EWM29522.1, cds1107 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|585112093|gb|EWM29522.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana]) HSP 1 Score: 510.375 bits (1313), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHVWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR 250
MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHVWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR
Sbjct: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHVWSPGCFFSWVDGSGEGMVMRSESEEASLPFAWDLARGIGVGCHSWHRRR 250
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|585112092|gb|EWM29521.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana]) HSP 1 Score: 374.785 bits (961), Expect = 4.313e-129 Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0
Query: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAV 189
MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQ AV
Sbjct: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAV 189
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|299116535|emb|CBN74723.1| (proteasome beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 77.411 bits (189), Expect = 1.379e-13 Identity = 63/164 (38.41%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 40 NAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSG--TAPIVAGLEADGTPVLCTQGEGEAVVVALVWVGDLHV 201
N ++L GGS LA+AGK C LA+DRR G QL+ ++R+LKVNG+LL G G L +E+ L+S L E I P AL+ L+S +LY R RGS PIVAGL+ G P LC G+ ++ A V V D V
Sbjct: 17 NPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLV---------------STEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKS-------LAEADRPIAPAALAGLLSTLLYSR-RGSPWFVEPIVAGLDPRGRPYLC----GQDILGAPVEVDDFVV 153
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|633907021|gb|KDD73458.1| (proteasome subunit protein, partial [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 68.9366 bits (167), Expect = 1.447e-10 Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = 0
Query: 43 KLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLC 181
+ GG+ +A+AGK+C +A D R+G Q L DY +++ K++ +L LG+ G A ++ + +L +R E+ I+P A + LVS LY +RF P++AGL+ADG P LC
Sbjct: 3 EYNGGAIIAMAGKECVAIASDLRLGVQLQHLA----TDY-----------KKVYKIHDQLFLGLSGLATDATTLSNLFKFRYNLYKLREERD--------ISPPAFAQLVSSTLYSHRFGSYFCQPVIAGLQADGVPYLC 119
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|545712383|ref|XP_005708496.1| (proteasome beta subunit [Galdieria sulphuraria] >gi|452824977|gb|EME31976.1| proteasome beta subunit [Galdieria sulphuraria]) HSP 1 Score: 66.6254 bits (161), Expect = 9.153e-10 Identity = 44/140 (31.43%), Postives = 62/140 (44.29%), Query Frame = 0
Query: 45 QGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYY-RFRGSGTAPIVAGLEADGTPVLCTQ 183
GG LA+AG C +A DRR G Q +G + + RI K+N RL+LG+ G ++ L+L +R E+ I P + + +V+ LY RF P+VAGL G P LC Q
Sbjct: 9 NGGCVLAMAGDNCVAIAADRRFGVQ-QTTIGTD--------------TTRIFKINDRLMLGLTGLRTDVTTLYNRFVQRLNLYRLREERE--------IKPASFANMVASTLYSRRFSPYFVEPVVAGLTEKGEPYLCAQ 125
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|575479770|ref|XP_006679179.1| (hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|328770084|gb|EGF80126.1| hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|1028572947|gb|OAJ41251.1| hypothetical protein BDEG_24883 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 64.6994 bits (156), Expect = 4.620e-9 Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 0
Query: 42 VKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCT 182
++ G + +A+AGK C +A DRR G A L +G ++ Q+I + + LG+ G D R ++++ + E+ I+PK S +VS Y RF PIVAGLE D TP +C+
Sbjct: 4 MEYNGSAIIAMAGKNCVAIAADRRFGVQA-LTLGTDF--------------QKIFPITDKTYLGLAGLATDVTTLKDRFRYKVNMYHLEEERE--------ISPKTFSHMVSSTQYEKRFGPYFVEPIVAGLEKDNTPFICS 122
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|953443853|ref|XP_014565479.1| (hypothetical protein L969DRAFT_90462 [Mixia osmundae IAM 14324] >gi|358057136|dbj|GAA97043.1| hypothetical protein E5Q_03718 [Mixia osmundae IAM 14324] >gi|658162195|gb|KEI36915.1| hypothetical protein L969DRAFT_90462 [Mixia osmundae IAM 14324]) HSP 1 Score: 62.7734 bits (151), Expect = 2.098e-8 Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 0
Query: 39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYY-RFRGSGTAPIVAGLEADGTPVLCT 182
++A+++ GGS +A+ GK C +A D R+G A + + ++I + LG+ G + ++ LR ++ +MR ++ ITP + LVS LY RF PI+AGLEADGTP + T
Sbjct: 1 MSAMEINGGSVIAMLGKDCVAIACDLRLGNQALTVACNQ---------------EKIFSITPTTYLGLPGLASDTLTVYEKLRHRTNMYAMREDR--------LITPTTFTHLVSSTLYERRFGPYFIEPIIAGLEADGTPFVAT 122
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|1149713276|ref|XP_020182676.1| (proteasome subunit beta type-3 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 62.7734 bits (151), Expect = 2.663e-8 Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = 0
Query: 39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCT 182
++ + G + +A+ GK C +A DRR+G Q + D+ QR+ K++G+L +G+ G + A + L + L +R E+ + P+ + LVS MLY RF PI+AGL D P +CT
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVA----TDF-----------QRVFKIHGKLYIGLSGLASDAQTLYQRLVFKHKLYQLREERD--------MKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 122
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|326509597|dbj|BAJ87014.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 62.7734 bits (151), Expect = 2.716e-8 Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = 0
Query: 39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCT 182
++ + G + +A+ GK C +A DRR+G Q + D+ QR+ K++G+L +G+ G + A + L + L +R E+ + P+ + LVS MLY RF PI+AGL D P +CT
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVA----TDF-----------QRVFKIHGKLYIGLSGLASDAQTLYQRLVFKHKLYQLREERD--------MKPETFASLVSSMLYEKRFGPYFCQPIIAGLGQDDEPFICT 122
BLAST of EWM29522.1 vs. NCBI_GenBank
Match: gi|1189382977|gb|OSX70365.1| (hypothetical protein BU14_0779s0009 [Porphyra umbilicalis]) HSP 1 Score: 62.3882 bits (150), Expect = 2.912e-8 Identity = 45/156 (28.85%), Postives = 68/156 (43.59%), Query Frame = 0
Query: 42 VKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQGEGEAVVVALVWV 196
++ GG +A+AGK C +A D+R+G + R+ + L LG+ G ++ +L+L +MR + TI P + LVS LY RF P++AGL+ADGTP LC A+ VA +V
Sbjct: 4 LEYNGGCVVAMAGKNCVAIASDKRLGVQLSTIA---------------MDCNRVFPMTDSLYLGLTGLHTDVTTLHNLFNFKLNLYAMREGR--------TIKPTTFASLVSSTLYEKRFGPYFAEPVIAGLQADGTPFLCAMDLLGAMAVADDFV 136 The following BLAST results are available for this feature:
BLAST of EWM29522.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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