EWM29521.1, cds1106 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|585112092|gb|EWM29521.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana]) HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD
Sbjct: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|585112093|gb|EWM29522.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana]) HSP 1 Score: 374.785 bits (961), Expect = 4.555e-129 Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0
Query: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAV 189
MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQ AV
Sbjct: 1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAV 189
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|299116535|emb|CBN74723.1| (proteasome beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 152.525 bits (384), Expect = 4.207e-42 Identity = 97/227 (42.73%), Postives = 127/227 (55.95%), Query Frame = 0
Query: 40 NAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSG--TAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
N ++L GGS LA+AGK C LA+DRR G QL+ ++R+LKVNG+LL G G L +E+ L+S L E I P AL+ L+S +LY R RGS PIVAGL+ G P LC QD LGA DFV G+S++++ G CEA +RP +E + L ++A RCL + LERDC SGYG V +LIT EG+ + RMD
Sbjct: 17 NPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLVS---------------TEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKS-------LAEADRPIAPAALAGLLSTLLYSR-RGSPWFVEPIVAGLDPRGRPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 220
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|566156867|ref|XP_002300970.2| (Proteasome subunit beta type 3-2 family protein [Populus trichocarpa] >gi|550344535|gb|EEE80243.2| Proteasome subunit beta type 3-2 family protein [Populus trichocarpa]) HSP 1 Score: 134.42 bits (337), Expect = 2.880e-35 Identity = 74/223 (33.18%), Postives = 120/223 (53.81%), Query Frame = 0
Query: 43 KLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
+ G + +A+ GK C +A DRR+G + Q + D+ QRI K++ +L +G+ G A + L L +R E+ + P+ + LVS +LY RF P++AGL+ D P +CT D +GA KDFV GS+S+++ GACEA ++P++E D L ++ + L A ++RDC SG+G Y++TP+ + ++GRMD
Sbjct: 5 EYNGSAIVAMVGKNCFAIASDRRLGVNLQTVA----TDF-----------QRIYKIHDKLFVGLSGLGTDAQTLYQRLVFRHKLYQLREER--------DMKPETFANLVSAVLYEKRFGPYFCQPVIAGLDDDDKPFICTMDFIGAKELAKDFVVAGSASESLYGACEAFFKPDMEPDELFEVVSQALLASVDRDCLSGWGGHIYIVTPDDIKEKILKGRMD 204
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|1026758487|gb|OAE20553.1| (hypothetical protein AXG93_3873s1110 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 134.42 bits (337), Expect = 3.039e-35 Identity = 72/221 (32.58%), Postives = 121/221 (54.75%), Query Frame = 0
Query: 45 QGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
G + +A+ GK C +A DRR+G + Q + DY QRI +++ +L +G+ G + L+ L +R E++ + P+ + LVS MLY RF PI+AGL D P +CT D +GA + DFV G++S+++ GACE++Y+P+LE D L ++ + L + ++RDC SG+G + +++TP+ + ++GRMD
Sbjct: 7 NGSALVAMLGKNCFAIASDRRLGVNFQTIA----TDY-----------QRIFEIHEKLYIGLSGLGTDVQTLYQRLKFRHKLYQLREERN--------MRPETFASLVSAMLYEKRFGPYFCEPIIAGLSEDNVPFICTTDLIGAKQYSSDFVVSGTASESLYGACESMYKPDLEPDDLFEVIAQALISSVDRDCISGWGGIVHIVTPDQVITKTLRGRMD 204
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|118487526|gb|ABK95590.1| (unknown [Populus trichocarpa]) HSP 1 Score: 133.65 bits (335), Expect = 5.423e-35 Identity = 73/223 (32.74%), Postives = 120/223 (53.81%), Query Frame = 0
Query: 43 KLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
+ G + +A+ GK C +A DRR+G + Q + D+ QRI K++ +L +G+ G A + L + +R E+ + P+ + LVS +LY RF P++AGL+ D P +CT D +GA KDFV GS+S+++ GACEA ++P++E D L ++ + L A ++RDC SG+G Y++TP+ + ++GRMD
Sbjct: 5 EYNGSAIVAMVGKNCFAIASDRRLGVNLQTVA----TDF-----------QRIYKIHDKLFVGLSGLGTDAQTLYQRLVFRHKMYQLREER--------DMKPETFANLVSAVLYEKRFGPYFCQPVIAGLDDDDKPFICTMDFIGAKELAKDFVVAGSASESLYGACEAFFKPDMEPDELFEVVSQALLASVDRDCLSGWGGHIYIVTPDDIKEKILKGRMD 204
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|902236678|gb|KNA24482.1| (hypothetical protein SOVF_015190 [Spinacia oleracea]) HSP 1 Score: 133.265 bits (334), Expect = 9.676e-35 Identity = 72/227 (31.72%), Postives = 121/227 (53.30%), Query Frame = 0
Query: 39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
++ + G + +A+ GK C + DRR+G Q + D+ QRI +++ RL +G+ G + A + L L +R E+ + P+ + LVS +LY RF P++AGL D P +CT DS+GA KDFV G++S+++ GACE++Y+P++E + L + + L+A ++RDC SG+G Y++TP + ++GRMD
Sbjct: 1 MSIFEYNGSATVAMVGKNCIAIGSDRRLGVQLQTIA----TDF-----------QRIFQIHDRLFIGLSGLGSDAQTLYQRLVFRHKLYQLREER--------DMKPETFANLVSAILYEKRFGPYFCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVAGTASESLYGACESMYKPDMEPEELFETVSQALQASVDRDCLSGWGGHVYIVTPTEIKEHILKGRMD 204
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|575479770|ref|XP_006679179.1| (hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|328770084|gb|EGF80126.1| hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|1028572947|gb|OAJ41251.1| hypothetical protein BDEG_24883 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 133.265 bits (334), Expect = 9.676e-35 Identity = 72/224 (32.14%), Postives = 118/224 (52.68%), Query Frame = 0
Query: 42 VKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
++ G + +A+AGK C +A DRR G A L +G ++ Q+I + + LG+ G D R ++++ + E+ I+PK S +VS Y RF PIVAGLE D TP +C+ D++G ++F KDFV G++S + G CE+L+ P+LE + L ++ + L ++RD SG+G + ++ITP + ++GRMD
Sbjct: 4 MEYNGSAIIAMAGKNCVAIAADRRFGVQA-LTLGTDF--------------QKIFPITDKTYLGLAGLATDVTTLKDRFRYKVNMYHLEEERE--------ISPKTFSHMVSSTQYEKRFGPYFVEPIVAGLEKDNTPFICSMDTIGCINFAKDFVVCGTASDQMNGMCESLWEPDLEPEELFEVISQALLNAIDRDAISGWGGIVHIITPTSVITRTLKGRMD 204
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|302764110|ref|XP_002965476.1| (hypothetical protein SELMODRAFT_266913 [Selaginella moellendorffii] >gi|302823097|ref|XP_002993203.1| hypothetical protein SELMODRAFT_272317 [Selaginella moellendorffii] >gi|300138973|gb|EFJ05723.1| hypothetical protein SELMODRAFT_272317 [Selaginella moellendorffii] >gi|300166290|gb|EFJ32896.1| hypothetical protein SELMODRAFT_266913 [Selaginella moellendorffii]) HSP 1 Score: 132.88 bits (333), Expect = 1.238e-34 Identity = 74/221 (33.48%), Postives = 123/221 (55.66%), Query Frame = 0
Query: 46 GGSAL-ALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
GSAL A+ GK C +A DRR+G + Q + D+ QRI K++ +L +G+ G + + L+ +L ++ E+ + P+ S VS LY RF P++AGL AD P +CT DS+GA+ KDFV G++S+++ GACE++Y+P++E + L + + L + ++RDC SG+G + Y++TP+ + ++GRMD
Sbjct: 7 NGSALVAMVGKDCFAIASDRRLGVNFQTIA----TDF-----------QRIFKIHDKLYVGLAGLASDVQTLYQRLKYRHNLFQLQEERD--------MRPETFSNFVSATLYEKRFGPYFVQPLIAGLGADNKPYICTMDSIGAIEHSKDFVVGGTASESLYGACESMYKPDMEPEDLFETISQALISSVDRDCLSGWGGIVYVVTPDQVIVRTLKGRMD 204
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|731320011|ref|XP_010670575.1| (PREDICTED: proteasome subunit beta type-3-A [Beta vulgaris subsp. vulgaris] >gi|870866000|gb|KMT17029.1| hypothetical protein BVRB_2g042300 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 132.109 bits (331), Expect = 2.116e-34 Identity = 74/227 (32.60%), Postives = 121/227 (53.30%), Query Frame = 0
Query: 39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
++ + G + +A+ GK C +A DRR+G Q + D+ QRI +++ RL +G+ G A + L L +R E+ + P+ + LVS +LY RF P++AGL D P +CT DS+GA KDFV G++S+++ GACE++Y+P++E + L + + L+A ++RDC SG+G YL+TP + ++GRMD
Sbjct: 1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIA----TDF-----------QRIYQIHDRLFIGLSGLGTDAQTLYQRLVFRHKLYHLREER--------DMKPETFANLVSAILYEKRFGPYFCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVAGTASESLYGACESMYKPDMEPEDLFETVSQALQASIDRDCLSGWGGHVYLVTPTEIKERILKGRMD 204 The following BLAST results are available for this feature:
BLAST of EWM29521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|