rna1117, rna1117 (mRNA) Nannochloropsis gaditana

Overview
Namerna1117
Unique Namerna1117
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1209
Alignment locationCM002456.1:1223714..1225514 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g50.8685.mrna
Orig protein idgnl|cribi|Naga_100006g50.8685
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1223714..1225514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g50gene1076Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1117rna1117-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29596.1cds1116Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1117 ID=rna1117|Name=rna1117|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
AGAAGACCTTCGTTAAGTACTACTAATCGTTACCGGGGAAATCGCTTGAC
AGACAAAAGAAAAGCCGCCACCGGTTGCTGTCACGCGTCGAACGTGCTGC
CACCAGACACTTTAGTGTCGCGTAGCGTACGGGAGTAGTCTGAGGGGTCA
ATCGTCGACACAAGGGGAATAAGAAAAGAGGACATCGTTCGGGACGTGAT
CTCTCGGAGAGTACTCACAAACCTTTTCCCCCTTCATCTACAGGGCTCTC
TAAAGCATGGCAAAATCGACTTCGGCAACCAGCACGTGGTCGCAGGCTCT
GCCTCCACAGTACGCATTGCTTCTGGGAAATTTGTTGGTACTTGCGAACT
TTATCGCTGCCCTCCTTGTACCCTGGGTCGAGGCACGATACAAGGTATTT
GATGCATGGTTCCCTGTATACATGCCAGTGAAAATTGGCCTCCTTAAATG
TTTTGGTGACATGTGTTCAGCATTATACGGTGAGACGGGTCAACAACAAA
AGGGTCAGGGCAAAGGAAACGACAGACCACCCATTCCAGGCTGGGGCCCG
ACGGGAGGAGGCGGAGGATCACCAATAAACGACAGCGGTGGAGGTGCCAA
AGCTCTTTTTGAGATAGCTGCTATATTCGCAATAATCTTTCTCAGCGTCT
CTGTGCTTGTGGCTATGGGTGGGGCCTTGGTGGAAGCTGCCCGTGTTCAA
GGCCGTCGAGACATCAGTGGCCTCTTTCCTTTGCAGCTATCGGGTGCTTC
GGCGCTCATTTGTTCGGTGGCTTTGCTCCAATATCTTTTTATTACTTTGG
CCGGCTTGCATGGTGGCCGTTACGAGGTGGGCTTTTGGTTAACACTTGCC
ACAGCCGCGGCGGTCGGTGTATTGACCACTGGGCAATATTTGATAAGTAA
GAAATTTTTTGATGAGGAGTACACGGACGGAAACGGCGGGAAAAGCTTCT
TTTTGCCGTCGCATCTAGGGAGAGGGGAAAGGTCCAACAGTCCAAGCGGG
CAGCTGCACAAATTGAGAGAAGAAACTACGGGCTGTGCAAAAGGTTGCTG
TGGAGGAGGGGGAGGGGAAGGGGGAGGGGAAGCCAGTCATGCCCTGAATC
GGCCGAGCTATGGTGCAGTTTGAATTCAAACAGCGTAGAGCTTAACTGAG
AGTTGCAGGCGGATTGGAAAGAAATCCATACCTGAAGAGCATGAGGTATG
CTACATCGA
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protein sequence of rna1117

>rna1117-protein ID=rna1117-protein|Name=rna1117|organism=Nannochloropsis gaditana|type=polypeptide|length=384bp
MSRNVFYRPKIPRRKCACGWALAAAFLGCPFVVRGQPSATRLLTIPCTLV
VPGNQQKADPVYGLTECYHATVCIDQPVASDVIRPPPTILPSNRSTPSAT
PQALGIGKSSPREVSQNERDVGGIESPFLGSGVESDNQPIEREDIPALEP
EMGSSRSRAFGIKPLRDSGDGNMYGGQKEVIRQEKDKAEASSTTESSEWD
FRRQRFRGSQIGMEKDIFEGDTGKGGSTGFTGQEVSGRASLKDAAGAVAE
SVEMKDDDAADVENPQDVGQGEEGAGTVPGTGIDGDPDVTGLDPGPDAGD
NGSNDNQADSTTSEVPSVDIPTPSPDPAAPPDVADLGLVGEIAIVRVCSR
EVVCQECGPVNVVPRCTCSLVLYNPLTDPDYFLK
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mRNA from alignment at CM002456.1:1223714..1225514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1117 ID=rna1117|Name=rna1117|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp|location=Sequence derived from alignment at CM002456.1:1223714..1225514- (Nannochloropsis gaditana)
CGGAATAACTGTAAAATTAAACATGAAATAAACTCAAAACTGTCCGATCA
TAAATCATATAAGGTATAAATGTCAAGAAACGTGTTTTACCGTCCCAAAA
TTCCAAGGAGAAAGTGTGCATGTGGTTGGGCTTTGGCGGCTGCCTTCCTT
GGGTGTCCGTTCGTCGTCAGAGGGCAACCTTCCGCTACAAGGCTTCTGAC
AATTCCATGCACACTCGTAGTACCTGGAAATCAACAAAAAGCGGACCCTG
TGTACGGCCTCACTGAATGCTACCATGCTACCGTATGCATCGACCAACCT
GTAGCCTCGGACGTAATTAGGCCTCCGCCAACCATCCTACCGTCGAACCG
ATCCACGCCGTCAGCAACTCCTCAGGCGCTAGGCATAGGAAAAAGTTCTC
CCAGAGAAGTCTCGCAGAATGAAAGGGATGTGGGCGGAATCGAAAGCCCC
TTTTTGGGAAGCGGTGTCGAAAGTGGTAGGTCAATTTGTCGGCAGCTATC
ATTCATTTTATTTTAAGTTACTATCCAATGTCGTGGCCCTTCATTTTACT
CCTCATGTTAATAAGTAACTGAAATAACAGATAACCAGCCTATTGAAAGA
GAAGATATACCAGCCTTGGAGCCAGAAATGGGATCGTCAAGGTCGCGGGC
CTTTGGAATTAAGCCACTGCGAGACTCAGGAGACGGCAATATGTACGGAG
GTCAGAAGGAAGTGATAAGGCAGGAGAAAGATAAAGCGGAGGCTTCGTCT
ACTACTGAGTCAAGTGAATGGGATTTCAGACGCCAGAGGTTTCGAGGGTC
GCAGATAGGCATGGAAAAGGATATCTTCGAAGGAGACACCGGAAAAGGAG
GAAGTACGGGATTCACGGGGCAGGAGGTCAGCGGCAGGGCATCCTTGAAA
GACGCTGCTGGGGCAGTGGCAGAGTCTGTTGAAATGAAAGACGATGATGC
CGCTGATGTAGAGAATCCTCAGGACGTTGGGCAGGGGGAAGAGGGTGCGG
GCACGGTTCCTGGAACGGGAATAGACGGGGACCCTGACGTGACTGGATTA
GACCCGGGGCCGGATGCGGGTGATAATGGCTCTAACGATAATCAAGCCGA
TTCCACCACTTCTGAGGTACCCTCTGTTGATATTCCAACACCTTCTCCGG
ATCCCGCAGCGCCTCCTGACGTAGCGGATCTGGGTTTGGTCGGGGAGATC
GCCATCGTGCGTGTGTGCAGCCGGGAGGTGGTGTGCCAAGAATGCGGGCC
CGTAAACGTGGTCCCACGGTGTACGTGCTCTCTCGTGCTCTACAATCCTC
TCACGGATCCGGACTACTTCTTGAAATGATGAAGAAGGCCGACGCAAGCA
AGTTAGCCGGAGAAAGATGAAGCAAAAAAACATCCTGAACAAGGCAACAA
AGTCGATGTAGCATACCTCATGCTCTTCAGGTATGGATTTCTTTCCAATC
CGCCTGCAACTCTCAGTTAAGCTCTACGCTGTTTGAATTCAAACTGCACC
ATAGCTCGGCCGATTCAGGGCATGACTGGCTTCCCCTCCCCCTTCCCCTC
CCCCTCCTCCACAGCAACCTTTTGCACAGCCCGTAGTTTCTTCTCTCAAT
TTGTGCAGCTGCCCGCTTGGACTGTTGGACCTTTCCCCTCTCCCTAGATG
CGACGGCAAAAAGAAGCTTTTCCCGCCGTTTCCGTCCGTGTACTCCTCAT
CAAAAAATTTCTTACTTATCAAATATTGCCCAGTGGTCAATACACCGACC
GCCGCGGCTGTGGCAAGTGTTAACCAAAAGCCCACCTCGTAACGGCCACC
A
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Coding sequence (CDS) from alignment at CM002456.1:1223714..1225514-

>rna1117 ID=rna1117|Name=rna1117|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at CM002456.1:1223714..1225514- (Nannochloropsis gaditana)
ATAACCAGCCTATTGAAAGAGAAGATATACCAGCCTTGGAGCCAGAAATG
GGATCGTCAAGGTCGCGGGCCTTTGGAATTAAGCCACTGCGAGACTCAGG
AGACGGCAATATGTACGGAGGTCAGAAGGAAGTGATAAGGCAGGAGAAAG
ATAAAGCGGAGGCTTCGTCTACTACTGAGTCAAGTGAATGGGATTTCAGA
CGCCAGAGGTTTCGAGGGTCGCAGATAGGCATGGAAAAGGATATCTTCGA
AGGAGACACCGGAAAAGGAGGAAGTACGGGATTCACGGGGCAGGAGGTCA
GCGGCAGGGCATCCTTGAAAGACGCTGCTGGGGCAGTGGCAGAGTCTGTT
GAAATGAAAGACGATGATGCCGCTGATGTAGAGAATCCTCAGGACGTTGG
GCAGGGGGAAGAGGGTGCGGGCACGGTTCCTGGAACGGGAATAGACGGGG
ACCCTGACGTGACTGGATTAGACCCGGGGCCGGATGCGGGTGATAATGGC
TCTAACGATAATCAAGCCGATTCCACCACTTCTGAGGTACCCTCTGTTGA
TATTCCAACACCTTCTCCGGATCCCGCAGCGCCTCCTGACGTAGCGGATC
TGGGTTTGGTCGGGGAGATCGCCATCGTGCGTGTGTGCAGCCGGGAGGTG
GTGTGCCAAGAATGCGGGCCCGTAAACGTGGTCCCACGGTGTACGTGCTC
TCTCGTGCTCTACAATCCTCTCACGGATCCGGACTACTTCTTGAAATGAA
TGTCAAGAAACGTGTTTTACCGTCCCAAAATTCCAAGGAGAAAGTGTGCA
TGTGGTTGGGCTTTGGCGGCTGCCTTCCTTGGGTGTCCGTTCGTCGTCAG
AGGGCAACCTTCCGCTACAAGGCTTCTGACAATTCCATGCACACTCGTAG
TACCTGGAAATCAACAAAAAGCGGACCCTGTGTACGGCCTCACTGAATGC
TACCATGCTACCGTATGCATCGACCAACCTGTAGCCTCGGACGTAATTAG
GCCTCCGCCAACCATCCTACCGTCGAACCGATCCACGCCGTCAGCAACTC
CTCAGGCGCTAGGCATAGGAAAAAGTTCTCCCAGAGAAGTCTCGCAGAAT
GAAAGGGATGTGGGCGGAATCGAAAGCCCCTTTTTGGGAAGCGGTGTCGA
AAGTGATAACCAGCCTATTGAAAGAGAAGATATACCAGCCTTGGAGCCAG
AAATGGGATCGTCAAGGTCGCGGGCCTTTGGAATTAAGCCACTGCGAGAC
TCAGGAGACGGCAATATGTACGGAGGTCAGAAGGAAGTGATAAGGCAGGA
GAAAGATAAAGCGGAGGCTTCGTCTACTACTGAGTCAAGTGAATGGGATT
TCAGACGCCAGAGGTTTCGAGGGTCGCAGATAGGCATGGAAAAGGATATC
TTCGAAGGAGACACCGGAAAAGGAGGAAGTACGGGATTCACGGGGCAGGA
GGTCAGCGGCAGGGCATCCTTGAAAGACGCTGCTGGGGCAGTGGCAGAGT
CTGTTGAAATGAAAGACGATGATGCCGCTGATGTAGAGAATCCTCAGGAC
GTTGGGCAGGGGGAAGAGGGTGCGGGCACGGTTCCTGGAACGGGAATAGA
CGGGGACCCTGACGTGACTGGATTAGACCCGGGGCCGGATGCGGGTGATA
ATGGCTCTAACGATAATCAAGCCGATTCCACCACTTCTGAGGTACCCTCT
GTTGATATTCCAACACCTTCTCCGGATCCCGCAGCGCCTCCTGACGTAGC
GGATCTGGGTTTGGTCGGGGAGATCGCCATCGTGCGTGTGTGCAGCCGGG
AGGTGGTGTGCCAAGAATGCGGGCCCGTAAACGTGGTCCCACGGTGTACG
TGCTCTCTCGTGCTCTACAATCCTCTCACGGATCCGGACTACTTCTTGAA
ATGAATGTCAAGAAACGTGTTTTACCGTCCCAAAATTCCAAGGAGAAAGT
GTGCATGTGGTTGGGCTTTGGCGGCTGCCTTCCTTGGGTGTCCGTTCGTC
GTCAGAGGGCAACCTTCCGCTACAAGGCTTCTGACAATTCCATGCACACT
CGTAGTACCTGGAAATCAACAAAAAGCGGACCCTGTGTACGGCCTCACTG
AATGCTACCATGCTACCGTATGCATCGACCAACCTGTAGCCTCGGACGTA
ATTAGGCCTCCGCCAACCATCCTACCGTCGAACCGATCCACGCCGTCAGC
AACTCCTCAGGCGCTAGGCATAGGAAAAAGTTCTCCCAGAGAAGTCTCGC
AGAATGAAAGGGATGTGGGCGGAATCGAAAGCCCCTTTTTGGGAAGCGGT
GTCGAAAGTG
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Synonyms
Publications