EWM30547.1, cds112 (CDS) Nannochloropsis gaditana

Overview
NameEWM30547.1
Unique Namecds112
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:299060..299749 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30547.1
Productputative fkbp-type peptidyl-prolyl cis-trans isomerase chloroplastic-like protein
Orig transcript idgnl|cribi|Naga_100033g36.8386.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:299060..299749 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|585113214|gb|EWM30547.1| (putative fkbp-type peptidyl-prolyl cis-trans isomerase chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 457.218 bits (1175), Expect = 1.360e-162
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0
Query:    1 MKVMISGWTLLFLPCASSFLAPSTLAITNKKDAIVLNEKGSPTVLEAEGGMSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDLDSFDENAPASDDSDPNKGLRF 229
            MKVMISGWTLLFLPCASSFLAPSTLAITNKKDAIVLNEKGSPTVLEAEGGMSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDLDSFDENAPASDDSDPNKGLRF
Sbjct:    1 MKVMISGWTLLFLPCASSFLAPSTLAITNKKDAIVLNEKGSPTVLEAEGGMSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDLDSFDENAPASDDSDPNKGLRF 229          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|1210530012|dbj|GAX11545.1| (peptidylprolyl isomerase [Fistulifera solaris])

HSP 1 Score: 151.369 bits (381), Expect = 1.377e-42
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 0
Query:   84 AETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL 208
            AETLP G+TYEV +KG+GP P++GELAAIRF      N  DD++ T EP Y R+G   LLKG+EE + +M++GDRW+LTIP ELAFG KGR AS GKPRI   A + +D+ +V LPGRE E+I+L
Sbjct:   51 AETLPNGVTYEVKKKGDGPQPEIGELAAIRFAAYNGANKIDDIFDTPEPYYTRIGSGGLLKGVEETLPLMRLGDRWELTIPSELAFGKKGRPASAGKPRIAGDAVITFDVEMVGLPGREIELIEL 175          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|1210528428|dbj|GAX12950.1| (peptidylprolyl isomerase [Fistulifera solaris])

HSP 1 Score: 150.599 bits (379), Expect = 2.770e-42
Identity = 72/124 (58.06%), Postives = 93/124 (75.00%), Query Frame = 0
Query:   85 ETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL 208
            ETLP G+TYEV +KG+GP P++GELAAIRF      N  DD+++T EP Y R+G   LLKG+EE + +M++GDRW+LTIP ELAFG KGR AS GKPRI   A + +D+ +V LPGRE E+I+L
Sbjct:   50 ETLPNGVTYEVKKKGDGPQPEIGELAAIRFAAYNGANKIDDIFETPEPYYTRIGSGGLLKGVEETLPLMRLGDRWELTIPSELAFGKKGRPASAGKPRIAGDAVITFDVEMVGLPGREIELIEL 173          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|873240272|emb|CEL93612.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 140.969 bits (354), Expect = 9.480e-39
Identity = 67/130 (51.54%), Postives = 92/130 (70.77%), Query Frame = 0
Query:   90 GITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDLDSFDENAPASD 219
            G+ Y VL+ G GP  + G+L  IRF G YK+ V DDL++T EP Y R  G  L+ G+EEA+ +M+VGDRWKL +PG LAFG +GRS +PG+PRIPP AP+EY++ +V +PG+  + +DL   D + P SD
Sbjct:   33 GLAYSVLKSGEGPKVEAGDLVVIRFRGQYKNIVIDDLFRTSEPYYARAAGGKLVAGLEEALLMMRVGDRWKLKVPGALAFGQQGRSPAPGRPRIPPNAPIEYEMLVVDIPGK-GDPLDLYFGDTDQPDSD 161          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|397571691|gb|EJK47918.1| (hypothetical protein THAOC_33332 [Thalassiosira oceanica])

HSP 1 Score: 141.354 bits (355), Expect = 1.470e-38
Identity = 80/203 (39.41%), Postives = 116/203 (57.14%), Query Frame = 0
Query:    9 TLLFLPC---ASSFLAPSTLAITNKKDAIVLNEKGSPTVLEAEGGMSRRDALFKTAGLLSLGLAMGSSRGLISLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL 208
             +L L C   +++F+APS  A+               T L A+   SR + L      +   + + +  G+   P    E LP G++ +V + GNGP P++GE+AAIRF     +N  DD+++T EP Y R+G   L+KG+EE +  M VGDRW LT+PG LAFG  GR AS GKPRIP    + +D+ +V LPG+E E+ID+
Sbjct:    4 CMLLLSCVAPSAAFVAPSGPAVN--------------TALAAQ--QSRTEFLRDVTATVGASVVVSTLGGM---PAYADEVLPSGVSIKVEKSGNGPAPEIGEMAAIRFRAFAGENKIDDIFETPEPYYTRIGSGGLIKGVEEVLPKMVVGDRWVLTVPGPLAFGPAGRKASAGKPRIPGNQEIIFDVEMVGLPGKEQELIDI 187          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|224001234|ref|XP_002290289.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973711|gb|EED92041.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 137.887 bits (346), Expect = 4.584e-38
Identity = 67/119 (56.30%), Postives = 86/119 (72.27%), Query Frame = 0
Query:   90 GITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL 208
            G+  +V++ GNGP P +GELAAIRF     +N  DD++ T EP Y RVG   L+KG+EE +  M+VGDRW LTIPGELAFG KGR AS GKPRIP  A + +D+ +V LPG+E E+I+L
Sbjct:    1 GVAIKVVKSGNGPEPGIGELAAIRFQSFAGENKIDDIFDTPEPYYTRVGSGGLIKGVEEVLPKMRVGDRWVLTIPGELAFGPKGRPASAGKPRIPSNAVITFDVEMVGLPGKEPELIEL 119          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|676380147|ref|XP_009033352.1| (hypothetical protein AURANDRAFT_17047, partial [Aureococcus anophagefferens] >gi|323456422|gb|EGB12289.1| hypothetical protein AURANDRAFT_17047, partial [Aureococcus anophagefferens])

HSP 1 Score: 136.346 bits (342), Expect = 1.389e-37
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 0
Query:   90 GITYEVLEKG-NGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEV 205
            G+ YEV++   NG IP++G+L AIRF G+ +  VFDD+ KT EPLY+RVGG +L+KGI+EAV +M  G+ W LTIPG+L FG KGRSAS GKPRIPP A + Y++  V  PG E ++
Sbjct:    1 GLKYEVIKSNPNGAIPKIGDLIAIRFKGSTEGRVFDDITKTDEPLYYRVGGGSLIKGIDEAVTLMHYGETWGLTIPGDLGFGPKGRSASAGKPRIPPNAELYYEVQFVGFPGFEGDL 117          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|298707952|emb|CBJ30323.1| (putative FKBP-type peptidyl-prolyl cis-trans isomerase 2 [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 3.754e-37
Identity = 77/178 (43.26%), Postives = 109/178 (61.24%), Query Frame = 0
Query:   44 VLEAEGGMSR-RDALFKTAGLLSLGLAMGSSRGLI--SLPRAGAETLPGGITYEVLEKGNGPIPQVGELAAIRFTGAYKDNVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL---DSFDENA 215
             L  EGG  + R  L +T  +    L  G+++ L+  S+    + T   G+    L +G GP+ + G+L  +RF G Y    FD+++ T EP Y R G  TL+KG+EEA+ +M+VGD+W+LT P  LAFG KGR  SPG+PRIPP A VEY L LVALPG+E ++++    D+F  NA
Sbjct:   48 ALSPEGGQGQSRGELLQT--VWKTALTAGAAQTLLASSVLAEDSLTTASGLKINKLVQGKGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPRIPPGADVEYTLELVALPGKEEDIVEQRTGDTFSGNA 223          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|551558614|ref|XP_005766282.1| (hypothetical protein EMIHUDRAFT_48468, partial [Emiliania huxleyi CCMP1516] >gi|485616523|gb|EOD13853.1| hypothetical protein EMIHUDRAFT_48468, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 134.035 bits (336), Expect = 1.263e-36
Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 0
Query:   90 GITYEVLEKGNGPIPQVGELAAIRFTGAYKDN--VFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL 208
            G+TY V++ G G  P  G+L AIRF G  K +  VFDD+ ++ E  YFRVG  ++L G+EEAVK+M  GD W LTIPG+LAFG KGRSASPGKPRIP  A + + L LVA+PG++ E++++
Sbjct:    1 GLTYNVIKSGKGGQPATGDLIAIRFKGTIKSSGQVFDDIMESAEAYYFRVGSGSVLPGVEEAVKLMHTGDVWDLTIPGKLAFGDKGRSASPGKPRIPSNAEIGFLLELVAVPGKDDELLEV 121          
BLAST of EWM30547.1 vs. NCBI_GenBank
Match: gi|219118801|ref|XP_002180167.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408424|gb|EEC48358.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 133.265 bits (334), Expect = 2.692e-36
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 0
Query:   90 GITYEVLEKGNGPIPQVGELAAIRFTGAYKD--NVFDDLYKTKEPLYFRVGGNTLLKGIEEAVKVMKVGDRWKLTIPGELAFGAKGRSASPGKPRIPPMAPVEYDLTLVALPGRETEVIDL 208
            G++Y V ++GNGP  +VGEL AIRF     D  N  DD++ T EP Y RVG   L+KG+EE + +M++GDRW LTIPG++AFG KGR +S GKPRIP  A + +DL +V LPG+E E+I+L
Sbjct:    1 GVSYVVKKQGNGPQAEVGELVAIRFAAYVNDGQNKLDDIFDTPEPYYTRVGSGGLVKGVEEVLPMMRLGDRWVLTIPGDMAFGKKGRPSSAGKPRIPGDAVITFDLEMVGLPGKEQELIEL 121          
The following BLAST results are available for this feature:
BLAST of EWM30547.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113214|gb|EWM30547.1|1.360e-162100.00putative fkbp-type peptidyl-prolyl cis-trans isome... [more]
gi|1210530012|dbj|GAX11545.1|1.377e-4258.40peptidylprolyl isomerase [Fistulifera solaris][more]
gi|1210528428|dbj|GAX12950.1|2.770e-4258.06peptidylprolyl isomerase [Fistulifera solaris][more]
gi|873240272|emb|CEL93612.1|9.480e-3951.54unnamed protein product [Vitrella brassicaformis C... [more]
gi|397571691|gb|EJK47918.1|1.470e-3839.41hypothetical protein THAOC_33332 [Thalassiosira oc... [more]
gi|224001234|ref|XP_002290289.1|4.584e-3856.30predicted protein, partial [Thalassiosira pseudona... [more]
gi|676380147|ref|XP_009033352.1|1.389e-3756.41hypothetical protein AURANDRAFT_17047, partial [Au... [more]
gi|298707952|emb|CBJ30323.1|3.754e-3743.26putative FKBP-type peptidyl-prolyl cis-trans isome... [more]
gi|551558614|ref|XP_005766282.1|1.263e-3654.55hypothetical protein EMIHUDRAFT_48468, partial [Em... [more]
gi|219118801|ref|XP_002180167.1|2.692e-3653.72predicted protein, partial [Phaeodactylum tricornu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna112rna112Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications