|
|
Properties
| Property Name | Value |
|---|
| Product | Proteasome, subunit alpha/beta |
| Orig transcript id | gnl|cribi|Naga_100006g59.8611.mrna |
| Orig protein id | gnl|cribi|Naga_100006g59.8611 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1202930..1205766 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1108 ID=rna1108|Name=rna1108|organism=Nannochloropsis gaditana|type=mRNA|length=1812bp
TTTGTACTAGTATGGGTCTGTCGAGACCGACTCGGAGTAGCACAGGGCGT
CAGTCGCTCACGCTTTAGGTAAACTTAGTTGTTGTTCCATGAGTGTTCGA
CCCGAGGCAGGGGCACACACGTAGCCTCTCACACTTGAACTGTAAGTCAG
ATTTTTAACGAAAAGGGGTTGTGACTCATTTACCTTTAACACACAAAAAA
CTAAGGCCATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTAC
CCCCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCAT
ATTGCTGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAA
GTGCCTTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGA
CGCGTTGGCACAAGCGCTCAGTTACTGGTGGGAGGAGAATGGAACGACTA
TGAAGATGAAAAAGAGGGAAACGTCAAAGGAAGTCAGCGTATTCTAAAGG
TGAACGGCCGCCTTCTGCTTGGCATGGTGGGGTACGACGCGATGGCAGGC
GCCTTCTTTGACATGCTGCGGGCGGAATTACACTTGCGAAGTATGCGTCT
CGAACAGCATGCATTGGGGGAATGCGCCACCACCATCACGCCCAAGGCCC
TCTCGCTCCTCGTCTCCCACATGCTGTATTACCGCTTCCGCGGGAGTGGG
ACCGCGCCTATCGTAGCCGGCCTCGAAGCGGATGGCACGCCGGTGTTGTG
CACGCAGGACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTTTGTTGCCT
TGGGCTCCTCCTCCAAAGCCGTACTCGGCGCATGTGAGGCCTTGTATCGA
CCCAACCTGGAAGGCGATGCGCTCCTCCAATTGGCTTGCCGGTGTCTGCG
TGCAGGGCTCGAGCGTGACTGTGCCAGCGGGTACGGATTGGTTGCCTACT
TGATAACACCGGAGGGGATGGCGCGGACGTGTGTCCAAGGGCGAATGGAT
TAATAGGGCTGCTGATTGTAAATTCTGATTTGTTGAAGCAAAGCATCCAC
ACACTGTAATGAAGCAAGCACGCTTAAAAATTTAATAACGAGGAAAAAAT
TAAAGGTTAATTGTGCTTATTTGGACTTCTATAAGCATGATGAAAGCGCA
AAATGTAGCATCCTATGCTCACAATCGTGTACGTGAAGAGGCGCAGGAGG
CATTTTCGAGGTGGATAGGGTATAGGTGGAAAAGCAAACTCGATGCGATA
AGAATATAGCGCAACTTCACTTCGATGCACGACAACTCCTTGTAGTTACA
AGTGTAACAGCATTGACGACACAGTTGTAGAAAAAGTGTCTCGATGCCAT
CCCATCATCTTCAGGGGTCTTCCATGCACGAGGGGCCAGCCGTTCTTTCA
GTTAACGTTGACAACAAACGTCTCTTGCACGTCCCTTACTGTTGGATTCA
GCACATAAAAAATCCAGATATTGGTATCCAAATTGTTGTGGCTCTGCCTG
CCTGAGCATGGGGTCGCACCTTTTCTTGTCTCTCAGGCGCGGGCTTTCAG
TGGTCGTGATTAAGGGCAATGAAAATCGCAACCTGACGCAAGGCACATAC
ATATATCATGGGAAGACGAGCGAAAATTTATTCAATAAAACTGGGGGGGG
AAATAAAATCCTAGTCCTCGTCACACAATCTAAACCACACAGCCTCCTTT
GGTGGGCTGGCTGGCTTCGGGTCTTTATTTCTTTCCCACGCACTGGTGGT
TTTTGTCGTAATCAGCGTGCCCTGCTTTCGGTGTCCGGTCAGGTCGCCAT
ATTTTCCATTCT back to topprotein sequence of rna1108 >rna1108-protein ID=rna1108-protein|Name=rna1108|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSAL
ALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNG
RLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSL
LVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLH
VWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR back to topmRNA from alignment at CM002456.1:1202930..1205766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1108 ID=rna1108|Name=rna1108|organism=Nannochloropsis gaditana|type=mRNA|length=2837bp|location=Sequence derived from alignment at CM002456.1:1202930..1205766- (Nannochloropsis gaditana)
TTTGTACTAGTATGGGTCTGTCGAGACCGACTCGGAGTAGCACAGGGCGT
CAGTCGCTCACGCTTTAGGTAAACTTAGTTGTTGTTCCATGAGTGTTCGA
CCCGAGGCAGGGGCACACACGTAGCCTCTCACACTTGAACTGTAAGTCAG
ATTTTTAACGAAAAGGGGTTGTGACTCATTTACCTTTAACACACAAAAAA
CTAAGGCCATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTAC
CCCCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCAT
ATTGCTGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAA
GTGCCTTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGA
CGCGTTGGCACAAGGTGAGAATTGAGGTCGGCAGACAGGGCCTAAGAAAA
AGGCAAGGCGTGAGACTCTAATTGCGAAAGTACACCCTTTCGCTCAATTT
CGTGCTTATGTGGAACATCTGGCCGTCTGTATGCCTAGAGAAGGCAAAGA
AATGCGTCTTTGCTTACAGAACAAATGAATTAAGCCTCTGGAGTCCTGAA
GTTTGAGTGAAGAGTCTCACTTCACATCCCTTCTCTCTTGCAGCGCTCAG
TTACTGGTGGGAGGAGAATGGAACGACTATGAAGATGAAAAAGAGGGAAA
CGTCAAAGGAAGTCAGCGTATTCTAAAGGTATGGCTTGCGGGCCGTTTCC
AAAAGGGCAGGGCGCAAGGATTGATCGGACTCTCCTCGTCATGACATGAC
TACATAGCAAACGAGCCCTTGCTCGGTCGCAAAAGAGCTCATCTGGAAAT
GGGCTTTTCTGTACGCAGGTGAACGGCCGCCTTCTGCTTGGCATGGTGGG
GTACGACGCGATGGCAGGCGCCTTCTTTGACATGCTGCGGGCGGAATTAC
ACTTGCGAAGTATGCGTCTCGAACAGCATGTATGTCGTGGGACGCTTACA
TGGCTCCCCGTGACGATAGTTTGATTTGAAGTCTCGAACATGGCGGGCTT
GCCCGTGGATGTGAGGGGGGCGGCCTCAACTGTCTCGCCTCGCGAAAACG
TCGAAGCTAGGCCTTCCCGTTCCCTCTCGACTTCCTCCCCCTTGTCAACA
TGCCTCCTTTCCTTTCGTTCCACTTGTGTTCTTGGCAGGCATTGGGGGAA
TGCGCCACCACCATCACGCCCAAGGCCCTCTCGCTCCTCGTCTCCCACAT
GCTGTATTACCGCTTCCGCGGGAGTGGGACCGCGCCTATCGTAGCCGGCC
TCGAAGCGGATGGCACGCCGGTGTTGTGCACGCAGGGTGAGGGAGAGGCG
GTCGTGGTCGCGTTGGTATGGGTGGGGGATTTGCATGTATGGTCCCCAGG
GTGTTTTTTTAGTTGGGTGGACGGTTCAGGAGAAGGAATGGTAATGAGGA
GTGAAAGCGAGGAAGCTTCTTTGCCTTTTGCCTGGGACCTCGCTCGTGGT
ATTGGCGTCGGGTGTCATAGTTGGCACAGGCGTCGATAATTTGCCCCGCC
CCGTAACCCTTGCAGAAGCCAGCCGACGTAGAACTCGCCTTCCTCTTTCC
TCCTCATTCTTGCCAGACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTT
TGTTGCCTTGGGCTCCTCCTCCAAAGCCGTACTCGGCGCATGTGAGGTAA
GCTTACAGCTAGGGGTGCGTACCCGCTGGTACGGCGGATGCCCTCTGGAA
AAATGTCACGGCACGCGTGGCTCTGCCGGCCATGATTGTCTTGCAGTTGG
AGCGTTACTTATTGTCTGAAACATTCACGTCACCACACTGCCGCCTGGCC
TTCTGCTCCACAGGCCTTGTATCGACCCAACCTGGAAGGCGATGCGCTCC
TCCAATTGGCTTGCCGGTGTCTGCGTGCAGGGCTCGAGCGTGACTGTGCC
AGCGGGTACGGATTGGTTGCCTACTTGATAACACCGGAGGGGATGGCGCG
GACGTGTGTCCAAGGGCGAATGGATTAATAGGGCTGCTGATTGTAAATTC
TGATTTGTTGAAGCAAAGCATCCACACACTGTAATGAAGCAAGCACGCTT
AAAAATTTAATAACGAGGAAAAAATTAAAGGTTAATTGTGCTTATTTGGA
CTTCTATAAGCATGATGAAAGCGCAAAATGTAGCATCCTATGCTCACAAT
CGTGTACGTGAAGAGGCGCAGGAGGCATTTTCGAGGTGGATAGGGTATAG
GTGGAAAAGCAAACTCGATGCGATAAGAATATAGCGCAACTTCACTTCGA
TGCACGACAACTCCTTGTAGTTACAAGTGTAACAGCATTGACGACACAGT
TGTAGAAAAAGTGTCTCGATGCCATCCCATCATCTTCAGGGGTCTTCCAT
GCACGAGGGGCCAGCCGTTCTTTCAGTTAACGTTGACAACAAACGTCTCT
TGCACGTCCCTTACTGTTGGATTCAGCACATAAAAAATCCAGATATTGGT
ATCCAAATTGTTGTGGCTCTGCCTGCCTGAGCATGGGGTCGCACCTTTTC
TTGTCTCTCAGGCGCGGGCTTTCAGTGGTCGTGATTAAGGGCAATGAAAA
TCGCAACCTGACGCAAGGCACATACATATATCATGGGAAGACGAGCGAAA
ATTTATTCAATAAAACTGGGGGGGGAAATAAAATCCTAGTCCTCGTCACA
CAATCTAAACCACACAGCCTCCTTTGGTGGGCTGGCTGGCTTCGGGTCTT
TATTTCTTTCCCACGCACTGGTGGTTTTTGTCGTAATCAGCGTGCCCTGC
TTTCGGTGTCCGGTCAGGTCGCCATATTTTCCATTCT back to topCoding sequence (CDS) from alignment at CM002456.1:1202930..1205766- >rna1108 ID=rna1108|Name=rna1108|organism=Nannochloropsis gaditana|type=CDS|length=3012bp|location=Sequence derived from alignment at CM002456.1:1202930..1205766- (Nannochloropsis gaditana)
GCATTGGGGGAATGCGCCACCACCATCACGCCCAAGGCCCTCTCGCTCCT
CGTCTCCCACATGCTGTATTACCGCTTCCGCGGGAGTGGGACCGCGCCTA
TCGTAGCCGGCCTCGAAGCGGATGGCACGCCGGTGTTGTGCACGCAGGGT
GAGGGAGAGGCGGTCGTGGTCGCGTTGGTATGGGTGGGGGATTTGCATGT
ATGGTCCCCAGGGTGTTTTTTTAGTTGGGTGGACGGTTCAGGAGAAGGAA
TGGTAATGAGGAGTGAAAGCGAGGAAGCTTCTTTGCCTTTTGCCTGGGAC
CTCGCTCGTGGTATTGGCGTCGGGTGTCATAGTTGGCACAGGCGTCGATA
AGTGAACGGCCGCCTTCTGCTTGGCATGGTGGGGTACGACGCGATGGCAG
GCGCCTTCTTTGACATGCTGCGGGCGGAATTACACTTGCGAAGTATGCGT
CTCGAACAGCATCGCTCAGTTACTGGTGGGAGGAGAATGGAACGACTATG
AAGATGAAAAAGAGGGAAACGTCAAAGGAAGTCAGCGTATTCTAAAGATG
AAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTACCCCCTTGCTCG
CCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCATATTGCTGTGGA
GACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAAGTGCCTTGGCA
CTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGACGCGTTGGCAC
AAGGCATTGGGGGAATGCGCCACCACCATCACGCCCAAGGCCCTCTCGCT
CCTCGTCTCCCACATGCTGTATTACCGCTTCCGCGGGAGTGGGACCGCGC
CTATCGTAGCCGGCCTCGAAGCGGATGGCACGCCGGTGTTGTGCACGCAG
GGTGAGGGAGAGGCGGTCGTGGTCGCGTTGGTATGGGTGGGGGATTTGCA
TGTATGGTCCCCAGGGTGTTTTTTTAGTTGGGTGGACGGTTCAGGAGAAG
GAATGGTAATGAGGAGTGAAAGCGAGGAAGCTTCTTTGCCTTTTGCCTGG
GACCTCGCTCGTGGTATTGGCGTCGGGTGTCATAGTTGGCACAGGCGTCG
ATAAGTGAACGGCCGCCTTCTGCTTGGCATGGTGGGGTACGACGCGATGG
CAGGCGCCTTCTTTGACATGCTGCGGGCGGAATTACACTTGCGAAGTATG
CGTCTCGAACAGCATCGCTCAGTTACTGGTGGGAGGAGAATGGAACGACT
ATGAAGATGAAAAAGAGGGAAACGTCAAAGGAAGTCAGCGTATTCTAAAG
ATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTACCCCCTTGC
TCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCATATTGCTGT
GGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAAGTGCCTTG
GCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGACGCGTTGG
CACAAGGCATTGGGGGAATGCGCCACCACCATCACGCCCAAGGCCCTCTC
GCTCCTCGTCTCCCACATGCTGTATTACCGCTTCCGCGGGAGTGGGACCG
CGCCTATCGTAGCCGGCCTCGAAGCGGATGGCACGCCGGTGTTGTGCACG
CAGGGTGAGGGAGAGGCGGTCGTGGTCGCGTTGGTATGGGTGGGGGATTT
GCATGTATGGTCCCCAGGGTGTTTTTTTAGTTGGGTGGACGGTTCAGGAG
AAGGAATGGTAATGAGGAGTGAAAGCGAGGAAGCTTCTTTGCCTTTTGCC
TGGGACCTCGCTCGTGGTATTGGCGTCGGGTGTCATAGTTGGCACAGGCG
TCGATAAGTGAACGGCCGCCTTCTGCTTGGCATGGTGGGGTACGACGCGA
TGGCAGGCGCCTTCTTTGACATGCTGCGGGCGGAATTACACTTGCGAAGT
ATGCGTCTCGAACAGCATCGCTCAGTTACTGGTGGGAGGAGAATGGAACG
ACTATGAAGATGAAAAAGAGGGAAACGTCAAAGGAAGTCAGCGTATTCTA
AAGATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTACCCCCT
TGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCATATTGC
TGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAAGTGCC
TTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGACGCGT
TGGCACAAGGCATTGGGGGAATGCGCCACCACCATCACGCCCAAGGCCCT
CTCGCTCCTCGTCTCCCACATGCTGTATTACCGCTTCCGCGGGAGTGGGA
CCGCGCCTATCGTAGCCGGCCTCGAAGCGGATGGCACGCCGGTGTTGTGC
ACGCAGGGTGAGGGAGAGGCGGTCGTGGTCGCGTTGGTATGGGTGGGGGA
TTTGCATGTATGGTCCCCAGGGTGTTTTTTTAGTTGGGTGGACGGTTCAG
GAGAAGGAATGGTAATGAGGAGTGAAAGCGAGGAAGCTTCTTTGCCTTTT
GCCTGGGACCTCGCTCGTGGTATTGGCGTCGGGTGTCATAGTTGGCACAG
GCGTCGATAAGTGAACGGCCGCCTTCTGCTTGGCATGGTGGGGTACGACG
CGATGGCAGGCGCCTTCTTTGACATGCTGCGGGCGGAATTACACTTGCGA
AGTATGCGTCTCGAACAGCATCGCTCAGTTACTGGTGGGAGGAGAATGGA
ACGACTATGAAGATGAAAAAGAGGGAAACGTCAAAGGAAGTCAGCGTATT
CTAAAGATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTACCC
CCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCATAT
TGCTGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAAGT
GCCTTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGACG
CGTTGGCACAAG back to top
|