rna1114, rna1114 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1114
Unique Name	rna1114
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1893
Alignment location	CM002456.1:1219252..1222517 -

Link to JBrowse

Properties


Property Name	Value
Product	s-adenosylmethionine:trna ribosyltransferase-isomerase
Orig transcript id	gnl\|cribi\|Naga_100006g53.8676.mrna
Orig protein id	gnl\|cribi\|Naga_100006g53.8676
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1219252..1222517 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g53	gene1073	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29587.1	cds1113	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1114	rna1114-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1219252..1222517-
coding sequence from alignment at CM002456.1:1219252..1222517-

mRNA sequence

>rna1114 ID=rna1114|Name=rna1114|organism=Nannochloropsis gaditana|type=mRNA|length=1893bp
ATGACTGGTACTGGACATACGGAGGACGGACACGAATGGCATGACGCTCG
GGAAGAAGAGTTTGCAACCGTTCCATCTTGGGCTTTGTCCTCCCCTCACC
CTTTGAACGAGCTTCGTCAGAGGAAGAACCCCGACGCCTCCGACAAAAGT
GTACCTTTGCCCCCCGCAACGCCTGAGACGTCGTCAACGTGGTCTTCATG
GCTTTCGTCCTCCTCCCCAACGCAGTCTTCAGCCGTGAAAAGGGACTGGT
CAATCGAGGCTCGCCGCCGCTTAGGGGGATTCGAAACGTTTTTCCGCACA
ACTGTACCGTATGGATTGGGGTGCATCTATTATATTGTGGACTTTGAAGG
CCCTCCGGACACAGACCTCCTGGCTGAAGCCATGCGTTTCCAAGTCAAAC
AGCACCCTAACCTCCGCTCTCGTCTGCATGGAGACTATTTGGAAGCCGTT
GCCTTCGAAGATTGTCCTCAAATAGTCGTCCCGTACATCGAATCAGAGGA
CGTAGTGGGGTACACAGAGCGGGCCATGAAGGCAGCGAAGGAGCTGAAGG
CTGGTCGCGACCCGTACTTGTGGCAGCTGGCTTTGCACCACACGCCCTCG
TCCGAGTCCCACCACCTCCTCTTCCTCATCCATCATGCCATCTCCGACGG
CGACTCCATCCTCCGCTGCCTCCAGTCTTTGATGGAGGGCATGGCCTCCC
TCTCTCCATTGTCACCTCACGAGCGCGAACGGAAGCTTGCACAGGTAAAG
GCCTTGCCACAGCTAGCCAGCGCCGATGAGCAGCTATACCCCCAATATAA
TGGGTACTACCTGGTCTACCATTTCCGGACGTTGTTTCGTGAACTGTGGC
GTGTAGTGCTTCGGCCTCGCCTTCCTCGTCCTTGCCAAATGACCTTGACA
GAGGCACCGCGAGTGACCCGTTGCCTCTCCTTCGTCTTGGACGCCCCCGA
CTTCAAACGCTTGCTGAAAACGTGCAAAGCCAACCAGACTTCTGTGACGG
GAGCATTGGTAGCAGCGACCTCGCAGGCGATGGAAGGCTTTATCGAGGGG
CCACCCTCTTCTTTCAAAATGAAGGTGGAGGTGCTAGTCAATTTTCGCGG
CAAGGCAAGTGCCACGTTGGGTTCCAAGGATTCCCACCAGCTCTACGCGG
CCCCCATGGACATGCTACTGCCGGCGGGGAACAAGGCTGAGACCAGACTT
GAATTTTGGCGGACCGCCCGGGAGGCCAAGCGCGAGATCGACGCCTTCGC
TACGGAACCCCATCGGATCGTGGACGCTTTGGAGTTCTTCTACATCATGG
GCCACCATCCCATTGCCATGCCGCTGATCCGCCTGTTCGGTGCCTCTCCA
CGGCAAGGCCGGCAAAAGGCCCTCTCAATCTCCAACCTGGGGTCCACGGA
CAAGCTTTTCCAGCCGGCAGGGCCCTGGCGCTTGGGCCGGATGCAGATGG
GTATTGACGAGCTTCTCTTCGGTCACAGCGTCTTCTTGGCCATGGCTTCG
CACGAGGGACGGTTGAATTTCAGCCTGTCCTACATCGAACCCATCGTCTC
CAAGGCCATGGCCGAGAATTACTCGCAAGCAGTTATCCGCGCCCTGATCG
ACGCCTGCCCTCCGGCCAGCGAAGACGCGCCTCCGACTCCTCAGACGCCG
GTCTCTCGAATCCTGAAAAGTAAATCGCGTGTTTTCGTTGATTACCTTTG
GTCCAGCACACTGAAAAGGTCGGAAGAAGTCCTCAACATGCATGCTTATG
GGACTCTTTGGAGGTCAAGTATTTATGAGATCAAAGATCAACAGGAAAAG
CAATCAAAATCAAATTCTCTATGGAAGGCGCAAAGAAAACTGCACTCGTC
CAAAAGCCACCTACAATACAGACATGTCGCCTGTGCATCATGA

protein sequence of rna1114

>rna1114-protein ID=rna1114-protein|Name=rna1114|organism=Nannochloropsis gaditana|type=polypeptide|length=533bp
MLSSWELKLKPSLFMTQVGGMVALRPPQPAFPPVYDEINVCPFELPPAND
LDYPLPETCIAKRPAEPRDASLLLVSDASSLSSTADTVDTWVFDGIFREL
PSFLPAKSLLVLNRSRVITARLLMRKEGTGGKAEVLCISPVSPSWDPAIA
LTALSNRSVWRCMIGGRNIKAGSRLVLTTENGLCLTGQVEAREGKDGLVR
FSWTHTAHGKESPPTFGDVLEDVGKIPLPPYMNRASDTADLQDYQTVYAT
ARGSVAAPTAGLHFTHSLLQQLRNGPQQIETCYLTLHVGAGTFQPVTGKE
VGEHAMHWERIQVPMDALETLIEATGSGRPMVPVGTTSVRTLETLYWWGV
RLLSALPSSCSAQRPSTLLSEDSVTNLSLGQWDAYHYGAKWPTQASSLVP
AVHALEALRDRAKMEGVDHVGGETQLMIAPGYRFALCDGLITNFHQPRST
LLLLVGAFLGGLGPVHRIYRHALSKGSYRFLSFGDSNLMIPPARVILPVR
PKRGNVSGKCAVAWPRKGWAAGVKEERWVKLPD

mRNA from alignment at CM002456.1:1219252..1222517-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1114 ID=rna1114|Name=rna1114|organism=Nannochloropsis gaditana|type=mRNA|length=3266bp|location=Sequence derived from alignment at CM002456.1:1219252..1222517- (Nannochloropsis gaditana)
GGATCGAAGCGTTATTCATCTAATGGTGGCACAAAGGTGTACGGAAGTTT
TCCACCCAACCACTCTACCAATTCCCCTTCTTCGATAAAGTCAAGCAGCT
CCTTCTTGTCCTTCAACAGGTGTGTAGCGGATCGACTTTTGGCGTCTAAG
AACACCGAGACAAGGTTCTCCCAAATTTTACGGAAGATGAAGTTGACTCC
AAGCACAAGGAAGAGCTCTCCTCGGGCGGGATAGGACTCTTTGAGCATGG
TGTACAGGAGCTTCATGAACTGCGAGTGGGTCAAAACGAAAAATACATGA
AAATGTCGCCTCAAACTTAACATGGAGCGCTCAGCGGTTTTGCTCTCGAC
TTCACCAACGGTACGAACCTCGATGTCCATATTCGCGCTCTTGGCATCGG
TCCGGTCCACCACGACGCAAATCTCTTCCGCCCCCCGCAGCCTGCCTTCC
GCCCGCATCTCTTCGTAGAGATAGACCACAGCTTTGACGGATTGCAGCGG
CGCGAACTGACGAGGGTTGTGGAACTTGACGCGATAGTAGCAGATGGCCC
GACCAACTTTGTCGTAGCCGGCAAAAACAAACTTGCCAGTTTTCAGCGTG
GGAAGGACCTCCGCACGTGGAATGGGTAAGTTTTCCTTCCTCCATGCCCT
TCCTTTCTCTCCGTTTAATACCGCGTCCTTGACGTTCCCATTCCATTCAG
CCAGCAAGCGTATCACCTAAAATATTGTAGGAGAGTGAGTACGTAAAGAG
GATGACAAGGCATTTACTTTGCTTATCCTGCCAGAACCAGCCAGTACTAT
GACAAGAACCCAGCTGTCCCAAGTGCCCCTCAATTTCTTTTCTTCCGTGA
ATTTCTACGCTGAGCTATTTACGCCTCGTACACTTAAAGAGGCATGACAC
GACGTAACACCATATCTTCCCAAAAGGACAACCATTATTTCTTATCGCTT
ACCCACTTCCTCACCTCATCGTCGTCGGCGTCTTCAACGGAGACGCCTGA
CTCCCGCACGTAGTGGATCATGTCCTCATATTTCTTCCGCCAAAAGTGTA
AAGACTCATTGCTAATCACATCCTGCTTGGACAGGGGTTTCGCACGGTAT
TTTCGGGCCGGGGACGAGATGGTCCGCGTGACGCTAACTGGACTTGGCCC
TGTCGTAGTCTCGTCCTTCTTGAGCTTGTTCATTGGCCGATCTGTTTTTT
CCATGTGTGCCATAAGTCTCTTTGCCGTTCTGCGGGTGGATGGGTGATCG
TGTGGAAATATTGCCCTTCATCCCAGGGGGATAGCTTGTGTGTCTCCAGA
AAGGCAGGAGGCGGTCACGCGTACGTCAGCGCTCAATATTGGAGTTAACA
TACTTTAAATGCTTCGCAATTGTGAAGATAAATGTCTTTCCAGCGTGATA
AAGCCGACAAGTAGGACATTGAGAGCATCTAGTTTTCCGAATCTGCGTTG
TTATACTCACTGATCGCTTTTTCATGTCGCTTGTCGCTGCAGCCACAAAA
CGAGCATGCTATCATCCTGGGAGCTGAAGCTTAAACCATCTCTATTCATG
ACACAGGTGGGGGGTATGGTGGCACTGCGACCACCACAACCAGCTTTTCC
CCCTGTCTACGATGAAATAAACGTATGTCCTTTTGAACTCCCCCCTGCAA
ATGACCTAGATTACCCATTGCCAGAGACTTGCATTGCCAAGCGGCCTGCG
GAGCCCCGGGATGCCTCGTTGCTTTTGGTGTCAGATGCTTCGTCTCTATC
TTCAACAGCAGACACTGTAGACACATGGGTCTTTGACGGGATATTTCGAG
AGCTCCCGTCCTTTTTGCCGGCCAAATCCCTTCTTGTCCTGAACCGGTCG
CGAGTGATTACTGCCCGTCTTCTCATGCGTAAAGAGGGAACGGGAGGGAA
GGCCGAGGTCTTATGCATCTCTCCCGTGTCACCCTCTTGGGATCCTGCAA
TCGCTTTGACAGCCTTGTCGAACCGAAGTGTCTGGCGTTGTATGATCGGC
GGAAGGAACATAAAGGCAGGGAGCCGGCTTGTCCTAACCACAGAGAACGG
TCTGTGCTTGACGGGGCAGGTGGAGGCCCGCGAGGGGAAAGATGGCCTTG
TCCGCTTTTCTTGGACACACACTGCGCACGGTAAAGAGTCGCCCCCAACC
TTTGGGGACGTCCTGGAGGACGTGGGGAAGATTCCCTTGCCGCCCTACAT
GAACCGTGCCTCGGACACGGCGGACCTCCAAGACTACCAGACTGTGTACG
CGACTGCCAGGGGCAGCGTGGCGGCCCCAACCGCTGGGTTGCATTTCACC
CACTCCCTTCTTCAACAGCTGCGGAACGGGCCTCAGCAAATCGAAACCTG
CTACCTGACCTTGCACGTGGGGGCGGGCACGTTCCAGCCTGTCACCGGGA
AGGAAGTGGGCGAGCATGCGATGCACTGGGAGCGAATCCAAGTCCCTATG
GACGCCTTAGAGACCCTCATCGAAGCAACTGGGAGTGGGCGACCCATGGT
CCCGGTAGGTACCACGTCCGTGCGCACGCTGGAAACGTTGTATTGGTGGG
GCGTGCGGCTCCTCTCTGCCCTTCCCTCCTCTTGCTCCGCCCAGCGACCT
TCCACCCTGTTGTCCGAAGACAGCGTCACGAACCTGAGTTTGGGACAATG
GGATGCTTATCATTACGGAGCAAAATGGCCAACGCAAGCTTCCTCGTTGG
TCCCTGCCGTGCATGCCCTGGAGGCTTTGCGGGATCGAGCCAAGATGGAG
GGCGTGGACCACGTAGGAGGAGAGACGCAATTGATGATCGCCCCGGGCTA
TCGTTTTGCGCTCTGCGATGGTTTGATCACGAATTTCCATCAGCCTCGAT
CGACTTTGCTGTTGTTGGTTGGGGCTTTTCTGGGTGGATTGGGTCCTGTG
CATCGAATTTATCGGCACGCACTTTCCAAAGGATCGTACCGATTTCTAAG
CTTCGGTGATTCCAACCTGATGATCCCACCAGCACGAGTAATATTGCCCG
TACGACCAAAAAGGGGCAACGTTTCAGGCAAGTGTGCGGTTGCTTGGCCC
AGGAAAGGGTGGGCAGCAGGGGTGAAAGAGGAGCGATGGGTCAAGTTGCC
TGACTGAGCATGTGCGCGAGGCGCAATGATCAAGCGTGAATATTGGAGTT
GTGATAGAGGAAGATTAGAAAAGAATTTTGGCAGCTATGTCATTGTATAA
TTGTAAATTTGTTGAGAACGGGCAACGAAAGTACAGTAAAAACTACGAAA
ATTGGCTCATGATGCA

Coding sequence (CDS) from alignment at CM002456.1:1219252..1222517-

>rna1114 ID=rna1114|Name=rna1114|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at CM002456.1:1219252..1222517- (Nannochloropsis gaditana)
ATGCTATCATCCTGGGAGCTGAAGCTTAAACCATCTCTATTCATGACACA
GGTGGGGGGTATGGTGGCACTGCGACCACCACAACCAGCTTTTCCCCCTG
TCTACGATGAAATAAACGTATGTCCTTTTGAACTCCCCCCTGCAAATGAC
CTAGATTACCCATTGCCAGAGACTTGCATTGCCAAGCGGCCTGCGGAGCC
CCGGGATGCCTCGTTGCTTTTGGTGTCAGATGCTTCGTCTCTATCTTCAA
CAGCAGACACTGTAGACACATGGGTCTTTGACGGGATATTTCGAGAGCTC
CCGTCCTTTTTGCCGGCCAAATCCCTTCTTGTCCTGAACCGGTCGCGAGT
GATTACTGCCCGTCTTCTCATGCGTAAAGAGGGAACGGGAGGGAAGGCCG
AGGTCTTATGCATCTCTCCCGTGTCACCCTCTTGGGATCCTGCAATCGCT
TTGACAGCCTTGTCGAACCGAAGTGTCTGGCGTTGTATGATCGGCGGAAG
GAACATAAAGGCAGGGAGCCGGCTTGTCCTAACCACAGAGAACGGTCTGT
GCTTGACGGGGCAGGTGGAGGCCCGCGAGGGGAAAGATGGCCTTGTCCGC
TTTTCTTGGACACACACTGCGCACGGTAAAGAGTCGCCCCCAACCTTTGG
GGACGTCCTGGAGGACGTGGGGAAGATTCCCTTGCCGCCCTACATGAACC
GTGCCTCGGACACGGCGGACCTCCAAGACTACCAGACTGTGTACGCGACT
GCCAGGGGCAGCGTGGCGGCCCCAACCGCTGGGTTGCATTTCACCCACTC
CCTTCTTCAACAGCTGCGGAACGGGCCTCAGCAAATCGAAACCTGCTACC
TGACCTTGCACGTGGGGGCGGGCACGTTCCAGCCTGTCACCGGGAAGGAA
GTGGGCGAGCATGCGATGCACTGGGAGCGAATCCAAGTCCCTATGGACGC
CTTAGAGACCCTCATCGAAGCAACTGGGAGTGGGCGACCCATGGTCCCGG
TAGGTACCACGTCCGTGCGCACGCTGGAAACGTTGTATTGGTGGGGCGTG
CGGCTCCTCTCTGCCCTTCCCTCCTCTTGCTCCGCCCAGCGACCTTCCAC
CCTGTTGTCCGAAGACAGCGTCACGAACCTGAGTTTGGGACAATGGGATG
CTTATCATTACGGAGCAAAATGGCCAACGCAAGCTTCCTCGTTGGTCCCT
GCCGTGCATGCCCTGGAGGCTTTGCGGGATCGAGCCAAGATGGAGGGCGT
GGACCACGTAGGAGGAGAGACGCAATTGATGATCGCCCCGGGCTATCGTT
TTGCGCTCTGCGATGGTTTGATCACGAATTTCCATCAGCCTCGATCGACT
TTGCTGTTGTTGGTTGGGGCTTTTCTGGGTGGATTGGGTCCTGTGCATCG
AATTTATCGGCACGCACTTTCCAAAGGATCGTACCGATTTCTAAGCTTCG
GTGATTCCAACCTGATGATCCCACCAGCACGAGTAATATTGCCCGTACGA
CCAAAAAGGGGCAACGTTTCAGGCAAGTGTGCGGTTGCTTGGCCCAGGAA
AGGGTGGGCAGCAGGGGTGAAAGAGGAGCGATGGGTCAAGTTGCCTGACT
GA

Synonyms

Publications