rna112, rna112 (mRNA) Nannochloropsis gaditana

Overview
Namerna112
Unique Namerna112
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1533
Alignment locationCM002455.1:298958..300053 +

Link to JBrowse

Properties
Property NameValue
Productputative fkbp-type peptidyl-prolyl cis-trans isomerase chloroplastic-like protein
Orig transcript idgnl|cribi|Naga_100033g36.8386.mrna
Orig protein idgnl|cribi|Naga_100033g36.8386
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:298958..300053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g36gene109Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna112rna112-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30547.1cds112Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna112 ID=rna112|Name=rna112|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp
GGGTCAAATTTTCTTCGGCGTGCGTACTTGTTTCCTGAGCCAACTAACAC
ACAACAATTCTTCCGTGCCCAAGGAAAAAGGTCTTTTGTGCCCTCCATAA
CTTCGTCACCACGACGCCTGTGTCAACCGTTTTTTTTTGCCAGCGGCGTC
TCCCACTTTTCTTCATCTTCCTCTTAGCGCTCAGTATCCTTGTACCCGGG
GCTACATTCTTCTCCCCTCAAGTACAGCTGCGAATGTCAGAAGCACCCAC
CCGTCAAGCTCCCAGCAGTAGCACTGCCAGTAGTACGAATGCCAGCCCGC
CGCATCCACAGCATGCCAAGCCAGGACCTCTACGTCCCGCCGGGGGGGCG
AAGAGCGGCGAAGGGGAAAAGAAATTTACCGTAGGGTTTATTGGCGGCGG
AATGATGGCGTCGGCATTGATTAGAGGACTTGTCAAGGCGGGAGTCGTTC
CCAACTTCGCCATCTCTGTGAGCGACCCCTACAAGCCCATGCGGGACAAG
CTTGCTGCGGAAGTCGGAGTAATCGCCTACGACGACAACATCCAAGTTAT
CGAGCACGCGCAAGTGATCGTCCTCGCTGTGAAGCCGGACATCATTCCCC
AAGTCCTGCGAGAGCTTTCGCAGCGAGTGACCCGCCACCACCTCATTATC
TCCATTGCTGCGGGGGCTACTCTGCAGCTTATGGAGCACCAACTCCCCGA
CCAGACTCGGGTGGTGCGAGTGATGCCCAACACTCCCTGCCTGGTGGGGG
AGTGCGCCGCCGCATTCGCCTTGGGCGGCTCCTGCCTGCCGGAGGACGCT
GTGCTCGTAAAACGCATTTTTTCGGCCGTGGGTGCAGCCTTCGAAGTAAA
AGAGAAGGATTTGAACGCTGTGACAGGACTGAGCGGGAGTGGGCCGGCCT
ACGTGTTCATGATGATCGAGGCCATGGCCGATGGCGGCGTGCGGGCCGGT
CTTCCCCGCAATGTGGCTATGCAACTCGCCGCACAGACGGTCAAGGGCGC
GGCCACCATGGTCCAGCTTACTGGAGAGCATCCAGGAGTGCTTAAGGATC
AAGTGGCCAGCCCGGGAGGTACCACCATCACGGGGATCGAGGCCTTGGAG
AAAGGGGGTTTGCGATCCACGGTTATCGGGGCGGTGGTGGCCGCAGCGGA
GCGATCCAAACAACTGGCAGAGTCGTCGAAGCCGACGCCCAACCCGCGGC
AAACATAAGTACGGGAAGCTGTTGAAGGGCAAGGGCAACATTAAAGTCTC
GGAAATGCTGACATAAATTGAGAGAGGAAAAGAGCAGTTCAAGGGAGATG
GCAACGATTAGAGAGGAGACAAATCATTCAATTGTTAAACGAAATCAAGC
TCTTATTGCAGAAAAGAAGTGATTTGTGTTCTTAGTTTTTGTTTGGCATT
AATTTCTCCTTGCAGACTCAGTCAGTGGATAACAAGCAACATGAGACGGA
TGCCTTCTAACGCCACGTTTGCTGCCTTGTTGTCTCTGGTAAGATAACCT
TGCATCCCGAGCCACATAGCTTATGACAATGAA
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protein sequence of rna112

>rna112-protein ID=rna112-protein|Name=rna112|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MKVMISGWTLLFLPCASSFLAPSTLAITNKKDAIVLNEKGSPTVLEAEGG
MSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGN
GPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAV
KVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPG
RETEVIDLDSFDENAPASDDSDPNKGLRF
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mRNA from alignment at CM002455.1:298958..300053+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna112 ID=rna112|Name=rna112|organism=Nannochloropsis gaditana|type=mRNA|length=1096bp|location=Sequence derived from alignment at CM002455.1:298958..300053+ (Nannochloropsis gaditana)
CTCATTCGGTCGATGACCGGGTGGCAGTCGTGTGCTACACAGATGCTCAT
TTTCTCCTCATAACTTCATTGCCAGGATCCCTCTTACCGCTGCCTAGTCA
CGATGAAGGTTATGATCTCGGGCTGgactcttctcttcctgccctgtgct
tcctccttcctcgccccctcgaCGCTTGCAATCACGAACAAAAAGGATGC
CATAGTGCTAAATGAGAAAGGTAGCCCGACTGTGTTGGAGGCTGAGGGTG
GCATGTCGAGAAGAGACGCGTTGTTCAAGACAGCGGGTCTGCTCTCTCTC
GGACTAGCAATGGGTAGCTCGAGGGGGCTCATCTCGCTGCCACGAGCAGG
TGCAGAGACACTTCCCGGTGGCATCACGTACGAGGTATTGGAAAAAGGTA
ATGGCCCCATACCCCAAGTGGGCGAATTGGCTGCTATTCGCTTTACAGGC
GCCTACAAGGACAACGTGTTCGACGACTTATACAAGACCAAAGAACCTTT
ATACTTCCGCGTGGGCGGCAACACACTCCTGAAAGGTATCGAAGAGGCCG
TCAAGGTGATGAAAGTGGGTGACCGCTGGAAACTTACAATCCCGGGTGAG
CTTGCCTTCGGCGCCAAGGGTCGCTCAGCTTCCCCCGGTAAGCCTCGCAT
TCCCCCCATGGCACCGGTCGAGTACGACCTGACCCTCGTGGCGCTGCCTG
GAAGGGAAACAGAGGTCATAGACCTGGACAGTTTCGATGAAAACGCGCCA
GCATCGGACGATTCGGATCCGAACAAAGGGTTGCGCTTTTAATTGGGAGG
GGATCCTTGGTCTTACGTGCGCGAGCGGAAAACGTGCGTGTCCTTTCAAA
GGGCGAGCGAAGGGCTTAcatgcggagggaggcacagCTTGTAAGTTACC
TTGAAAAGGATTTTGCCCCCCTCGGCAGCTGTCATAGTTTCGCTCGTTTC
GTGTGGCGTTGGAAGAATATTTTTCGGCAGCTGTCATAGTTTCGCTCGTT
TCGTGTGGCGTTGGAAGAATATTTTTCCGTACGACCTACCCAAAGCCATT
GCTCGGTATTAAAACCCAAAAAAATAACCTCAATGCCTTCCAACGT
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Coding sequence (CDS) from alignment at CM002455.1:298958..300053+

>rna112 ID=rna112|Name=rna112|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002455.1:298958..300053+ (Nannochloropsis gaditana)
ATGAAGGTTATGATCTCGGGCTGgactcttctcttcctgccctgtgcttc
ctccttcctcgccccctcgaCGCTTGCAATCACGAACAAAAAGGATGCCA
TAGTGCTAAATGAGAAAGGTAGCCCGACTGTGTTGGAGGCTGAGGGTGGC
ATGTCGAGAAGAGACGCGTTGTTCAAGACAGCGGGTCTGCTCTCTCTCGG
ACTAGCAATGGGTAGCTCGAGGGGGCTCATCTCGCTGCCACGAGCAGGTG
CAGAGACACTTCCCGGTGGCATCACGTACGAGGTATTGGAAAAAGGTAAT
GGCCCCATACCCCAAGTGGGCGAATTGGCTGCTATTCGCTTTACAGGCGC
CTACAAGGACAACGTGTTCGACGACTTATACAAGACCAAAGAACCTTTAT
ACTTCCGCGTGGGCGGCAACACACTCCTGAAAGGTATCGAAGAGGCCGTC
AAGGTGATGAAAGTGGGTGACCGCTGGAAACTTACAATCCCGGGTGAGCT
TGCCTTCGGCGCCAAGGGTCGCTCAGCTTCCCCCGGTAAGCCTCGCATTC
CCCCCATGGCACCGGTCGAGTACGACCTGACCCTCGTGGCGCTGCCTGGA
AGGGAAACAGAGGTCATAGACCTGGACAGTTTCGATGAAAACGCGCCAGC
ATCGGACGATTCGGATCCGAACAAAGGGTTGCGCTTTTAA
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Synonyms
Publications