTFTQAVLNRLETMKARHAEVETELNEMHSTTSSTSVPPH------------RLAQLSKELATLSEMVALIEDLEAKRAEVGFLEKTLD-DPDPEMAAMAKDELESAREAVVEMERVVLKRLLPKDEGEEDRGLILEVRAGTGGDEASLFANEIFAMYEKFASANRWRFEILNSSRNEFGGIKEAAAAVQGHEAYIKMKYESGVHRVQRVPVNDSRLHTSAATVAVLPEPHEVDFKLEQRDLKFDVFRASGAGGQHVNTTESAVRVTHIPTGTVVSIQDERSQHKNKDKAIKILRARVYEREQARVMAEQASERKSQVGSGDRSERIRTYNFAQDRVTDHRISLTKHGIDRMMEGEMLEEFALAMKEAEEAEKLKQLLEGD 452          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|999846665|gb|AMK98478.1| (mitochondrial peptide chain release factor 1 [Vischeria sp. CAUP Q 202])

HSP 1 Score: 491.5 bits (1264), Expect = 1.675e-169
Identity = 248/385 (64.42%), Postives = 301/385 (78.18%), Query Frame = 0
Query:   47 SWSLFSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEG 431
            S+ L S FTP++  RL  M+ R+ ++EKEL+A+H G  G   Q              +LA+L+KELS+LS++VEL   L K RS++ FLE T+  DPDP+MAAMAKE+V  AR+ V++LE  ILR LLP++   DDR +ILEVRAGTGGDEA LF  E+F MYER+AA   WRF+IL   K + GGL+EA A+V G  AY  LK+ESGVHRVQRVPVND R+HTSA TVAVLPEPQDVD ++D +DLK DVYRASGAGGQHVNTTESAVRVTH PTG+VV+IQDERSQHKNKDKA+KILRARVYE E+ R+MA QAS RK QVGSGDRSERIRTYNF+QDR+TDHR+SLSKHG++RM++G+LL +F  ALR  EE E+L+ LLEG
Sbjct:   65 SFRLMSGFTPSLEKRLQLMKARHGELEKELAAMHEGGSGNRMQPQ------------KLASLNKELSDLSEVVELMAHLNKQRSDLAFLEITLN-DPDPEMAAMAKEEVERAREGVSSLEGAILRLLLPRD-DGDDRNLILEVRAGTGGDEAGLFTAEVFTMYERYAALNRWRFDILTYQKGDIGGLREATASVSGSEAYQKLKYESGVHRVQRVPVNDVRIHTSAMTVAVLPEPQDVDLRIDNKDLKIDVYRASGAGGQHVNTTESAVRVTHIPTGVVVAIQDERSQHKNKDKALKILRARVYEKERERIMAQQASDRKLQVGSGDRSERIRTYNFAQDRITDHRVSLSKHGMERMLNGELLEDFSAALRGKEETEKLQQLLEG 435          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|999846661|gb|AMK98476.1| (mitochondrial peptide chain release factor 1 [Trachydiscus minutus])

HSP 1 Score: 457.988 bits (1177), Expect = 1.055e-156
Identity = 227/381 (59.58%), Postives = 297/381 (77.95%), Query Frame = 0
Query:   51 FSTFTPAVLTRLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDSRLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLEG 431
             +TF+PA++ RL  ++ RY ++E EL+ALH G+     +Q  P Q         LA L++E SELS+LV+L   LE+ +   + L+   K DPDP++A MAKE++G  ++ + +L  ++LR LLP++ +  DRGV+LEVRAGTGGDEA+LF  E+F MY+++A+ + WRFE+L  SK++ GG KEA+AA+QG   Y  LK ESGVHRVQRVPVND+RLHTSAATVAVLPEP++VD +LD RDLK+DV+RASGAGGQHVNTTESAVRVTH PTG+VV+IQDERSQHKNKDKA+KILRAR++E EQ RV   QAS R  QVGSGDRSERIRTYN++QDRVTDHR++L+K+GI+RM+ G+++ E+  AL  AEE E+L+ LLEG
Sbjct:   43 LATFSPAIVNRLAMVQTRYNELEAELNALHVGSG----KQPTPQQ---------LAKLNREHSELSELVQLLHQLEEKQKEEKDLQSLSK-DPDPEIANMAKEELGKVQEGLESLHAEVLRCLLPRD-EGGDRGVVLEVRAGTGGDEAALFTAEIFIMYQKYASLRGWRFEVLTESKSDLGGYKEASAAIQGDQVYQRLKHESGVHRVQRVPVNDTRLHTSAATVAVLPEPEEVDLRLDPRDLKYDVFRASGAGGQHVNTTESAVRVTHIPTGIVVAIQDERSQHKNKDKALKILRARIFEKEQERVRQEQASERSRQVGSGDRSERIRTYNYAQDRVTDHRVNLTKYGIERMLSGEMVEEYTRALLQAEETEKLKQLLEG 408          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|750562538|ref|WP_040844407.1| (peptide chain release factor 1 [Nitrospirillum amazonense])

HSP 1 Score: 361.688 bits (927), Expect = 1.404e-119
Identity = 178/320 (55.62%), Postives = 243/320 (75.94%), Query Frame = 0
Query:  108 LSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDS--RLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERL 425
            +SKE +EL+ + E   DL + RSN+  L    + + DP+M  +A+E++  A  A+  LE +++  LLPK+   DD+  +LEVRAGTGGDEA+LFA  +FDMY R+AA Q WRFE++ +S+   GG KEA A++ G   +  LKFESGVHRVQRVP  ++  R+HTSAATVAVLPE ++VD ++D +DL+ DV+R+SG GGQ VNTT+SAVR+TH PTGLVVS QDE+SQHKNK KA+++LR+R+Y+++++ + A +A+ RKSQVGSGDRSERIRTYNF Q RVTDHRI+L+ + ID++M G+ L E  EAL + +EAERL
Sbjct:   39 MSKEFAELTPVAESIADLRRARSNLAELARMAEAEADPEMRELAQEELIQAEKALPGLERQVMLALLPKD-AADDKNAMLEVRAGTGGDEAALFAANLFDMYRRYAAIQGWRFEVIEISETGLGGYKEAIASISGRGVFRRLKFESGVHRVQRVPATETQGRIHTSAATVAVLPEAEEVDIQIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQHKNKAKALRVLRSRLYDLQRSALDAERAANRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDKVMAGEALDEVVEALIAQDEAERL 357          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|655018089|ref|WP_028467048.1| (peptide chain release factor 1 [Nisaea denitrificans])

HSP 1 Score: 358.607 bits (919), Expect = 1.590e-118
Identity = 180/330 (54.55%), Postives = 248/330 (75.15%), Query Frame = 0
Query:   98 SAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDS--RLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERL 425
            ++ +++ +A LSKELSEL+ + +   +L   R  +    E ++   DPDMA MA E++     A+  LE  +   LLPK+ + D++  ILEVRAGTGGDEA+LFA ++F MY+R+AA + W+FE++ +S+N+ GG KEA A + G   +  LKFESGVHRVQRVPV +S  R+HTSAATVAVLPE +DVD  ++ +DL+ DV+RASGAGGQHVNTTESAVR+TH P+G+VVS QDE+SQHKN+ KA+KILRAR+Y+ E+ R+ + +A+ RK Q+GSGDRSERIRTYNF Q RV+DHRI+L+ + ID+++ G+ L EF +AL + +EA RL
Sbjct:   22 ASGDSSDIAKLSKELSELAPIAQKVTELNDMRRELTDARELLE---DPDMADMAGEEIQRLEKALPELERDVQILLLPKD-EADEKNAILEVRAGTGGDEAALFAADLFGMYQRYAALKGWKFEVMEISENDIGGYKEATAEITGRSVFARLKFESGVHRVQRVPVTESGGRIHTSAATVAVLPEAEDVDLNIEDKDLRVDVFRASGAGGQHVNTTESAVRITHIPSGIVVSQQDEKSQHKNRAKAMKILRARLYDHERQRLASERAADRKDQIGSGDRSERIRTYNFPQGRVSDHRINLTLYKIDKVIAGEALDEFVDALTAEDEAARL 347          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|1208298634|ref|WP_088153088.1| (peptide chain release factor 1 [Inquilinus limosus] >gi|1207217486|gb|OWJ65089.1| peptide chain release factor 1 [Inquilinus limosus])

HSP 1 Score: 358.607 bits (919), Expect = 2.642e-118
Identity = 183/327 (55.96%), Postives = 243/327 (74.31%), Query Frame = 0
Query:  104 RLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDS--RLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLL 428
            +  A SKE SEL  + +    L K R+ +  LE     + DP+M A+A+E++ + RD++ ALE ++   LLPK+ + DDR  ILEVRAGTGGDEA+LFA ++F MY+R+AA + WRFE+++++    GG KEA+A + G   +  LKFESG HRVQRVP  ++  R+HTSAATVAVLPE ++VD ++D +DL+ DV+RA GAGGQHVN TESAVR+TH PTG+VV +QDE+SQHKN+ KA+KILRAR+YE E+A   A +A+ RKSQVGSGDRSERIRTYNF Q RVTDHRI+L+ + I+R+M G+ L E  EAL + +EA RL  L
Sbjct:   30 QFTAYSKEYSELEPIADEITALHKGRAELAQLEAMAAAETDPEMKALAQEELFALRDSLPALERRVQVLLLPKD-EADDRNAILEVRAGTGGDEAALFAADLFRMYQRYAAIRGWRFEVMDIADTPLGGYKEASAEISGRGVFARLKFESGAHRVQRVPETEAQGRIHTSAATVAVLPEAEEVDVQIDDKDLRVDVFRAQGAGGQHVNKTESAVRITHLPTGIVVVMQDEKSQHKNRAKAMKILRARLYEAERAAKDAVRAADRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIERVMAGEALDELVEALIAEDEAARLAAL 355          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|764998088|ref|WP_044564286.1| (peptide chain release factor 1 [Azospirillum sp. B4])

HSP 1 Score: 357.066 bits (915), Expect = 1.053e-117
Identity = 176/320 (55.00%), Postives = 243/320 (75.94%), Query Frame = 0
Query:  108 LSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDS--RLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERL 425
            +SKE +EL+ + E   DL + R+++  L    + + DP+M  +A++++  A  A+ ALE +++  LLPK+   DD+  +LEVRAGTGGDEA+LFA  +FDMY R+AA Q WRFE++++S+   GG KEA A++ G   +  LKFESGVHRVQRVP  ++  R+HTSAATVAVLPE ++VD ++D +DL+ DVYR+SG GGQ VNTT+SAVR+TH PTGLVV  QDE+SQHKNK KA+++LR+R+Y+ +++ + A +A+ RKSQVGSGDRSERIRTYNF Q RVTDHRI+L+ + ID++M G+ L E  EAL + +EAERL
Sbjct:   39 MSKEFAELTPVAESIADLRRARADLAELARMAEAESDPEMRELAQDELVQAEKAMPALERQVMLALLPKD-AADDKNAMLEVRAGTGGDEAALFAANLFDMYRRYAAIQGWRFEVMDISETGLGGYKEAIASISGRGVFRRLKFESGVHRVQRVPATETQGRIHTSAATVAVLPEAEEVDIQIDDKDLRIDVYRSSGPGGQSVNTTDSAVRITHLPTGLVVIQQDEKSQHKNKAKALRVLRSRLYDQQRSALDAERAANRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDKVMAGEALDEVVEALIAQDEAERL 357          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|568207521|ref|WP_024081885.1| (peptide chain release factor 1 [Magnetospirillum gryphiswaldense] >gi|144897745|emb|CAM74609.1| peptide chain release factor RF-1 [Magnetospirillum gryphiswaldense MSR-1] >gi|566557735|emb|CDL00960.1| peptide chain release factor 1 [Magnetospirillum gryphiswaldense MSR-1 v2])

HSP 1 Score: 356.681 bits (914), Expect = 1.080e-117
Identity = 188/372 (50.54%), Postives = 261/372 (70.16%), Query Frame = 0
Query:   61 RLDQMRQRYAQVEKELSALHTGNDGGTHQQHEPHQHHSAANTTRLAALSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDS--RLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERLRLLLE 430
            +LD++  RY ++ ++L+A     DGG+                  A LSKE S++  +V   Q L+K R+++   E  +    DPDM  +A E+  + ++ +  LE  +   LLPK+ + D++  ILEVRAGTGG+EA+LFA E+F MYER+A+ + WRFE+++V++   GG+KEA+A + G   +  LKFESGVHRVQRVP  +S  R+HTSAATVA++PE ++VD ++D +DL+FDVYR+ G+GGQ VNTT+SAVRVTH PTGL V+ Q E+SQHKNK  A+K+LRAR+YEME+A   A +A+ RKSQVGSGDRSERIRTYNF Q RVTDHRI+L+ + ID MM+G  L E  +AL +A++AERL  + E
Sbjct:    6 QLDKVLYRYDELREQLAA----GDGGS-----------------FARLSKEFSDIEPVVHAVQALKKARADMAEAEAMM---ADPDMKDLAAEEYYALKETLPGLERDVQLMLLPKD-EADEKNAILEVRAGTGGEEAALFAAELFRMYERYASVRGWRFEVMDVNETGIGGMKEASATITGRGVFARLKFESGVHRVQRVPATESGGRIHTSAATVAIMPEAEEVDIQIDDKDLRFDVYRSQGSGGQSVNTTDSAVRVTHIPTGLAVACQQEKSQHKNKATAMKLLRARLYEMERASKAAERAANRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDDMMNGTALDEVADALIAADQAERLAEMAE 352          
BLAST of EWM29586.1 vs. NCBI_GenBank
Match: gi|1214759394|ref|WP_088870634.1| (peptide chain release factor 1 [Nitrospirillum amazonense] >gi|1213413211|gb|ASG19650.1| peptide chain release factor 1 [Nitrospirillum amazonense CBAmc])

HSP 1 Score: 353.599 bits (906), Expect = 2.782e-116
Identity = 175/320 (54.69%), Postives = 241/320 (75.31%), Query Frame = 0
Query:  108 LSKELSELSDLVELTQDLEKHRSNVRFLEETVKGDPDPDMAAMAKEDVGSARDAVTALEEKILRQLLPKELKNDDRGVILEVRAGTGGDEASLFAGEMFDMYERFAARQNWRFEILNVSKNEFGGLKEAAAAVQGHMAYPLLKFESGVHRVQRVPVNDS--RLHTSAATVAVLPEPQDVDFKLDARDLKFDVYRASGAGGQHVNTTESAVRVTHTPTGLVVSIQDERSQHKNKDKAIKILRARVYEMEQARVMAAQASARKSQVGSGDRSERIRTYNFSQDRVTDHRISLSKHGIDRMMDGDLLGEFGEALRSAEEAERL 425
            +SKE +EL+ + E    L   RS++  L    + + DP+M  +A++++  A  A+  LE +++  LLPK+   DD+  +LEVRAGTGGDEA+LFA  +FDMY R+AA Q WRFE++ +S+   GG KEA A++ G   +  LKFESGVHRVQRVP  ++  R+HTSAATVAVLPE ++VD ++D +DL+ DV+R+SG GGQ VNTT+SAVR+TH PTGLVVS QDE+SQHKNK KA+++LR+R+Y+++++ + A +A+ RKSQVGSGDRSERIRTYNF Q RVTDHRI+L+ + ID++M G+ L E  EAL + +EAERL
Sbjct:   40 MSKEFAELTPVAESIAALRHARSDLAELARMAEAEADPEMRELAQDELIQAEKALPGLERQVMLALLPKD-AADDKNAMLEVRAGTGGDEAALFAANLFDMYRRYAAIQGWRFEVIEISETGLGGYKEAIASISGRGVFRRLKFESGVHRVQRVPATETQGRIHTSAATVAVLPEAEEVDIQIDEKDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGLVVSQQDEKSQHKNKAKALRVLRSRLYDLQRSALDAERAANRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDKVMAGEALDEVVEALIAQDEAERL 358          
The following BLAST results are available for this feature:
BLAST of EWM29586.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112157|gb|EWM29586.1|0.000e+0100.00peptide chain release factor 1 [Nannochloropsis ga... [more]
gi|999846673|gb|AMK98482.1|0.000e+069.21mitochondrial peptide chain release factor 1 [Mono... [more]
gi|999846665|gb|AMK98478.1|1.675e-16964.42mitochondrial peptide chain release factor 1 [Visc... [more]
gi|999846661|gb|AMK98476.1|1.055e-15659.58mitochondrial peptide chain release factor 1 [Trac... [more]
gi|750562538|ref|WP_040844407.1|1.404e-11955.63peptide chain release factor 1 [Nitrospirillum ama... [more]
gi|655018089|ref|WP_028467048.1|1.590e-11854.55peptide chain release factor 1 [Nisaea denitrifica... [more]
gi|1208298634|ref|WP_088153088.1|2.642e-11855.96peptide chain release factor 1 [Inquilinus limosus... [more]
gi|764998088|ref|WP_044564286.1|1.053e-11755.00peptide chain release factor 1 [Azospirillum sp. B... [more]
gi|568207521|ref|WP_024081885.1|1.080e-11750.54peptide chain release factor 1 [Magnetospirillum g... [more]
gi|1214759394|ref|WP_088870634.1|2.782e-11654.69peptide chain release factor 1 [Nitrospirillum ama... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1120rna1120Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications