EWM29542.1, cds1110 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|585112113|gb|EWM29542.1| (Mpv17/PMP22 [Nannochloropsis gaditana]) HSP 1 Score: 709.523 bits (1830), Expect = 0.000e+0 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query: 1 MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLLVPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTSWLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVRGK 352
MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLLVPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTSWLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVRGK
Sbjct: 1 MAPGVSGRKCPLFQLLVLPMASCVAFAGHLPSSALHTSMGAAGMARSPLLVPHGIGVGGRSCHSLGRRGPAFLPSQYRRNYFKMRTLGRQQSSSPRGSTSWLTQGGLGLVRGGGGGGGILSGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVREVRGK 352
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|299116983|emb|CBN75087.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 180.259 bits (456), Expect = 9.059e-50 Identity = 91/213 (42.72%), Postives = 133/213 (62.44%), Query Frame = 0
Query: 132 GDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRG-FLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHR 343
G+ + AS G + ++A+ WG YA L P++ KA+T+G++ L GD+ AQ FE++ +G PF N R AV I+ ++ITGP LH LY LE +P G F+ A HV +D F+FDP+FV FF + G++E + L + I P ++RE+W A++G W VS++F PL+FATFR LPL RVL VN D+ WT+V+S+F H+
Sbjct: 168 GEPKKSASFGPWVWLSAM------WGMYAAWLRRSPLVAKAVTSGVLGLSGDMAAQFFEFQQKAESGRRG----PFLKNNRRLTAVAIDSILITGPALHALYGLLECLIPTVGGGFVPAALHVVIDTFVFDPMFVASFFCVTGMLESRPLRKSILPALRREFWPAVQGSWLVSLLFCPLQFATFRYLPLEFRVLSVNACDIAWTSVMSYFSHK 370
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|299472361|emb|CBN77549.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 122.094 bits (305), Expect = 7.640e-30 Identity = 76/193 (39.38%), Postives = 102/193 (52.85%), Query Frame = 0
Query: 160 AELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFL--RCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREY-----WSALKG-GWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
A L++ PVLTK+I++G I L GD+LAQ EY G P+ + R AV I+G++I GP LHY Y LES MPA LAA T V VD + DP+F F + GLIEG+ + +I P + Y W + G GW P++ F P++ RVL +L D+VWT V S F H +
Sbjct: 7 ASALDAYPVLTKSISSGFIGLLGDVLAQWVEYLF-------GAAFPPWKTTAMVWRSCAVMIDGLLINGPLLHYAYEMLESRMPAGDSILAAMTQVCVDVLVIDPVFAFMFVWSTGLIEGRSVRGEILPTIVHHYPTLVLWLIVIGVGWA------PIQIYLFNRYPVQYRVLTADLIDLVWTCVSSLFSHVK 186
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|1130835801|dbj|GAV82175.1| (Mpv17_PMP22 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 108.997 bits (271), Expect = 9.362e-24 Identity = 67/193 (34.72%), Postives = 104/193 (53.89%), Query Frame = 0
Query: 154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
SL Y LE PVLTKA+T+ L+ L GDL+ Q L + P+ L+ R T+ G+V+ GP LH YLY + MP G AF + +D+F+F P+F+ F +EGK + P++Q+E++SA+ W +++P +F FR +P +L+VL N+ +VW ++SF H+E
Sbjct: 122 SLLSWYLARLEKYPVLTKAVTSALLTLIGDLICQ----------LVIDQVPS---LDLKRTFQFTLLGLVLVGPTLHFWYLYLSKLVTMPGASG---AFLRLILDQFLFSPMFIGIFLSTLMTLEGK--PSQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQLQVLAANVVALVWNVILSFKAHKE 293
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|1063507058|ref|XP_007028215.2| (PREDICTED: PXMP2/4 family protein 3 [Theobroma cacao]) HSP 1 Score: 107.842 bits (268), Expect = 4.554e-23 Identity = 72/226 (31.86%), Postives = 112/226 (49.56%), Query Frame = 0
Query: 121 SGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESW--MPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
SGG G G +GNG G + SLL Y LL PV TKA+T+ L+ GDL+ Q LA P+ L+ R T+ G+V+ GP LH+ Y L + +P G AF + +D+F+F P+F+ F +EG+ + P++Q+E++SA+ W +++P +F FR +P + +VL N +VW ++SF H+E
Sbjct: 141 SGGKGEGADGNG----GRNDWSLL------------SWYLALLAKYPVFTKAVTSALLTFIGDLICQ----------LAIDHVPS---LDVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASG---AFLRLLLDQFLFSPIFIGVFLSTLVTLEGR--PSQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKE 329
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|508716820|gb|EOY08717.1| (Peroxisomal membrane 22 kDa family protein isoform 2 [Theobroma cacao]) HSP 1 Score: 107.842 bits (268), Expect = 4.694e-23 Identity = 72/226 (31.86%), Postives = 112/226 (49.56%), Query Frame = 0
Query: 121 SGGDGYGGNGNGDNEHGASSGSLLLMAALGTFKSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESW--MPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
SGG G G +GNG G + SLL Y LL PV TKA+T+ L+ GDL+ Q LA P+ L+ R T+ G+V+ GP LH+ Y L + +P G AF + +D+F+F P+F+ F +EG+ + P++Q+E++SA+ W +++P +F FR +P + +VL N +VW ++SF H+E
Sbjct: 141 SGGKGEGADGNG----GRNDWSLL------------SWYLALLAKYPVFTKAVTSALLTFIGDLICQ----------LAIDHVPS---LDVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASG---AFLRLLLDQFLFSPIFIGVFLSTLVTLEGR--PSQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKE 329
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|743894903|ref|XP_011040711.1| (PREDICTED: protein sym-1 [Populus euphratica] >gi|743894905|ref|XP_011040712.1| PREDICTED: protein sym-1 [Populus euphratica] >gi|743894907|ref|XP_011040713.1| PREDICTED: protein sym-1 [Populus euphratica] >gi|743894909|ref|XP_011040714.1| PREDICTED: protein sym-1 [Populus euphratica]) HSP 1 Score: 105.145 bits (261), Expect = 2.880e-22 Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 0
Query: 159 YAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
Y LL PVLTKA+T+ ++ L GDL+ Q L + P+ L+ R T G+V+ GP LH YLY + +P G AF + VD+F+F P+F+ F +EG+ ++ P++Q+E++SA+ W +++P +F FR +P + +VL N+ +VW ++SF H+E
Sbjct: 129 YLNLLAKYPVLTKAVTSAILTLMGDLICQ----------LVIDQAPS---LDLKRTFVFTFLGLVLVGPTLHFWYLYLSKLVTLPGASG---AFLRLLVDQFVFSPIFIGVFLSTLVTLEGR--PSEVLPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKE 295
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|566174212|ref|XP_002308859.2| (hypothetical protein POPTR_0006s03100g [Populus trichocarpa] >gi|550335347|gb|EEE92382.2| hypothetical protein POPTR_0006s03100g [Populus trichocarpa]) HSP 1 Score: 104.375 bits (259), Expect = 4.188e-22 Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 0
Query: 159 YAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHRE 344
Y LL PVLTKA+T+ ++ L GDL+ Q L + P+ L+ R T G+V+ GP LH YLY + +P G AF + VD+F+F P+F+ F +EG+ ++ P++Q+E++SA+ W +++P +F FR +P + +VL N+ +VW ++SF H+E
Sbjct: 129 YLNLLAKYPVLTKAVTSAILTLMGDLICQ----------LVIDQAPS---LDLKRTFVFTFLGLVLVGPTLHFWYLYLSKLVTLPGASG---AFLRLLVDQFVFSPIFIGVFLSTLVTLEGR--PSEVLPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKE 295
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|658000134|ref|XP_008392512.1| (PREDICTED: protein sym-1 [Malus domestica]) HSP 1 Score: 104.375 bits (259), Expect = 5.853e-22 Identity = 64/197 (32.49%), Postives = 104/197 (52.79%), Query Frame = 0
Query: 154 SLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLH--YLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVRE 348
SL Y +LL PV TKA+T+ L+ L GD++ Q+ K AP+ L+ R T+ G+V+ GP LH YLY + MP G AF + +D+F+F P+F+ F +EGK + P++Q+E++SA+ W +++P +F FR +P + +VL N + W ++SF H+E ++
Sbjct: 131 SLLSWYLDLLAKYPVATKALTSALLTLTGDIVCQLVIDK------------APY-LDLKRTFLFTLLGLVLVGPTLHFWYLYLSKLVTMPGASG---AFLRLVLDQFLFAPIFIGVFLSTLMTLEGKR--SQVVPKLQQEWFSAVLANWQ---LWIPFQFLNFRFVPQQFQVLTANFISLTWNVILSFKAHKEVLQN 306
BLAST of EWM29542.1 vs. NCBI_GenBank
Match: gi|1032276706|gb|OAO91034.1| (hypothetical protein AXX17_AT5G19670 [Arabidopsis thaliana]) HSP 1 Score: 103.605 bits (257), Expect = 7.463e-22 Identity = 63/196 (32.14%), Postives = 101/196 (51.53%), Query Frame = 0
Query: 153 KSLWGQYAELLESKPVLTKAITAGLIALFGDLLAQVFEYKLTCRRLAKGEEPAPFHLNFLRCLAVTIEGVVITGPGLHYLYTALESWMPAQRGFLAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKHLSRDIFPQVQREYWSALKGGWGVSIMFLPLEFATFRCLPLRLRVLVVNLTDVVWTAVVSFFGHREHVRE 348
+SL Y LL + PVLTKA+TA L+ L GDL+ Q LT + + ++ R L T G+ + GP LH+ Y L + A G A + +D+F+F P+FV F +EGK ++ P++Q+E+ A+ W +++P +F FR +P +VL N+ + W ++SF H+E V +
Sbjct: 113 RSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQ-----LTINKTSSLDKK--------RTLTFTFLGLGLVGPTLHFWYLYLSKVVTAS-GLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGK--PSNVIPKLQQEWTGAMIANWQ---LWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK 289 The following BLAST results are available for this feature:
BLAST of EWM29542.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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