EWM29522.1, cds1107 (CDS) Nannochloropsis gaditana

Overview
NameEWM29522.1
Unique Namecds1107
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1205353..1205558 -
Alignment locationCM002456.1:1205039..1205123 -
Alignment locationCM002456.1:1204788..1204898 -
Alignment locationCM002456.1:1204228..1204578 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29522.1
ProductProteasome, subunit alpha/beta
Orig transcript idgnl|cribi|Naga_100006g59.8611.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1205353..1205558 -
CM002456.1supercontigCM002456.1:1205039..1205123 -
CM002456.1supercontigCM002456.1:1204788..1204898 -
CM002456.1supercontigCM002456.1:1204228..1204578 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005839proteasome core complex
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
Homology
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|585112093|gb|EWM29522.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 510.375 bits (1313), Expect = 0.000e+0
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHVWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR 250
            MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHVWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR
Sbjct:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHVWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR 250          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|585112092|gb|EWM29521.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 374.785 bits (961), Expect = 4.313e-129
Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0
Query:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAV 189
            MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQ    AV
Sbjct:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAV 189          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|299116535|emb|CBN74723.1| (proteasome beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 77.411 bits (189), Expect = 1.379e-13
Identity = 63/164 (38.41%), Postives = 82/164 (50.00%), Query Frame = 0
Query:   40 NAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSG--TAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHV 201
            N ++L GGS LA+AGK C  LA+DRR G   QL+                  ++R+LKVNG+LL G  G           L +E+ L+S       L E    I P AL+ L+S +LY R RGS     PIVAGL+  G P LC    G+ ++ A V V D  V
Sbjct:   17 NPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLV---------------STEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKS-------LAEADRPIAPAALAGLLSTLLYSR-RGSPWFVEPIVAGLDPRGRPYLC----GQDILGAPVEVDDFVV 153          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|633907021|gb|KDD73458.1| (proteasome subunit protein, partial [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 68.9366 bits (167), Expect = 1.447e-10
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 0
Query:   43 KLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLC 181
            +  GG+ +A+AGK+C  +A D R+G   Q L      DY           +++ K++ +L LG+ G    A    ++ +   +L  +R E+         I+P A + LVS  LY +RF      P++AGL+ADG P LC
Sbjct:    3 EYNGGAIIAMAGKECVAIASDLRLGVQLQHLA----TDY-----------KKVYKIHDQLFLGLSGLATDATTLSNLFKFRYNLYKLREERD--------ISPPAFAQLVSSTLYSHRFGSYFCQPVIAGLQADGVPYLC 119          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|545712383|ref|XP_005708496.1| (proteasome beta subunit [Galdieria sulphuraria] >gi|452824977|gb|EME31976.1| proteasome beta subunit [Galdieria sulphuraria])

HSP 1 Score: 66.6254 bits (161), Expect = 9.153e-10
Identity = 44/140 (31.43%), Postives = 62/140 (44.29%), Query Frame = 0
Query:   45 QGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYY-RFRGSGTAPIVAGLEADGTPVLCTQ 183
             GG  LA+AG  C  +A DRR G   Q  +G +              + RI K+N RL+LG+ G        ++     L+L  +R E+         I P + + +V+  LY  RF      P+VAGL   G P LC Q
Sbjct:    9 NGGCVLAMAGDNCVAIAADRRFGVQ-QTTIGTD--------------TTRIFKINDRLMLGLTGLRTDVTTLYNRFVQRLNLYRLREERE--------IKPASFANMVASTLYSRRFSPYFVEPVVAGLTEKGEPYLCAQ 125          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|575479770|ref|XP_006679179.1| (hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|328770084|gb|EGF80126.1| hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|1028572947|gb|OAJ41251.1| hypothetical protein BDEG_24883 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 64.6994 bits (156), Expect = 4.620e-9
Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 0
Query:   42 VKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCT 182
            ++  G + +A+AGK C  +A DRR G  A L +G ++              Q+I  +  +  LG+ G         D  R ++++  +  E+         I+PK  S +VS   Y  RF      PIVAGLE D TP +C+
Sbjct:    4 MEYNGSAIIAMAGKNCVAIAADRRFGVQA-LTLGTDF--------------QKIFPITDKTYLGLAGLATDVTTLKDRFRYKVNMYHLEEERE--------ISPKTFSHMVSSTQYEKRFGPYFVEPIVAGLEKDNTPFICS 122          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|953443853|ref|XP_014565479.1| (hypothetical protein L969DRAFT_90462 [Mixia osmundae IAM 14324] >gi|358057136|dbj|GAA97043.1| hypothetical protein E5Q_03718 [Mixia osmundae IAM 14324] >gi|658162195|gb|KEI36915.1| hypothetical protein L969DRAFT_90462 [Mixia osmundae IAM 14324])

HSP 1 Score: 62.7734 bits (151), Expect = 2.098e-8
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 0
Query:   39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYY-RFRGSGTAPIVAGLEADGTPVLCT 182
            ++A+++ GGS +A+ GK C  +A D R+G  A  +   +               ++I  +     LG+ G  +     ++ LR   ++ +MR ++         ITP   + LVS  LY  RF      PI+AGLEADGTP + T
Sbjct:    1 MSAMEINGGSVIAMLGKDCVAIACDLRLGNQALTVACNQ---------------EKIFSITPTTYLGLPGLASDTLTVYEKLRHRTNMYAMREDR--------LITPTTFTHLVSSTLYERRFGPYFIEPIIAGLEADGTPFVAT 122          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|1149713276|ref|XP_020182676.1| (proteasome subunit beta type-3 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 62.7734 bits (151), Expect = 2.663e-8
Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = 0
Query:   39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCT 182
            ++  +  G + +A+ GK C  +A DRR+G   Q +      D+           QR+ K++G+L +G+ G  + A   +  L  +  L  +R E+         + P+  + LVS MLY  RF      PI+AGL  D  P +CT
Sbjct:    1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVA----TDF-----------QRVFKIHGKLYIGLSGLASDAQTLYQRLVFKHKLYQLREERD--------MKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 122          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|326509597|dbj|BAJ87014.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 62.7734 bits (151), Expect = 2.716e-8
Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = 0
Query:   39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCT 182
            ++  +  G + +A+ GK C  +A DRR+G   Q +      D+           QR+ K++G+L +G+ G  + A   +  L  +  L  +R E+         + P+  + LVS MLY  RF      PI+AGL  D  P +CT
Sbjct:    1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVA----TDF-----------QRVFKIHGKLYIGLSGLASDAQTLYQRLVFKHKLYQLREERD--------MKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 122          
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|1189382977|gb|OSX70365.1| (hypothetical protein BU14_0779s0009 [Porphyra umbilicalis])

HSP 1 Score: 62.3882 bits (150), Expect = 2.912e-8
Identity = 45/156 (28.85%), Postives = 68/156 (43.59%), Query Frame = 0
Query:   42 VKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWV 196
            ++  GG  +A+AGK C  +A D+R+G     +                    R+  +   L LG+ G         ++   +L+L +MR  +        TI P   + LVS  LY  RF      P++AGL+ADGTP LC      A+ VA  +V
Sbjct:    4 LEYNGGCVVAMAGKNCVAIASDKRLGVQLSTIA---------------MDCNRVFPMTDSLYLGLTGLHTDVTTLHNLFNFKLNLYAMREGR--------TIKPTTFASLVSSTLYEKRFGPYFAEPVIAGLQADGTPFLCAMDLLGAMAVADDFV 136          
The following BLAST results are available for this feature:
BLAST of EWM29522.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112093|gb|EWM29522.1|0.000e+0100.00Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
gi|585112092|gb|EWM29521.1|4.313e-12997.88Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
gi|299116535|emb|CBN74723.1|1.379e-1338.41proteasome beta subunit [Ectocarpus siliculosus][more]
gi|633907021|gb|KDD73458.1|1.447e-1031.43proteasome subunit protein, partial [Helicosporidi... [more]
gi|545712383|ref|XP_005708496.1|9.153e-1031.43proteasome beta subunit [Galdieria sulphuraria] >g... [more]
gi|575479770|ref|XP_006679179.1|4.620e-929.58hypothetical protein BATDEDRAFT_88542 [Batrachochy... [more]
gi|953443853|ref|XP_014565479.1|2.098e-829.66hypothetical protein L969DRAFT_90462 [Mixia osmund... [more]
gi|1149713276|ref|XP_020182676.1|2.663e-828.97proteasome subunit beta type-3 [Aegilops tauschii ... [more]
gi|326509597|dbj|BAJ87014.1|2.716e-828.97predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|1189382977|gb|OSX70365.1|2.912e-828.85hypothetical protein BU14_0779s0009 [Porphyra umbi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1108rna1108Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications