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Properties
| Property Name | Value |
|---|
| Product | Proteasome, subunit alpha/beta |
| Orig transcript id | gnl|cribi|Naga_100006g59.8610.mrna |
| Orig protein id | gnl|cribi|Naga_100006g59.8610 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1202930..1205766 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1107 ID=rna1107|Name=rna1107|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp
CGTCCCACATCAAATGCAATTCATAGTACTATTATTCTATTTTGCATATA
CTGTCAAGTATGACAGAGAGCATTGAGGTACGGGTCGTGGCCACTGTCGT
CGGATCTGACAGCTTGCCCCAAGAGGGAGAGGAGGTATTCTCCACCAGGC
GACAAAAGACAAGCATGATGTCTACAGTATGGTTCCACTTTTCTAACACG
ATCAATCATTACTCGTTTCACGCCTCTTCATGTTGAAAAAGGCAAGAAGG
TGCTCAGTTTTTTATTTTTCATTCCTGGAACAAGCTCATGGCCGAGTGAC
GGAAAAGAGCAGGACGGCCACCCTTCTTGTTGACCGAGAAATTTCTCATC
ACGCTCATGACATCCACACGATTCTACTGAAAACGTGTTCAAACTCCCTC
TACGACGTTGCTAGTGGGGTCACGCGTCTCCAAGAGGCTATCTTTTTCGC
AAATTCCACAAAGCAAAATCTCACCCCCCCGCATACGCTCGCCGGAAAGA
TACTCACTTATCTTCTGAGCTCGCGTGCGTGTGTGGGATTAAAAAAAGAC
TTTTTCGACGGCCGGGACGCGCCGAGCACGGCACAAGGGGAAGCGAGGTA
GGTGACATATATTCACAATGTTTCCCAGCTCGAAGACGTCGAACGCGGCG
ATTGTCTTGTGGACTGACGATGGCCTTTGCTTTTCCACAGGCCACGGCTG
GCTGAGTCACAGAATGGAAAATATGGCGACCTGACCGGACACCGAAAGCA
GGGCACGCTGATTACGACAAAAACCACCAGTGCGTGGGAAAGAAATAAAG
ACCCGAAGCCAGCCAGCCCACCAAAGGAGGCTGTGTGGTTTAGATTGTGT
GACGAGGACTAGGATTTTATTTCCCCCCCCAGTTTTATTGAATAAATTTT
CGCTCGTCTTCCCATGATATATGTATGTGCCTTGCGTCAGGTTGCGATTT
TCATTGCCCTTAATCACGACCACTGAAAGCCCGCGCCTGAGAGACAAGAA
AAGGTGCGACCCCATGCTCAGGCAGGCAGAGCCACAACAATTTGGATACC
AATATCTGGATTTTTTATGTGCTGAATCCAACAGTAAGGGACGTGCAAGA
GACGTTTGTTGTCAACGTTAACTGAAAGAACGGCTGGCCCCTCGTGCATG
GAAGACCCCTGAAGATGATGGGATGGCATCGAGACACTTTTTCTACAACT
GTGTCGTCAATGCTGTTACACTTGTAACTACAAGGAGTTGTCGTGCATCG
AAGTGAAGTTGCGCTATATTCTTATCGCATCGAGTTTGCTTTTCCACCTA
TACCCTATCCACCTCGAAAATGCCTCCTGCGCCTCTTCACGTACACGATT
GTGAGCATAGGATGCTACATTTTGCGCTTTCATCATGCTTATAGAAGTCC
AAATAAG back to topprotein sequence of rna1107 >rna1107-protein ID=rna1107-protein|Name=rna1107|organism=Nannochloropsis gaditana|type=polypeptide|length=264bp
MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSAL
ALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNG
RLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSL
LVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGS
SSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLIT
PEGMARTCVQGRMD back to topmRNA from alignment at CM002456.1:1202930..1205766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1107 ID=rna1107|Name=rna1107|organism=Nannochloropsis gaditana|type=mRNA|length=2837bp|location=Sequence derived from alignment at CM002456.1:1202930..1205766- (Nannochloropsis gaditana)
TTTGTACTAGTATGGGTCTGTCGAGACCGACTCGGAGTAGCACAGGGCGT
CAGTCGCTCACGCTTTAGGTAAACTTAGTTGTTGTTCCATGAGTGTTCGA
CCCGAGGCAGGGGCACACACGTAGCCTCTCACACTTGAACTGTAAGTCAG
ATTTTTAACGAAAAGGGGTTGTGACTCATTTACCTTTAACACACAAAAAA
CTAAGGCCATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCCTCCTAC
CCCCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCTTTGCAT
ATTGCTGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAGGTGGAA
GTGCCTTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATGGATCGA
CGCGTTGGCACAAGGTGAGAATTGAGGTCGGCAGACAGGGCCTAAGAAAA
AGGCAAGGCGTGAGACTCTAATTGCGAAAGTACACCCTTTCGCTCAATTT
CGTGCTTATGTGGAACATCTGGCCGTCTGTATGCCTAGAGAAGGCAAAGA
AATGCGTCTTTGCTTACAGAACAAATGAATTAAGCCTCTGGAGTCCTGAA
GTTTGAGTGAAGAGTCTCACTTCACATCCCTTCTCTCTTGCAGCGCTCAG
TTACTGGTGGGAGGAGAATGGAACGACTATGAAGATGAAAAAGAGGGAAA
CGTCAAAGGAAGTCAGCGTATTCTAAAGGTATGGCTTGCGGGCCGTTTCC
AAAAGGGCAGGGCGCAAGGATTGATCGGACTCTCCTCGTCATGACATGAC
TACATAGCAAACGAGCCCTTGCTCGGTCGCAAAAGAGCTCATCTGGAAAT
GGGCTTTTCTGTACGCAGGTGAACGGCCGCCTTCTGCTTGGCATGGTGGG
GTACGACGCGATGGCAGGCGCCTTCTTTGACATGCTGCGGGCGGAATTAC
ACTTGCGAAGTATGCGTCTCGAACAGCATGTATGTCGTGGGACGCTTACA
TGGCTCCCCGTGACGATAGTTTGATTTGAAGTCTCGAACATGGCGGGCTT
GCCCGTGGATGTGAGGGGGGCGGCCTCAACTGTCTCGCCTCGCGAAAACG
TCGAAGCTAGGCCTTCCCGTTCCCTCTCGACTTCCTCCCCCTTGTCAACA
TGCCTCCTTTCCTTTCGTTCCACTTGTGTTCTTGGCAGGCATTGGGGGAA
TGCGCCACCACCATCACGCCCAAGGCCCTCTCGCTCCTCGTCTCCCACAT
GCTGTATTACCGCTTCCGCGGGAGTGGGACCGCGCCTATCGTAGCCGGCC
TCGAAGCGGATGGCACGCCGGTGTTGTGCACGCAGGGTGAGGGAGAGGCG
GTCGTGGTCGCGTTGGTATGGGTGGGGGATTTGCATGTATGGTCCCCAGG
GTGTTTTTTTAGTTGGGTGGACGGTTCAGGAGAAGGAATGGTAATGAGGA
GTGAAAGCGAGGAAGCTTCTTTGCCTTTTGCCTGGGACCTCGCTCGTGGT
ATTGGCGTCGGGTGTCATAGTTGGCACAGGCGTCGATAATTTGCCCCGCC
CCGTAACCCTTGCAGAAGCCAGCCGACGTAGAACTCGCCTTCCTCTTTCC
TCCTCATTCTTGCCAGACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTT
TGTTGCCTTGGGCTCCTCCTCCAAAGCCGTACTCGGCGCATGTGAGGTAA
GCTTACAGCTAGGGGTGCGTACCCGCTGGTACGGCGGATGCCCTCTGGAA
AAATGTCACGGCACGCGTGGCTCTGCCGGCCATGATTGTCTTGCAGTTGG
AGCGTTACTTATTGTCTGAAACATTCACGTCACCACACTGCCGCCTGGCC
TTCTGCTCCACAGGCCTTGTATCGACCCAACCTGGAAGGCGATGCGCTCC
TCCAATTGGCTTGCCGGTGTCTGCGTGCAGGGCTCGAGCGTGACTGTGCC
AGCGGGTACGGATTGGTTGCCTACTTGATAACACCGGAGGGGATGGCGCG
GACGTGTGTCCAAGGGCGAATGGATTAATAGGGCTGCTGATTGTAAATTC
TGATTTGTTGAAGCAAAGCATCCACACACTGTAATGAAGCAAGCACGCTT
AAAAATTTAATAACGAGGAAAAAATTAAAGGTTAATTGTGCTTATTTGGA
CTTCTATAAGCATGATGAAAGCGCAAAATGTAGCATCCTATGCTCACAAT
CGTGTACGTGAAGAGGCGCAGGAGGCATTTTCGAGGTGGATAGGGTATAG
GTGGAAAAGCAAACTCGATGCGATAAGAATATAGCGCAACTTCACTTCGA
TGCACGACAACTCCTTGTAGTTACAAGTGTAACAGCATTGACGACACAGT
TGTAGAAAAAGTGTCTCGATGCCATCCCATCATCTTCAGGGGTCTTCCAT
GCACGAGGGGCCAGCCGTTCTTTCAGTTAACGTTGACAACAAACGTCTCT
TGCACGTCCCTTACTGTTGGATTCAGCACATAAAAAATCCAGATATTGGT
ATCCAAATTGTTGTGGCTCTGCCTGCCTGAGCATGGGGTCGCACCTTTTC
TTGTCTCTCAGGCGCGGGCTTTCAGTGGTCGTGATTAAGGGCAATGAAAA
TCGCAACCTGACGCAAGGCACATACATATATCATGGGAAGACGAGCGAAA
ATTTATTCAATAAAACTGGGGGGGGAAATAAAATCCTAGTCCTCGTCACA
CAATCTAAACCACACAGCCTCCTTTGGTGGGCTGGCTGGCTTCGGGTCTT
TATTTCTTTCCCACGCACTGGTGGTTTTTGTCGTAATCAGCGTGCCCTGC
TTTCGGTGTCCGGTCAGGTCGCCATATTTTCCATTCT back to topCoding sequence (CDS) from alignment at CM002456.1:1202930..1205766- >rna1107 ID=rna1107|Name=rna1107|organism=Nannochloropsis gaditana|type=CDS|length=4770bp|location=Sequence derived from alignment at CM002456.1:1202930..1205766- (Nannochloropsis gaditana)
GCCTTGTATCGACCCAACCTGGAAGGCGATGCGCTCCTCCAATTGGCTTG
CCGGTGTCTGCGTGCAGGGCTCGAGCGTGACTGTGCCAGCGGGTACGGAT
TGGTTGCCTACTTGATAACACCGGAGGGGATGGCGCGGACGTGTGTCCAA
GGGCGAATGGATTAAACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTTT
GTTGCCTTGGGCTCCTCCTCCAAAGCCGTACTCGGCGCATGTGAGGCATT
GGGGGAATGCGCCACCACCATCACGCCCAAGGCCCTCTCGCTCCTCGTCT
CCCACATGCTGTATTACCGCTTCCGCGGGAGTGGGACCGCGCCTATCGTA
GCCGGCCTCGAAGCGGATGGCACGCCGGTGTTGTGCACGCAGGGTGAACG
GCCGCCTTCTGCTTGGCATGGTGGGGTACGACGCGATGGCAGGCGCCTTC
TTTGACATGCTGCGGGCGGAATTACACTTGCGAAGTATGCGTCTCGAACA
GCATCGCTCAGTTACTGGTGGGAGGAGAATGGAACGACTATGAAGATGAA
AAAGAGGGAAACGTCAAAGGAAGTCAGCGTATTCTAAAGATGAAATTCAG
ACCTCCTCCCTCGAGCGCCCGGCCCTCCTACCCCCTTGCTCGCCTTTCGG
TTGTCTTTTCGAGAATATGCATCCTTTGCATATTGCTGTGGAGACCTCAG
TGTGTGAATGCCGTAAAGTTACAAGGTGGAAGTGCCTTGGCACTGGCTGG
AAAAAAATGTGCGGTCCTAGCCATGGATCGACGCGTTGGCACAAGGCCTT
GTATCGACCCAACCTGGAAGGCGATGCGCTCCTCCAATTGGCTTGCCGGT
GTCTGCGTGCAGGGCTCGAGCGTGACTGTGCCAGCGGGTACGGATTGGTT
GCCTACTTGATAACACCGGAGGGGATGGCGCGGACGTGTGTCCAAGGGCG
AATGGATTAAACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTTTGTTGC
CTTGGGCTCCTCCTCCAAAGCCGTACTCGGCGCATGTGAGGCATTGGGGG
AATGCGCCACCACCATCACGCCCAAGGCCCTCTCGCTCCTCGTCTCCCAC
ATGCTGTATTACCGCTTCCGCGGGAGTGGGACCGCGCCTATCGTAGCCGG
CCTCGAAGCGGATGGCACGCCGGTGTTGTGCACGCAGGGTGAACGGCCGC
CTTCTGCTTGGCATGGTGGGGTACGACGCGATGGCAGGCGCCTTCTTTGA
CATGCTGCGGGCGGAATTACACTTGCGAAGTATGCGTCTCGAACAGCATC
GCTCAGTTACTGGTGGGAGGAGAATGGAACGACTATGAAGATGAAAAAGA
GGGAAACGTCAAAGGAAGTCAGCGTATTCTAAAGATGAAATTCAGACCTC
CTCCCTCGAGCGCCCGGCCCTCCTACCCCCTTGCTCGCCTTTCGGTTGTC
TTTTCGAGAATATGCATCCTTTGCATATTGCTGTGGAGACCTCAGTGTGT
GAATGCCGTAAAGTTACAAGGTGGAAGTGCCTTGGCACTGGCTGGAAAAA
AATGTGCGGTCCTAGCCATGGATCGACGCGTTGGCACAAGGCCTTGTATC
GACCCAACCTGGAAGGCGATGCGCTCCTCCAATTGGCTTGCCGGTGTCTG
CGTGCAGGGCTCGAGCGTGACTGTGCCAGCGGGTACGGATTGGTTGCCTA
CTTGATAACACCGGAGGGGATGGCGCGGACGTGTGTCCAAGGGCGAATGG
ATTAAACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTTTGTTGCCTTGG
GCTCCTCCTCCAAAGCCGTACTCGGCGCATGTGAGGCATTGGGGGAATGC
GCCACCACCATCACGCCCAAGGCCCTCTCGCTCCTCGTCTCCCACATGCT
GTATTACCGCTTCCGCGGGAGTGGGACCGCGCCTATCGTAGCCGGCCTCG
AAGCGGATGGCACGCCGGTGTTGTGCACGCAGGGTGAACGGCCGCCTTCT
GCTTGGCATGGTGGGGTACGACGCGATGGCAGGCGCCTTCTTTGACATGC
TGCGGGCGGAATTACACTTGCGAAGTATGCGTCTCGAACAGCATCGCTCA
GTTACTGGTGGGAGGAGAATGGAACGACTATGAAGATGAAAAAGAGGGAA
ACGTCAAAGGAAGTCAGCGTATTCTAAAGATGAAATTCAGACCTCCTCCC
TCGAGCGCCCGGCCCTCCTACCCCCTTGCTCGCCTTTCGGTTGTCTTTTC
GAGAATATGCATCCTTTGCATATTGCTGTGGAGACCTCAGTGTGTGAATG
CCGTAAAGTTACAAGGTGGAAGTGCCTTGGCACTGGCTGGAAAAAAATGT
GCGGTCCTAGCCATGGATCGACGCGTTGGCACAAGGCCTTGTATCGACCC
AACCTGGAAGGCGATGCGCTCCTCCAATTGGCTTGCCGGTGTCTGCGTGC
AGGGCTCGAGCGTGACTGTGCCAGCGGGTACGGATTGGTTGCCTACTTGA
TAACACCGGAGGGGATGGCGCGGACGTGTGTCCAAGGGCGAATGGATTAA
ACTCGCTGGGCGCCGTCTCCTTCCAGAAGGATTTTGTTGCCTTGGGCTCC
TCCTCCAAAGCCGTACTCGGCGCATGTGAGGCATTGGGGGAATGCGCCAC
CACCATCACGCCCAAGGCCCTCTCGCTCCTCGTCTCCCACATGCTGTATT
ACCGCTTCCGCGGGAGTGGGACCGCGCCTATCGTAGCCGGCCTCGAAGCG
GATGGCACGCCGGTGTTGTGCACGCAGGGTGAACGGCCGCCTTCTGCTTG
GCATGGTGGGGTACGACGCGATGGCAGGCGCCTTCTTTGACATGCTGCGG
GCGGAATTACACTTGCGAAGTATGCGTCTCGAACAGCATCGCTCAGTTAC
TGGTGGGAGGAGAATGGAACGACTATGAAGATGAAAAAGAGGGAAACGTC
AAAGGAAGTCAGCGTATTCTAAAGATGAAATTCAGACCTCCTCCCTCGAG
CGCCCGGCCCTCCTACCCCCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAA
TATGCATCCTTTGCATATTGCTGTGGAGACCTCAGTGTGTGAATGCCGTA
AAGTTACAAGGTGGAAGTGCCTTGGCACTGGCTGGAAAAAAATGTGCGGT
CCTAGCCATGGATCGACGCGTTGGCACAAGGCCTTGTATCGACCCAACCT
GGAAGGCGATGCGCTCCTCCAATTGGCTTGCCGGTGTCTGCGTGCAGGGC
TCGAGCGTGACTGTGCCAGCGGGTACGGATTGGTTGCCTACTTGATAACA
CCGGAGGGGATGGCGCGGACGTGTGTCCAAGGGCGAATGGATTAAACTCG
CTGGGCGCCGTCTCCTTCCAGAAGGATTTTGTTGCCTTGGGCTCCTCCTC
CAAAGCCGTACTCGGCGCATGTGAGGCATTGGGGGAATGCGCCACCACCA
TCACGCCCAAGGCCCTCTCGCTCCTCGTCTCCCACATGCTGTATTACCGC
TTCCGCGGGAGTGGGACCGCGCCTATCGTAGCCGGCCTCGAAGCGGATGG
CACGCCGGTGTTGTGCACGCAGGGTGAACGGCCGCCTTCTGCTTGGCATG
GTGGGGTACGACGCGATGGCAGGCGCCTTCTTTGACATGCTGCGGGCGGA
ATTACACTTGCGAAGTATGCGTCTCGAACAGCATCGCTCAGTTACTGGTG
GGAGGAGAATGGAACGACTATGAAGATGAAAAAGAGGGAAACGTCAAAGG
AAGTCAGCGTATTCTAAAGATGAAATTCAGACCTCCTCCCTCGAGCGCCC
GGCCCTCCTACCCCCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGC
ATCCTTTGCATATTGCTGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTT
ACAAGGTGGAAGTGCCTTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAG
CCATGGATCGACGCGTTGGCACAAGGCCTTGTATCGACCCAACCTGGAAG
GCGATGCGCTCCTCCAATTGGCTTGCCGGTGTCTGCGTGCAGGGCTCGAG
CGTGACTGTGCCAGCGGGTACGGATTGGTTGCCTACTTGATAACACCGGA
GGGGATGGCGCGGACGTGTGTCCAAGGGCGAATGGATTAAACTCGCTGGG
CGCCGTCTCCTTCCAGAAGGATTTTGTTGCCTTGGGCTCCTCCTCCAAAG
CCGTACTCGGCGCATGTGAGGCATTGGGGGAATGCGCCACCACCATCACG
CCCAAGGCCCTCTCGCTCCTCGTCTCCCACATGCTGTATTACCGCTTCCG
CGGGAGTGGGACCGCGCCTATCGTAGCCGGCCTCGAAGCGGATGGCACGC
CGGTGTTGTGCACGCAGGGTGAACGGCCGCCTTCTGCTTGGCATGGTGGG
GTACGACGCGATGGCAGGCGCCTTCTTTGACATGCTGCGGGCGGAATTAC
ACTTGCGAAGTATGCGTCTCGAACAGCATCGCTCAGTTACTGGTGGGAGG
AGAATGGAACGACTATGAAGATGAAAAAGAGGGAAACGTCAAAGGAAGTC
AGCGTATTCTAAAGATGAAATTCAGACCTCCTCCCTCGAGCGCCCGGCCC
TCCTACCCCCTTGCTCGCCTTTCGGTTGTCTTTTCGAGAATATGCATCCT
TTGCATATTGCTGTGGAGACCTCAGTGTGTGAATGCCGTAAAGTTACAAG
GTGGAAGTGCCTTGGCACTGGCTGGAAAAAAATGTGCGGTCCTAGCCATG
GATCGACGCGTTGGCACAAG back to top
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