rna1115, rna1115 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1115
Unique Name	rna1115
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3186
Alignment location	CM002456.1:1221044..1222705 +

Link to JBrowse

Properties


Property Name	Value
Product	CRAL-TRIO domain protein
Orig transcript id	gnl\|cribi\|Naga_100006g52.8697.mrna
Orig protein id	gnl\|cribi\|Naga_100006g52.8697
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1221044..1222705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g52	gene1074	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1115	rna1115-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29608.1	cds1114	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1221044..1222705+
coding sequence from alignment at CM002456.1:1221044..1222705+

mRNA sequence

>rna1115 ID=rna1115|Name=rna1115|organism=Nannochloropsis gaditana|type=mRNA|length=3186bp
GGATCGAAGCGTTATTCATCTAATGGTGGCACAAAGGTGTACGGAAGTTT
TCCACCCAACCACTCTACCAATTCCCCTTCTTCGATAAAGTCAAGCAGCT
CCTTCTTGTCCTTCAACAGGTGTGTAGCGGATCGACTTTTGGCGTCTAAG
AACACCGAGACAAGGTTCTCCCAAATTTTACGGAAGATGAAGTTGACTCC
AAGCACAAGGAAGAGCTCTCCTCGGGCGGGATAGGACTCTTTGAGCATGG
TGTACAGGAGCTTCATGAACTGCGAGTGGGTCAAAACGAAAAATACATGA
AAATGTCGCCTCAAACTTAACATGGAGCGCTCAGCGGTTTTGCTCTCGAC
TTCACCAACGCCTGCCTTCCGCCCGCATCTCTTCGTAGAGATAGACCACA
GCTTTGACGGATTGCAGCGGCGCGAACTGACGAGGGTTGTGGAACTTGAC
GCGATAGTAGCAGATGGCCCGACCAACTTTGTCGTAGCCGGCAAAAACAA
ACTTGCCAGTTTTCAGCGTGGGAAGGACCTCCGCACGTGGAATGGGTAAG
TTTTCCTTCCTCCATGCCCTTCCTTTCTCTCCGTTTAATACCGCGTCCTT
GACGTTCCCATTCCATTCAGCCAGCAAGCGTATCACCTAAAATATTGTAG
GAGAGTGAGTACGTAAAGAGGATGACAAGGCATTTACTTTGCTTATCCTG
CCAGAACCAGCCAGTACTATGACAAGAACCCAGCTGTCCCAAGTGCCCCT
CAATTTCTTTTCTTCCGTGAATTTCTACGCTGAGCTATTTACGCCTCGTA
CACTTAAAGAGGCATGACACGACGTAACACCATATCTTCCCAAAAGGACA
ACCATTATTTCTTATCGCTTACCCACTTCCTCACCTCATCGTCGTCGGCG
TCTTCAACGGAGACGCCTGACTCCCGCACGTAGTGGATCATGTCCTCATA
TTTCTTCCGCCAAAAGTGTAAAGACTCATTGCTAATCACATCCTGCTTGG
ACAGGGGTTTCGCACGGTATTTTCGGGCCGGGGACGAGATGGTCCGCGTG
ACGCTAACTGGACTTGGCCCTGTCGTAGTCTCGTCCTTCTTGAGCTTGTT
CATTGGCCGATCTGTTTTTTCCATGTGTGCCATAAGTCTCTTTGCCGTTC
TGCGGGTGGATGGGTGATCGTGTGGAAATATTGCCCTTCATCCCAGGGGG
ATAGCTTGTGTGTCTCCAGAAAGGCAGGAGGCGGTCACGCGTACGTCAGC
GCTCAATATTGGAGTTAACATACTTTAAATGCTTCGCAATTGTGAAGATA
AATGTCTTTCCAGCGTGATAAAGCCGACAAGTAGGACATTGAGAGCATCT
AGTTTTCCGAATCTGCGTTGTTATACTCACTGATCGCTTTTTCATGTCGC
TTGTCGCTGCAGCCACAAAACGAGCATGCTATCATCCTGGGAGCTGAAGC
TTAAACCATCTCTATTCATGACACAGGTGGGGGGTATGGTGGCACTGCGA
CCACCACAACCAGCTTTTCCCCCTGTCTACGATGAAATAAACGTATGTCC
TTTTGAACTCCCCCCTGCAAATGACCTAGATTACCCATTGCCAGAGACTT
GCATTGCCAAGCGGCCTGCGGAGCCCCGGGATGCCTCGTTGCTTTTGGTG
TCAGATGCTTCGTCTCTATCTTCAACAGCAGACACTGTAGACACATGGGT
CTTTGACGGGATATTTCGAGAGCTCCCGTCCTTTTTGCCGGCCAAATCCC
TTCTTGTCCTGAACCGGTCGCGAGTGATTACTGCCCGTCTTCTCATGCGT
AAAGAGGGAACGGGAGGGAAGGCCGAGGTCTTATGCATCTCTCCCGTGTC
ACCCTCTTGGGATCCTGCAATCGCTTTGACAGCCTTGTCGAACCGAAGTG
TCTGGCGTTGTATGATCGGCGGAAGGAACATAAAGGCAGGGAGCCGGCTT
GTCCTAACCACAGAGAACGGTCTGTGCTTGACGGGGCAGGTGGAGGCCCG
CGAGGGGAAAGATGGCCTTGTCCGCTTTTCTTGGACACACACTGCGCACG
GTAAAGAGTCGCCCCCAACCTTTGGGGACGTCCTGGAGGACGTGGGGAAG
ATTCCCTTGCCGCCCTACATGAACCGTGCCTCGGACACGGCGGACCTCCA
AGACTACCAGACTGTGTACGCGACTGCCAGGGGCAGCGTGGCGGCCCCAA
CCGCTGGGTTGCATTTCACCCACTCCCTTCTTCAACAGCTGCGGAACGGG
CCTCAGCAAATCGAAACCTGCTACCTGACCTTGCACGTGGGGGCGGGCAC
GTTCCAGCCTGTCACCGGGAAGGAAGTGGGCGAGCATGCGATGCACTGGG
AGCGAATCCAAGTCCCTATGGACGCCTTAGAGACCCTCATCGAAGCAACT
GGGAGTGGGCGACCCATGGTCCCGGTAGGTACCACGTCCGTGCGCACGCT
GGAAACGTTGTATTGGTGGGGCGTGCGGCTCCTCTCTGCCCTTCCCTCCT
CTTGCTCCGCCCAGCGACCTTCCACCCTGTTGTCCGAAGACAGCGTCACG
AACCTGAGTTTGGGACAATGGGATGCTTATCATTACGGAGCAAAATGGCC
AACGCAAGCTTCCTCGTTGGTCCCTGCCGTGCATGCCCTGGAGGCTTTGC
GGGATCGAGCCAAGATGGAGGGCGTGGACCACGTAGGAGGAGAGACGCAA
TTGATGATCGCCCCGGGCTATCGTTTTGCGCTCTGCGATGGTTTGATCAC
GAATTTCCATCAGCCTCGATCGACTTTGCTGTTGTTGGTTGGGGCTTTTC
TGGGTGGATTGGGTCCTGTGCATCGAATTTATCGGCACGCACTTTCCAAA
GGATCGTACCGATTTCTAAGCTTCGGTGATTCCAACCTGATGATCCCACC
AGCACGAGTAATATTGCCCGTACGACCAAAAAGGGGCAACGTTTCAGGCA
AGTGTGCGGTTGCTTGGCCCAGGAAAGGGTGGGCAGCAGGGGTGAAAGAG
GAGCGATGGGTCAAGTTGCCTGACTGAGCATGTGCGCGAGGCGCAATGAT
CAAGCGTGAATATTGGAGTTGTGATAGAGGAAGATTAGAAAAGAATTTTG
GCAGCTATGTCATTGTATAATTGTAAATTTGTTGAGAACGGGCAACGAAA
GTACAGTAAAAACTACGAAAATTGGCTCATGATGCA

protein sequence of rna1115

>rna1115-protein ID=rna1115-protein|Name=rna1115|organism=Nannochloropsis gaditana|type=polypeptide|length=284bp
MAHMEKTDRPMNKLKKDETTTGPSPVSVTRTISSPARKYRAKPLSKQDVI
SNESLHFWRKKYEDMIHYVRESGVSVEDADDDEVIRLLAEWNGNVKDAVL
NGEKGRAWRKENLPIPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHN
PRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEF
MKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHL
LKDKKELLDFIEEGELVEWLGGKLPYTFVPPLDE

mRNA from alignment at CM002456.1:1221044..1222705+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1115 ID=rna1115|Name=rna1115|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp|location=Sequence derived from alignment at CM002456.1:1221044..1222705+ (Nannochloropsis gaditana)
TGAAAAAGCGATCAGTGAGTATAACAACGCAGATTCGGAAAACTAGATGC
TCTCAATGTCCTACTTGTCGGCTTTATCACGCTGGAAAGACATTTATCTT
CACAATTGCGAAGCATTTAAAGTATGTTAACTCCAATATTGAGCGCTGAC
GTACGCGTGaccgcctcctgcctttctGGAGACACACAAGCTATCCCCCT
GGGATGAAGGGCAATATTTCCACACGATCACCCATCCACCCGCAGAACGG
CAAAGAGACTTATGGCACACATGGAAAAAACAGATCGGCCAATGAACAAG
CTCAAGAAGGACGAGACTACGACAGGGCCAAGTCCAGTTAGCGTCACGCG
GACCATCTCGTCCCCGGCCCGAAAATACCGTGCGAAACCCCTGTCCAAGC
AGGATGTGATTAGCAATGAGTCTTTACACTTTTGGCGGAAGAAATATGAG
GACATGATCCACTACGTGCGGGAGTCAGGCGTCTCCGTTGAAGACGCCGA
CGACGATGAGGTGAGGAAGTGGGTAAGCGATAAGAAATAATGGTTGTCCT
TTTGGGAAGATATGGTGTTACGTCGTGTCATGCCTCTTTAAGTGTACGAG
GCGTAAATAGCTCAGCGTAGAAATTcacggaagaaaagaaattgaGGGGC
ACTTGGGACAGCTGGGTTCTTGTCATAGTACTGGCTGGTTCTGGCAGGAT
AAGCAAAGTAAATGCCTTGTCATCCTCTTTACGTACTCACTCTCCTACAA
TATTTTAGGTGATACGCTTGCTGGCTGAATGGAATGGGAACGTCAAGGAC
GCGGTATTAAacggagagaaaggaagggcatggaggaaggaaaacttACC
CATTCCACGTGCGGAGGTCCTTCCCACGCTGAAAACTGGCAAGTTTGTTT
TTGCCGGCTACGACAAAGTTGGTCGGGCCATCTGCTACTATCGCGTCAAG
TTCCACAACCCTCGTCAGTTCGCGCCGCTGCAATCCGTCAAAGCTGTGGT
CTATCTCTACGAAGAGATGCGGGCGGAAGGCAGGCTGcggggggcggaag
agatTTGCGTCGTGGTGGACCGGACCGATGCCAAGAGCGCGAATATGGAC
ATCGAGGTTCGTACCGTTGGTGAAGTCGAGAGCAAAACCGCTGAGCGCTC
CATGTTAAGTTTGAGGCGACATTTTCATGTATTTTTCGTTTTGACCCACT
CGCAGTTCATGAAGCTCCTGTACACCATGCTCAAAGAGTCCTATCCCGCC
CGAGGAGAGCTCTTCCTTGTGCTTGGAGTCAACTTCATCTTCCGTAAAAT
TTGGGAGAACCTTGTCTCGGTGTTCTTAGACGCCAAAAGTCGATCCGCTA
CACACCTGttgaaggacaagaaggagctGCTTGACTTTATCGAAGAAGGG
GAATTGGTAGAGTGGTTGGGTGGAAAACTTCCGTACACCTTTGTGCCACC
ATTAGATGAATAACGCTTCGATCCGACGTGGACATTTTGCGGAAGCGTGC
GTGTCATGCCCGGGTACGCATCTCGGTAGCAAGCTGCATAGCACATGAAA
AGGTGTAAGGGTCGTGAAAGTCAGCGCGTTTGATTCATCTCACGAAATAC
AACAAAATTAAGTTCTTTTAATCTCAGTGAAACCAAGGTATTGTTCCGTT
TGGTAGCTTTTA

Coding sequence (CDS) from alignment at CM002456.1:1221044..1222705+

>rna1115 ID=rna1115|Name=rna1115|organism=Nannochloropsis gaditana|type=CDS|length=2565bp|location=Sequence derived from alignment at CM002456.1:1221044..1222705+ (Nannochloropsis gaditana)
ATGGCACACATGGAAAAAACAGATCGGCCAATGAACAAGCTCAAGAAGGA
CGAGACTACGACAGGGCCAAGTCCAGTTAGCGTCACGCGGACCATCTCGT
CCCCGGCCCGAAAATACCGTGCGAAACCCCTGTCCAAGCAGGATGTGATT
AGCAATGAGTCTTTACACTTTTGGCGGAAGAAATATGAGGACATGATCCA
CTACGTGCGGGAGTCAGGCGTCTCCGTTGAAGACGCCGACGACGATGAGG
TGATACGCTTGCTGGCTGAATGGAATGGGAACGTCAAGGACGCGGTATTA
AacggagagaaaggaagggcatggaggaaggaaaacttACCCATTCCACG
TGCGGAGGTCCTTCCCACGCTGAAAACTGGCAAGTTTGTTTTTGCCGGCT
ACGACAAAGTTGGTCGGGCCATCTGCTACTATCGCGTCAAGTTCCACAAC
CCTCGTCAGTTCGCGCCGCTGCAATCCGTCAAAGCTGTGGTCTATCTCTA
CGAAGAGATGCGGGCGGAAGGCAGGCTGcggggggcggaagagatTTGCG
TCGTGGTGGACCGGACCGATGCCAAGAGCGCGAATATGGACATCGAGTTC
ATGAAGCTCCTGTACACCATGCTCAAAGAGTCCTATCCCGCCCGAGGAGA
GCTCTTCCTTGTGCTTGGAGTCAACTTCATCTTCCGTAAAATTTGGGAGA
ACCTTGTCTCGGTGTTCTTAGACGCCAAAAGTCGATCCGCTACACACCTG
ttgaaggacaagaaggagctGCTTGACTTTATCGAAGAAGGGGAATTGGT
AGAGTGGTTGGGTGGAAAACTTCCGTACACCTTTGTGCCACCATTAGATG
AATAAATGGCACACATGGAAAAAACAGATCGGCCAATGAACAAGCTCAAG
AAGGACGAGACTACGACAGGGCCAAGTCCAGTTAGCGTCACGCGGACCAT
CTCGTCCCCGGCCCGAAAATACCGTGCGAAACCCCTGTCCAAGCAGGATG
TGATTAGCAATGAGTCTTTACACTTTTGGCGGAAGAAATATGAGGACATG
ATCCACTACGTGCGGGAGTCAGGCGTCTCCGTTGAAGACGCCGACGACGA
TGAGGTGATACGCTTGCTGGCTGAATGGAATGGGAACGTCAAGGACGCGG
TATTAAacggagagaaaggaagggcatggaggaaggaaaacttACCCATT
CCACGTGCGGAGGTCCTTCCCACGCTGAAAACTGGCAAGTTTGTTTTTGC
CGGCTACGACAAAGTTGGTCGGGCCATCTGCTACTATCGCGTCAAGTTCC
ACAACCCTCGTCAGTTCGCGCCGCTGCAATCCGTCAAAGCTGTGGTCTAT
CTCTACGAAGAGATGCGGGCGGAAGGCAGGCTGcggggggcggaagagat
TTGCGTCGTGGTGGACCGGACCGATGCCAAGAGCGCGAATATGGACATCG
AGTTCATGAAGCTCCTGTACACCATGCTCAAAGAGTCCTATCCCGCCCGA
GGAGAGCTCTTCCTTGTGCTTGGAGTCAACTTCATCTTCCGTAAAATTTG
GGAGAACCTTGTCTCGGTGTTCTTAGACGCCAAAAGTCGATCCGCTACAC
ACCTGttgaaggacaagaaggagctGCTTGACTTTATCGAAGAAGGGGAA
TTGGTAGAGTGGTTGGGTGGAAAACTTCCGTACACCTTTGTGCCACCATT
AGATGAATAAATGGCACACATGGAAAAAACAGATCGGCCAATGAACAAGC
TCAAGAAGGACGAGACTACGACAGGGCCAAGTCCAGTTAGCGTCACGCGG
ACCATCTCGTCCCCGGCCCGAAAATACCGTGCGAAACCCCTGTCCAAGCA
GGATGTGATTAGCAATGAGTCTTTACACTTTTGGCGGAAGAAATATGAGG
ACATGATCCACTACGTGCGGGAGTCAGGCGTCTCCGTTGAAGACGCCGAC
GACGATGAGGTGATACGCTTGCTGGCTGAATGGAATGGGAACGTCAAGGA
CGCGGTATTAAacggagagaaaggaagggcatggaggaaggaaaacttAC
CCATTCCACGTGCGGAGGTCCTTCCCACGCTGAAAACTGGCAAGTTTGTT
TTTGCCGGCTACGACAAAGTTGGTCGGGCCATCTGCTACTATCGCGTCAA
GTTCCACAACCCTCGTCAGTTCGCGCCGCTGCAATCCGTCAAAGCTGTGG
TCTATCTCTACGAAGAGATGCGGGCGGAAGGCAGGCTGcggggggcggaa
gagatTTGCGTCGTGGTGGACCGGACCGATGCCAAGAGCGCGAATATGGA
CATCGAGTTCATGAAGCTCCTGTACACCATGCTCAAAGAGTCCTATCCCG
CCCGAGGAGAGCTCTTCCTTGTGCTTGGAGTCAACTTCATCTTCCGTAAA
ATTTGGGAGAACCTTGTCTCGGTGTTCTTAGACGCCAAAAGTCGATCCGC
TACACACCTGttgaaggacaagaaggagctGCTTGACTTTATCGAAGAAG
GGGAATTGGTAGAGTGGTTGGGTGGAAAACTTCCGTACACCTTTGTGCCA
CCATTAGATGAATAA

Synonyms

Publications