rna1111, rna1111 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1111
Unique Name	rna1111
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2889
Alignment location	CM002456.1:1211516..1213109 +

Link to JBrowse

Properties


Property Name	Value
Product	Mpv17/PMP22
Orig transcript id	gnl\|cribi\|Naga_100006g56.8631.mrna
Orig protein id	gnl\|cribi\|Naga_100006g56.8631
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1211516..1213109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g56	gene1070	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1111	rna1111-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29542.1	cds1110	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1211516..1213109+
coding sequence from alignment at CM002456.1:1211516..1213109+

mRNA sequence

>rna1111 ID=rna1111|Name=rna1111|organism=Nannochloropsis gaditana|type=mRNA|length=2889bp
ACGGCCCTCCTTCCATTGAAGACACGAGTAGTTTGTTTTACATGCACAAC
ACACAGCCCCGCCATTCACACAACCCGTGGATGAAGCGTGATCATCTTGA
GATATGAGAGCACATGGGGTGCCTAGTCTCAAGTATGCTGGATTCCTTCC
TCCCTGTCCACTTTTTTCTCATATGCTTCATCCCACATCTTACAGAGCAA
CTCTTAGCTTACTACTGCTCCTGTTGCCTGGGGTCTCACCCCTTCTTCCT
CCGTGCAACCATGTTGGAATACGACGATTCGGCGTTCTATTATTTCTGCA
TGACCATGCTTAGCTTCTACATGCTTCCAGGCACTTATTATCTAATATTT
AAGCAACTTCTTCCGTCGCTTATCCCCTCTACGGACTCGGATTTAGTCGC
GCGCACCGAAGTAGAACGCCGCAAGGCTAAGCAGTTAAAAGAAGAAGCAC
GGAGTAGCAATAACCTCAAATCCTGCGGCTTGGTGACAAACGCAGTGCTG
CTTGTTATGACCTACGGGTTGTTCGTCTTCCTCGTCCTGCGGGTCTGGAA
CGATGCGGAAATCGCCCAATTCGACCCGTACGCAATATTGGAAATAAGCA
CGGACGCGGAGGACCGTGCCATTCGTAAAGCCTACCGTTCGCTTTCCCTG
AAATGGCATCCGGACAAAAACATGGGGAACCAGTACGCCGAGCAGATGTT
CATGATGGTGCGGAAGGCCTACGAAGCCCTGACGGATGAGGTGGCGAAGG
AGAACTGGCAAAAATACGGCAATCCGGACGGGAAACAAGCTTTGGAAGTG
TCGATCGGCCTTCCCACCTTCCTCTTGGAAAAAGACAACCACACGACGAT
CCTTCTTGTGTATCTGGTCGTGCTGGTGATTGCCATCCCGCTGGCCGTGT
ACTGCTGGTACTCGGAGTCTCAACAATACGGAGAGAAGAATGTGATGCAC
CGAACCTACAACGATTATGCTGCCTTGCTCGCGGAAGCCACTCCTGCCCG
CTACCTTCCCTCCATCCTCGTCACCTCGAATGAGTGCGTCAAGGCCAACG
CCTCCTCCAAAGCTTCTGCCTCGCCTTCTCCTCCCCCAGCCTCCGCCGCG
GGTGCGGTAAACGGTTTCGCCGGCATGGACCCTGCGGAGGCCGAAGACCT
ACGCCGCCTAGTAACTGCCTTGGGTCCGACACGCTTGGTCAAGCCCAAGC
ACGAGAAACACCTCAAAGCGCTGGCGGAGGTGACCAAGGGCAACGTCCTT
CTCCATGCCTATCTCTACCGGCTCGACATTCCCCCCCGCTTTCGACCAAA
TTTGCGGAAGATGCTGCTACTCTCCGGGGACCTGATCGAGGCCATGCTTG
AAATCTTGCAGAAGACGCGGTGGCTGCAAACGGCGCTGGGTGTCCTCGAC
CTCCAACAGCAACTCACGCAAGCCATCATGGTACGGGAGCCGTCCGATGC
CCTTTACCAACTTCCCCACCTGACGGCCACGGAGGTGGGGCATATCACCA
AGGGCAAAGGCTCCGTGAAGTCTATTTCGGACTACTGCCGGCTGCCTGAC
GACCAGAAGAAGGGGCTCGCCACCATGACCGAGGGCGAGAAGACCGATGT
CTTGCAGGTGTGCAAGCTGCTGCCCCGGGTGGAGGTATCGACGGAGGTAG
GGGTGGAGGACGAGTCCGAGATCGCGGAGGGAGATTTGGTAACCGTCAAG
GTATCCGTCACCCGTGTGAATTTGCCGGAAGGGGCATCAGCGGGGGCGGT
GCACGCGCCATACTTCCCCGCGACGCGCAGAGAAGGATGGTGGGTCATAC
TCGCCCACGGTCAGAAAGTAATCATTGCCATGGAGCGGGTGGAGAATGAT
GCGCGCACGTTTACGCACGAGTTGAAAGTGTTCGGGCCCGGCATGCCCTT
GGAAGCGGGGCACTACAAGTTCGATTTGTACGTGAAAAGCGACTGCTATG
TGGGTCTGGACGTGGCGCAGAAGGTGGAGTTCGACGTGATCAAGGCCTCG
GAACTACCAGAGTACGTCCCACATAAGGATGATCTGGAGCTGGACAACGA
GCCAACGCTGTTTGAGTCCCTGGCGGGCAACCTGGAGGACGACTCGGACT
CGGATTTGGAGATGGAGGAGGAGGAGGAGGGGGAGGAAGGAGAGGGTCCA
AAGGATGGGGTAGCGAAGAAAGACGATTAATGAGGAAGAAATATACAGCT
GAAAGGGAAGGGGTGTTTGGGAAGCGTGGATGAAATCTTCGTGAGTGTGT
CGTTTGGTACGCGCGGAGGAACGGGTGAGTGCTGTTGAAATGATACCACG
GAACAGAACGGACGGACCAGGCGACAGCCAAGTGAGCACCAACATCGACA
ACAGCCGCGACAATAGAAACCGCAAATTAACCCAAGTTCTGACTTGAGGA
GACAGAAGCATTGTTTTTCCAGGCCTTTGAGCGCTCCATATCCCCTGTCC
ACCCGCTTCGTTCAGCTCGGGGGTCCGCTCGCAAACCCCCCCCCCCTCCC
CTAAGGTCTTTGTCAACATTTTCCTCAGACCATCAGCCTCCAACATACCA
ACCCTTTCAAACCGACGCCCCCTCAGCCCAGACCTGGGGGCGGGGGCAGC
ACAGCCTTGGTCGGTCCGTTCGAGGTCGAGGTGGACGTTCGTGGAGGGAA
GGTGACCTGAGGGGCATAAGGGTCCGTCCCGATCCTTTGTGTGTAGCCCG
CCGCAGTAGCAACCGCAGCCGCCACCTCGGACGCCAGCGCACCTGATGCA
GGGTTGAGCTCAGGCCTCGCACTTCGTCGTTGCCCAAATACGTGCCCGCA
GCATTCGCAGCAAGCCTCTTGATGGCCCATCCGCTCTGCCTCCACAGCAT
AGGAGCAGACCGGACAAAGGAGACCCGGCGTTTGGGATG

protein sequence of rna1111

>rna1111-protein ID=rna1111-protein|Name=rna1111|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLL
VPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTS
WLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALG
TFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAK
GEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAF
THVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGW
GVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVR
GK

mRNA from alignment at CM002456.1:1211516..1213109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1111 ID=rna1111|Name=rna1111|organism=Nannochloropsis gaditana|type=mRNA|length=1594bp|location=Sequence derived from alignment at CM002456.1:1211516..1213109+ (Nannochloropsis gaditana)
GCCCGTCCTTGTCCCAGGCCACACAGAGTAGCACCGggacttttttttct
ctaAAATTCATCgcaacctcttcctttttaaATGCCTGTCGATACAGGTG
GGGGGCACAGGGCGCGCGGTGGCTTTGCAGCGGAAGGCAGGTAGTCAGGA
AGGAGCTGCCTGACAAGAGCTGTTCTTACTCCCGCAGCACACATCATCAT
GGCCCCCGGGGTTTCAGGGAGAAAGTGCCCGTTGTTTCagcttcttgtcc
tccccaTGGCCTCATGCGTTGCCTTTGCAGGCCATTTGCCCTCATCGGCG
TTGCATACCAGCATGGGCGCGGCAGGGATGGCAAGATCGCCTTTGCTTGT
CCCCCATGGGATTGGGGTCGGGGGCCGATCGTGCCACAGCCTAGGTAGAA
GAGGCCCTGCTTTTTTGCCTTCGCAGTACAGACGAAACTATTTCAAAATG
CGTACATTAGGGCGGCAGGTAAGCGTGGAAGGTCAAGAGGAGCTGCGTGT
GATCAATGTAGTCTCATTTGTAACGCGCTGCGCGTCGTCATTCCACACGG
ACAGCAATCAAGCTCCCCACGCGGCTCCACCTCGTGGCTTACCCAGGGTG
GACTTGGCTTGgtacgcggaggagggggcggcggaggtaTCTTATCCGGC
GGCGATGGGTACGGCGGTAATGGAAACGGTGACAATGAGCACGGTGCCAG
CTCAGGATCCTTGCTGCTAATGGCAGCTCTTGGCACATTTAAAAGCTTGT
GGGGGCAGTATGCAGAGCTACTAGAAAGTAAGCCAGTTTTAACCAAGGCG
ATCACGGCGGGGCTGATTGCCCTGTTCGGCGACCTCCTGGCCCAAGTTTT
TGAGTATAAACTTACCTGCCGTCGCCTCgccaaaggggaggagccagCTC
CTTTCCACTTAAATTTCCTTCGGTGCTTGGCTGTAACAATAGAGGGCGTA
GTCATCACAGGTCCAGGCCTCCATTACTTGTACACGGCTTTGGAAAGCTG
GATGCCGGCGCAACGCGGCTTTCTGGCGGCCTTCACCCACGTCGCCGTGG
ACGAATTCATCTTCGAccccctctttgtcctttgtttcttcttcctctgc
ggGTTAATTGAAGGGAAGCATTTGAGCCGGGACATCTTCCCGCAAGTGCA
GCGGGAGTATTGGTCGGCGTTGAAGGGCGGATGGGGGGTATCCATTATGT
TCTTGCCTCTTGAATTCGCTACCTTCCGGTGCCTGCCCTTGCGCCTGCGG
GTGCTGGTGGTAAATCTGACGGACGTTGTATGGACGGCGGTTGTGTCGTT
TTTCGGACACCGGGAGCATGTGAGGGAAGTGCGGGGCAAgtgaggagacg
gagggaggggaggagggaggaagggaatgtATATGGGTCcgggccgccaa
ggcgcATGCATAGACGGAGATTCATAGTCTGATAGGCACGATCATGTAGG
ATTTGCGAGGGCCATGCTGATACGGCGGCTGAGGATGAGAAAGACAATGT
ACCAATTTATGAAGCTAATTGGCTTACGGCAGTGCCCTTTCTTTACTTTT
TCTTAACTCGAAGAATATCGAAAAGCAAATGACTGTGTCGACCA

Coding sequence (CDS) from alignment at CM002456.1:1211516..1213109+

>rna1111 ID=rna1111|Name=rna1111|organism=Nannochloropsis gaditana|type=CDS|length=2118bp|location=Sequence derived from alignment at CM002456.1:1211516..1213109+ (Nannochloropsis gaditana)
ATGGCCCCCGGGGTTTCAGGGAGAAAGTGCCCGTTGTTTCagcttcttgt
cctccccaTGGCCTCATGCGTTGCCTTTGCAGGCCATTTGCCCTCATCGG
CGTTGCATACCAGCATGGGCGCGGCAGGGATGGCAAGATCGCCTTTGCTT
GTCCCCCATGGGATTGGGGTCGGGGGCCGATCGTGCCACAGCCTAGGTAG
AAGAGGCCCTGCTTTTTTGCCTTCGCAGTACAGACGAAACTATTTCAAAA
TGCGTACATTAGGGCGGCAGCAATCAAGCTCCCCACGCGGCTCCACCTCG
TGGCTTACCCAGGGTGGACTTGGCTTGgtacgcggaggagggggcggcgg
aggtaTCTTATCCGGCGGCGATGGGTACGGCGGTAATGGAAACGGTGACA
ATGAGCACGGTGCCAGCTCAGGATCCTTGCTGCTAATGGCAGCTCTTGGC
ACATTTAAAAGCTTGTGGGGGCAGTATGCAGAGCTACTAGAAAGTAAGCC
AGTTTTAACCAAGGCGATCACGGCGGGGCTGATTGCCCTGTTCGGCGACC
TCCTGGCCCAAGTTTTTGAGTATAAACTTACCTGCCGTCGCCTCgccaaa
ggggaggagccagCTCCTTTCCACTTAAATTTCCTTCGGTGCTTGGCTGT
AACAATAGAGGGCGTAGTCATCACAGGTCCAGGCCTCCATTACTTGTACA
CGGCTTTGGAAAGCTGGATGCCGGCGCAACGCGGCTTTCTGGCGGCCTTC
ACCCACGTCGCCGTGGACGAATTCATCTTCGAccccctctttgtcctttg
tttcttcttcctctgcggGTTAATTGAAGGGAAGCATTTGAGCCGGGACA
TCTTCCCGCAAGTGCAGCGGGAGTATTGGTCGGCGTTGAAGGGCGGATGG
GGGGTATCCATTATGTTCTTGCCTCTTGAATTCGCTACCTTCCGGTGCCT
GCCCTTGCGCCTGCGGGTGCTGGTGGTAAATCTGACGGACGTTGTATGGA
CGGCGGTTGTGTCGTTTTTCGGACACCGGGAGCATGTGAGGGAAGTGCGG
GGCAAgtgaATGGCCCCCGGGGTTTCAGGGAGAAAGTGCCCGTTGTTTCa
gcttcttgtcctccccaTGGCCTCATGCGTTGCCTTTGCAGGCCATTTGC
CCTCATCGGCGTTGCATACCAGCATGGGCGCGGCAGGGATGGCAAGATCG
CCTTTGCTTGTCCCCCATGGGATTGGGGTCGGGGGCCGATCGTGCCACAG
CCTAGGTAGAAGAGGCCCTGCTTTTTTGCCTTCGCAGTACAGACGAAACT
ATTTCAAAATGCGTACATTAGGGCGGCAGCAATCAAGCTCCCCACGCGGC
TCCACCTCGTGGCTTACCCAGGGTGGACTTGGCTTGgtacgcggaggagg
gggcggcggaggtaTCTTATCCGGCGGCGATGGGTACGGCGGTAATGGAA
ACGGTGACAATGAGCACGGTGCCAGCTCAGGATCCTTGCTGCTAATGGCA
GCTCTTGGCACATTTAAAAGCTTGTGGGGGCAGTATGCAGAGCTACTAGA
AAGTAAGCCAGTTTTAACCAAGGCGATCACGGCGGGGCTGATTGCCCTGT
TCGGCGACCTCCTGGCCCAAGTTTTTGAGTATAAACTTACCTGCCGTCGC
CTCgccaaaggggaggagccagCTCCTTTCCACTTAAATTTCCTTCGGTG
CTTGGCTGTAACAATAGAGGGCGTAGTCATCACAGGTCCAGGCCTCCATT
ACTTGTACACGGCTTTGGAAAGCTGGATGCCGGCGCAACGCGGCTTTCTG
GCGGCCTTCACCCACGTCGCCGTGGACGAATTCATCTTCGAccccctctt
tgtcctttgtttcttcttcctctgcggGTTAATTGAAGGGAAGCATTTGA
GCCGGGACATCTTCCCGCAAGTGCAGCGGGAGTATTGGTCGGCGTTGAAG
GGCGGATGGGGGGTATCCATTATGTTCTTGCCTCTTGAATTCGCTACCTT
CCGGTGCCTGCCCTTGCGCCTGCGGGTGCTGGTGGTAAATCTGACGGACG
TTGTATGGACGGCGGTTGTGTCGTTTTTCGGACACCGGGAGCATGTGAGG
GAAGTGCGGGGCAAgtga

Synonyms

Publications