EWM29542.1, cds1110 (CDS) Nannochloropsis gaditana

Overview
NameEWM29542.1
Unique Namecds1110
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1211714..1211983 +
Alignment locationCM002456.1:1212070..1212858 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29542.1
ProductMpv17/PMP22
Orig transcript idgnl|cribi|Naga_100006g56.8631.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1211714..1211983 +
CM002456.1supercontigCM002456.1:1212070..1212858 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|585112113|gb|EWM29542.1| (Mpv17/PMP22 [Nannochloropsis gaditana])

HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query:    1 MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLLVPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTSWLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVRGK 352
            MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLLVPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTSWLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVRGK
Sbjct:    1 MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLLVPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTSWLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVRGK 352          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|299116983|emb|CBN75087.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 180.259 bits (456), Expect = 9.059e-50
Identity = 91/213 (42.72%), Postives = 133/213 (62.44%), Query Frame = 0
Query:  132 GDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRG-FLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 343
            G+ +  AS G  + ++A+      WG YA  L   P++ KA+T+G++ L GD+ AQ FE++       +G    PF  N  R  AV I+ ++ITGP LH LY  LE  +P   G F+ A  HV +D F+FDP+FV  FF + G++E + L + I P ++RE+W A++G W VS++F PL+FATFR LPL  RVL VN  D+ WT+V+S+F H+
Sbjct:  168 GEPKKSASFGPWVWLSAM------WGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRG----PFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 370          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|299472361|emb|CBN77549.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.094 bits (305), Expect = 7.640e-30
Identity = 76/193 (39.38%), Postives = 102/193 (52.85%), Query Frame = 0
Query:  160 AELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFL--RCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREY-----WSALKG-GWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
            A  L++ PVLTK+I++G I L GD+LAQ  EY         G    P+    +  R  AV I+G++I GP LHY Y  LES MPA    LAA T V VD  + DP+F   F +  GLIEG+ +  +I P +   Y     W  + G GW       P++   F   P++ RVL  +L D+VWT V S F H +
Sbjct:    7 ASALDAYPVLTKSISSGFIGLLGDVLAQWVEYLF-------GAAFPPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWA------PIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSHVK 186          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|1130835801|dbj|GAV82175.1| (Mpv17_PMP22 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 108.997 bits (271), Expect = 9.362e-24
Identity = 67/193 (34.72%), Postives = 104/193 (53.89%), Query Frame = 0
Query:  154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
            SL   Y   LE  PVLTKA+T+ L+ L GDL+ Q          L   + P+   L+  R    T+ G+V+ GP LH  YLY +    MP   G   AF  + +D+F+F P+F+  F      +EGK     + P++Q+E++SA+   W    +++P +F  FR +P +L+VL  N+  +VW  ++SF  H+E
Sbjct:  122 SLLSWYLARLEKYPVLTKAVTSALLTLIGDLICQ----------LVIDQVPS---LDLKRTFQFTLLGLVLVGPTLHFWYLYLSKLVTMPGASG---AFLRLILDQFLFSPMFIGIFLSTLMTLEGK--PSQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQLQVLAANVVALVWNVILSFKAHKE 293          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|1063507058|ref|XP_007028215.2| (PREDICTED: PXMP2/4 family protein 3 [Theobroma cacao])

HSP 1 Score: 107.842 bits (268), Expect = 4.554e-23
Identity = 72/226 (31.86%), Postives = 112/226 (49.56%), Query Frame = 0
Query:  121 SGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESW--MPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
            SGG G G +GNG    G +  SLL              Y  LL   PV TKA+T+ L+   GDL+ Q          LA    P+   L+  R    T+ G+V+ GP LH+ Y  L +   +P   G   AF  + +D+F+F P+F+  F      +EG+     + P++Q+E++SA+   W    +++P +F  FR +P + +VL  N   +VW  ++SF  H+E
Sbjct:  141 SGGKGEGADGNG----GRNDWSLL------------SWYLALLAKYPVFTKAVTSALLTFIGDLICQ----------LAIDHVPS---LDVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASG---AFLRLLLDQFLFSPIFIGVFLSTLVTLEGR--PSQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKE 329          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|508716820|gb|EOY08717.1| (Peroxisomal membrane 22 kDa family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 107.842 bits (268), Expect = 4.694e-23
Identity = 72/226 (31.86%), Postives = 112/226 (49.56%), Query Frame = 0
Query:  121 SGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESW--MPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
            SGG G G +GNG    G +  SLL              Y  LL   PV TKA+T+ L+   GDL+ Q          LA    P+   L+  R    T+ G+V+ GP LH+ Y  L +   +P   G   AF  + +D+F+F P+F+  F      +EG+     + P++Q+E++SA+   W    +++P +F  FR +P + +VL  N   +VW  ++SF  H+E
Sbjct:  141 SGGKGEGADGNG----GRNDWSLL------------SWYLALLAKYPVFTKAVTSALLTFIGDLICQ----------LAIDHVPS---LDVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASG---AFLRLLLDQFLFSPIFIGVFLSTLVTLEGR--PSQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKE 329          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|743894903|ref|XP_011040711.1| (PREDICTED: protein sym-1 [Populus euphratica] >gi|743894905|ref|XP_011040712.1| PREDICTED: protein sym-1 [Populus euphratica] >gi|743894907|ref|XP_011040713.1| PREDICTED: protein sym-1 [Populus euphratica] >gi|743894909|ref|XP_011040714.1| PREDICTED: protein sym-1 [Populus euphratica])

HSP 1 Score: 105.145 bits (261), Expect = 2.880e-22
Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 0
Query:  159 YAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
            Y  LL   PVLTKA+T+ ++ L GDL+ Q          L   + P+   L+  R    T  G+V+ GP LH  YLY +    +P   G   AF  + VD+F+F P+F+  F      +EG+    ++ P++Q+E++SA+   W    +++P +F  FR +P + +VL  N+  +VW  ++SF  H+E
Sbjct:  129 YLNLLAKYPVLTKAVTSAILTLMGDLICQ----------LVIDQAPS---LDLKRTFVFTFLGLVLVGPTLHFWYLYLSKLVTLPGASG---AFLRLLVDQFVFSPIFIGVFLSTLVTLEGR--PSEVLPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKE 295          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|566174212|ref|XP_002308859.2| (hypothetical protein POPTR_0006s03100g [Populus trichocarpa] >gi|550335347|gb|EEE92382.2| hypothetical protein POPTR_0006s03100g [Populus trichocarpa])

HSP 1 Score: 104.375 bits (259), Expect = 4.188e-22
Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 0
Query:  159 YAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
            Y  LL   PVLTKA+T+ ++ L GDL+ Q          L   + P+   L+  R    T  G+V+ GP LH  YLY +    +P   G   AF  + VD+F+F P+F+  F      +EG+    ++ P++Q+E++SA+   W    +++P +F  FR +P + +VL  N+  +VW  ++SF  H+E
Sbjct:  129 YLNLLAKYPVLTKAVTSAILTLMGDLICQ----------LVIDQAPS---LDLKRTFVFTFLGLVLVGPTLHFWYLYLSKLVTLPGASG---AFLRLLVDQFVFSPIFIGVFLSTLVTLEGR--PSEVLPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKE 295          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|658000134|ref|XP_008392512.1| (PREDICTED: protein sym-1 [Malus domestica])

HSP 1 Score: 104.375 bits (259), Expect = 5.853e-22
Identity = 64/197 (32.49%), Postives = 104/197 (52.79%), Query Frame = 0
Query:  154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVRE 348
            SL   Y +LL   PV TKA+T+ L+ L GD++ Q+   K            AP+ L+  R    T+ G+V+ GP LH  YLY +    MP   G   AF  + +D+F+F P+F+  F      +EGK     + P++Q+E++SA+   W    +++P +F  FR +P + +VL  N   + W  ++SF  H+E ++ 
Sbjct:  131 SLLSWYLDLLAKYPVATKALTSALLTLTGDIVCQLVIDK------------APY-LDLKRTFLFTLLGLVLVGPTLHFWYLYLSKLVTMPGASG---AFLRLVLDQFLFAPIFIGVFLSTLMTLEGKR--SQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLTANFISLTWNVILSFKAHKEVLQN 306          
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|1032276706|gb|OAO91034.1| (hypothetical protein AXX17_AT5G19670 [Arabidopsis thaliana])

HSP 1 Score: 103.605 bits (257), Expect = 7.463e-22
Identity = 63/196 (32.14%), Postives = 101/196 (51.53%), Query Frame = 0
Query:  153 KSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVRE 348
            +SL   Y  LL + PVLTKA+TA L+ L GDL+ Q     LT  + +  ++         R L  T  G+ + GP LH+ Y  L   + A  G   A   + +D+F+F P+FV  F      +EGK    ++ P++Q+E+  A+   W    +++P +F  FR +P   +VL  N+  + W  ++SF  H+E V +
Sbjct:  113 RSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQ-----LTINKTSSLDKK--------RTLTFTFLGLGLVGPTLHFWYLYLSKVVTAS-GLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGK--PSNVIPKLQQEWTGAMIANWQ---LWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK 289          
The following BLAST results are available for this feature:
BLAST of EWM29542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112113|gb|EWM29542.1|0.000e+0100.00Mpv17/PMP22 [Nannochloropsis gaditana][more]
gi|299116983|emb|CBN75087.1|9.059e-5042.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|299472361|emb|CBN77549.1|7.640e-3039.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|1130835801|dbj|GAV82175.1|9.362e-2434.72Mpv17_PMP22 domain-containing protein [Cephalotus ... [more]
gi|1063507058|ref|XP_007028215.2|4.554e-2331.86PREDICTED: PXMP2/4 family protein 3 [Theobroma cac... [more]
gi|508716820|gb|EOY08717.1|4.694e-2331.86Peroxisomal membrane 22 kDa family protein isoform... [more]
gi|743894903|ref|XP_011040711.1|2.880e-2232.98PREDICTED: protein sym-1 [Populus euphratica] >gi|... [more]
gi|566174212|ref|XP_002308859.2|4.188e-2232.98hypothetical protein POPTR_0006s03100g [Populus tr... [more]
gi|658000134|ref|XP_008392512.1|5.853e-2232.49PREDICTED: protein sym-1 [Malus domestica][more]
gi|1032276706|gb|OAO91034.1|7.463e-2232.14hypothetical protein AXX17_AT5G19670 [Arabidopsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1111rna1111Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications