EWM29608.1, cds1114 (CDS) Nannochloropsis gaditana

Overview
NameEWM29608.1
Unique Namecds1114
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1221305..1221553 +
Alignment locationCM002456.1:1221802..1222149 +
Alignment locationCM002456.1:1222249..1222506 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29608.1
ProductCRAL-TRIO domain protein
Orig transcript idgnl|cribi|Naga_100006g52.8697.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1221305..1221553 +
CM002456.1supercontigCM002456.1:1221802..1222149 +
CM002456.1supercontigCM002456.1:1222249..1222506 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|585112179|gb|EWM29608.1| (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MAHMEKTDRPMNKLKKDETTTGPSPVSVTRTISSPARKYRAKPLSKQDVISNESLHFWRKKYEDMIHYVRESGVSVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLPIPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGGKLPYTFVPPLDE 284
            MAHMEKTDRPMNKLKKDETTTGPSPVSVTRTISSPARKYRAKPLSKQDVISNESLHFWRKKYEDMIHYVRESGVSVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLPIPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGGKLPYTFVPPLDE
Sbjct:    1 MAHMEKTDRPMNKLKKDETTTGPSPVSVTRTISSPARKYRAKPLSKQDVISNESLHFWRKKYEDMIHYVRESGVSVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLPIPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGGKLPYTFVPPLDE 284          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|585104785|gb|EWM23633.1| (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 93.2041 bits (230), Expect = 6.829e-19
Identity = 58/204 (28.43%), Postives = 97/204 (47.55%), Query Frame = 0
Query:   79 ADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLPIPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAE--GRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGGKLPYTFVP 280
            A + ++ R L  ++     A+   E    WR +NLPI +   L  L+ G+F F G D  GR + YY +  H+P+     + ++ + Y  E++ AE    ++G     +V D  +    N D EF++      +  YP      L++ V F  R +W N  + FLD +  S   ++   ++L D+I E EL+   GGK  + F P
Sbjct:   39 AKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKG---FTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMW-NTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDP 238          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|1134868678|gb|OMJ67334.1| (hypothetical protein SteCoe_35521 [Stentor coeruleus])

HSP 1 Score: 88.5817 bits (218), Expect = 3.001e-17
Identity = 64/215 (29.77%), Postives = 108/215 (50.23%), Query Frame = 0
Query:   64 DMIHYVRESGVSVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLP--IPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMD---IEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGGK 273
            D+ + V E     +  + D ++R+L   +  V+ A    +K   WRK+     I   E+   +KTGK  F G D  GR     R ++H P QF+  ++++ V+YL E+       R   +ICV+ DR D  SAN D   IE  K L  ML++ Y  R     +L VN+++  I++  +   L+ K+R+  H+L++ + L +     +L+   GG+
Sbjct:   17 DLTNLVHEITDEEKYTNQDMLLRVLRARDLKVQAAYEMWQKWYKWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFSLEETMRYVIYLVEQGVKLADERHTGQICVIYDRGDISSANKDGNLIELGKSLAAMLQDFYAERLGAVYILHVNWLYWLIFQ-AIKPLLNKKTRNKMHILRNAEGLKEHFHPSQLMVEYGGE 230          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|1134886566|gb|OMJ83991.1| (hypothetical protein SteCoe_14977 [Stentor coeruleus])

HSP 1 Score: 85.8853 bits (211), Expect = 2.715e-16
Identity = 64/207 (30.92%), Postives = 104/207 (50.24%), Query Frame = 0
Query:   79 ADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLP--IPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMD---IEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGG----KLPY 276
             + D +IR+L   +  V+ A    +K   WRK+     I   E+   +KTGK  F G D  GR     R ++H P QFA  ++++ V+YL E+       +   ++CV+ DR D  SAN D   IE  K L  ML++ Y  R     +L VN+++  I++  V   L+ K+R+  H+L++ + L +     +L+   GG    + PY
Sbjct:   32 TNQDMLIRVLRARDLKVQPAYEMWQKWYRWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFALEETMRYVIYLVEQGVKLADEKHTGQMCVIYDRGDISSANKDGNLIELGKGLAAMLQDFYAERLGAVYILHVNWLYWLIFQ-AVKPLLNKKTRNKIHILRNVEGLKEHFNPSQLLVEYGGENEFRCPY 237          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|1072956179|ref|XP_018488989.1| (PREDICTED: random slug protein 5-like [Raphanus sativus])

HSP 1 Score: 82.8037 bits (203), Expect = 6.601e-15
Identity = 65/210 (30.95%), Postives = 103/210 (49.05%), Query Frame = 0
Query:   75 SVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLP---IPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRL-RGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKK---ELLDFIEEGELVEWLGGKLPYT 277
            S ++ DD  + R L   + +++ A +   K  AWRK  LP   IP +E+   L   K    G+DK GR I       HNP +  P +  + VVY  E++ A  R+ RG E+   +VD      +N DI       + L++ YP R +    +   +IF   W+ ++  F+D K+R     +++KK    LL+ I E +L +  GGK+P T
Sbjct:   54 STKEVDDLMIRRFLRARDMDIEKASVLFLKYLAWRKTVLPKGHIPESEIANDLSHNKVCMQGHDKKGRPILVIVGNRHNPSKGNPEEFKRFVVYALEKICA--RIPRGEEKFRAIVDLQGWGYSNCDIRGYLAALSTLQDCYPERLDKLYFVRAPYIFMTAWK-VIYPFVDTKTRKKIVFVENKKLTPTLLEDINETQLPDIYGGKMPLT 260          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|954189045|gb|KRX01853.1| (Thioredoxin-like fold [Pseudocohnilembus persalinus])

HSP 1 Score: 84.7297 bits (208), Expect = 9.727e-15
Identity = 58/207 (28.02%), Postives = 102/207 (49.28%), Query Frame = 0
Query:   80 DDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLP--IPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKL---LYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGGKLPYTFVPP 281
            ++++++R     + N K+A    EK   W  +N    +   ++L  LK GK    GYDK G  I   +V+ H P+Q    ++ K  +Y+      E    G+E I ++ DR    S N D +F+ L   L  M++++Y  R +  ++L  NF F+ I+  +  VFL  +++   H+   K+ LL  I+  +L+E  GG   + +  P
Sbjct:   57 NENQLVRQFIARDYNEKNAFKLWEKWANWMLQNKADDLLEKDILNELKIGKAFMNGYDKKGNPIIIIQVRKHIPKQVPLDETKKFFIYMINLALEEADRIGSERITLLWDRKGFTSKNYDSDFLSLGKELVGMMQDTYAERLDSMIILYPNFFFKMIY-GIFKVFLTKRTKDKIHVYSKKENLLKLIDSSQLLEEHGGSSHFQYNFP 262          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|923922547|ref|XP_013730459.1| (PREDICTED: random slug protein 5-like isoform X1 [Brassica napus])

HSP 1 Score: 81.6481 bits (200), Expect = 1.267e-14
Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 0
Query:   75 SVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLP---IPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKK---ELLDFIEEGELVEWLGGKLPYT 277
            S ++ DD  + R L   + +++ A     K  AW+K  LP   IP +E+   L   K    G+DK+GR I       HNP +  P +  + VVY  E++ A    RG E+   +VD      +N DI       + L++ YP R +    +   +IF   W+ ++  F+D  +R     +++KK    LL+ I+E +L +  GGK+P T
Sbjct:   48 STKEVDDLMIRRFLRARDMDIEKASTLFLKYLAWKKTVLPKGHIPESEIANDLSHNKVCMQGHDKMGRPIVVAFGNRHNPSKGNPEEFKRFVVYTLEKICAR-MPRGEEKFRAIVDLQGWGYSNCDIRGYLAALSTLQDCYPERLDKLYFVRAPYIFMTAWK-VIYPFVDTNTRKKIVFVENKKLTPTLLEDIDEAQLPDIYGGKMPLT 254          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|829171967|ref|XP_012653198.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|586737512|gb|EWS74225.1| divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 81.2629 bits (199), Expect = 3.489e-14
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 0
Query:  103 EKGRAWRKENLPI----PRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAE-EICVVVDRTDAKSANMD---IEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGG 272
            EK   W +E  P       + +   L TGK  +  +D   R   YYR+K+H P+  +  +SV+  +++ E+   EG   G+E  ICV+ DR        D   ++ M+ L  +L++ YP R  +F VLG N+ +R  ++ +V+ F+  K+     +L +  ELL F  +  L++  GG
Sbjct:   73 EKWIKWHQEYRPDLISDKESTIQKQLSTGKLFWHKFDNERRPCLYYRMKYHVPKLASVEESVRFFLFMLEQGIKEGIKLGSEGTICVIYDRRGYTKKQYDENAMKTMRALVPILQDYYPERLSMFYVLGANWFYRAAFK-VVATFMSEKTSKKVKVLGEDSELLQFFNKQNLIKEYGG 249          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|685370022|ref|XP_009118825.1| (PREDICTED: random slug protein 5-like [Brassica rapa])

HSP 1 Score: 80.4925 bits (197), Expect = 4.091e-14
Identity = 62/209 (29.67%), Postives = 100/209 (47.85%), Query Frame = 0
Query:   75 SVEDADDDEVIRLLAEWNGNVKDAVLNGEKGRAWRKENLP---IPRAEVLPTLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKK---ELLDFIEEGELVEWLGGKLPYT 277
            S ++ DD  + R L   + +++ A     K  AW+K  LP   IP +E+   L   K    G+DK GR I       HNP +  P +  + VVY  E++ A    RG E+   +VD      +N DI       + L++ YP R +    +   +IF   W+ ++  F+D  +R     +++KK    LL+ I+E +L +  GGK+P T
Sbjct:   48 STKEVDDLMIRRFLRARDMDIEKASALFLKYLAWKKTVLPKGHIPESEIANDLSHNKVCMQGHDKKGRPILVIVGNRHNPSKGNPEEFKRFVVYTLEKICAR-MPRGEEKFRAIVDLQGWGYSNCDIRGYLAALSTLQDCYPERLDKLYFVRAPYIFMTAWK-VIYPFVDTNTRKKIVFVENKKLTPTLLEDIDEAQLPDIYGGKMPLT 254          
BLAST of EWM29608.1 vs. NCBI_GenBank
Match: gi|1134805870|gb|OMJ15582.1| (CRAL-TRIO domain-containing protein [Smittium culicis])

HSP 1 Score: 80.4925 bits (197), Expect = 1.432e-13
Identity = 62/224 (27.68%), Postives = 102/224 (45.54%), Query Frame = 0
Query:   72 SGVSVEDADDDEVIRLLA--EWNGNVKDAVLNGEKGRAWRKENLPIPRAEVLP----------TLKTGKFVFAGYDKVGRAICYYRVKFHNPRQFAPLQSVKAVVYLYEEMRAEGRLRGAEEICVVVDRTDAKSANMDIEFMKLLYTMLKESYPARGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKKELLDFIEEGELVEWLGG--KLPYTFVPP 281
            S   + D  D  ++R L   +WN N    +L  EK   WR +N    R   L            LK+G     G DK+   I Y  V+       +  +++K  VY+ E  R     +  E + ++VD  D    N ++EF K+    L + YP   EL ++   +++F+ IW N++   LD    S  +  K+K++LL F +  +L+E  GG  K  + ++PP
Sbjct:  105 SDTCLNDTPDSMLLRFLRARKWNVNASFEML--EKCLIWRAQN----RINELVWYGESHLNYRYLKSGLGYLNGVDKLNNPILYIPVRVFISNNQSTKEALKNTVYVMENARLFLSPQ-VERVSIIVDTADMGLKNFEMEFFKMFLKFLSDYYPESLELVVIYSSSWVFKSIW-NMIKGLLDPVVASKIYFSKNKEDLLKFFDPDQLLEEYGGTNKNKFNYIPP 320          
The following BLAST results are available for this feature:
BLAST of EWM29608.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112179|gb|EWM29608.1|0.000e+0100.00CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
gi|585104785|gb|EWM23633.1|6.829e-1928.43CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
gi|1134868678|gb|OMJ67334.1|3.001e-1729.77hypothetical protein SteCoe_35521 [Stentor coerule... [more]
gi|1134886566|gb|OMJ83991.1|2.715e-1630.92hypothetical protein SteCoe_14977 [Stentor coerule... [more]
gi|1072956179|ref|XP_018488989.1|6.601e-1530.95PREDICTED: random slug protein 5-like [Raphanus sa... [more]
gi|954189045|gb|KRX01853.1|9.727e-1528.02Thioredoxin-like fold [Pseudocohnilembus persalinu... [more]
gi|923922547|ref|XP_013730459.1|1.267e-1429.67PREDICTED: random slug protein 5-like isoform X1 [... [more]
gi|829171967|ref|XP_012653198.1|3.489e-1429.78divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
gi|685370022|ref|XP_009118825.1|4.091e-1429.67PREDICTED: random slug protein 5-like [Brassica ra... [more]
gi|1134805870|gb|OMJ15582.1|1.432e-1327.68CRAL-TRIO domain-containing protein [Smittium culi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1115rna1115Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications