EWM29521.1, cds1106 (CDS) Nannochloropsis gaditana

Overview
NameEWM29521.1
Unique Namecds1106
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1205353..1205558 -
Alignment locationCM002456.1:1205039..1205123 -
Alignment locationCM002456.1:1204788..1204898 -
Alignment locationCM002456.1:1204431..1204578 -
Alignment locationCM002456.1:1204071..1204150 -
Alignment locationCM002456.1:1203739..1203903 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29521.1
ProductProteasome, subunit alpha/beta
Orig transcript idgnl|cribi|Naga_100006g59.8610.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1205353..1205558 -
CM002456.1supercontigCM002456.1:1205039..1205123 -
CM002456.1supercontigCM002456.1:1204788..1204898 -
CM002456.1supercontigCM002456.1:1204431..1204578 -
CM002456.1supercontigCM002456.1:1204071..1204150 -
CM002456.1supercontigCM002456.1:1203739..1203903 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005839proteasome core complex
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|585112092|gb|EWM29521.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD
Sbjct:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|585112093|gb|EWM29522.1| (Proteasome, subunit alpha/beta [Nannochloropsis gaditana])

HSP 1 Score: 374.785 bits (961), Expect = 4.555e-129
Identity = 185/189 (97.88%), Postives = 185/189 (97.88%), Query Frame = 0
Query:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQDSLGAV 189
            MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQ    AV
Sbjct:    1 MKFRPPPSSARPSYPLARLSVVFSRICILCILLWRPQCVNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSGTAPIVAGLEADGTPVLCTQGEGEAV 189          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|299116535|emb|CBN74723.1| (proteasome beta subunit [Ectocarpus siliculosus])

HSP 1 Score: 152.525 bits (384), Expect = 4.207e-42
Identity = 97/227 (42.73%), Postives = 127/227 (55.95%), Query Frame = 0
Query:   40 NAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLYYRFRGSG--TAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            N ++L GGS LA+AGK C  LA+DRR G   QL+                  ++R+LKVNG+LL G  G           L +E+ L+S       L E    I P AL+ L+S +LY R RGS     PIVAGL+  G P LC QD LGA     DFV  G+S++++ G CEA +RP +E + L ++A RCL + LERDC SGYG V +LIT EG+    +  RMD
Sbjct:   17 NPLELNGGSCLAMAGKGCVALAVDRRFGLEGQLVS---------------TEAKRVLKVNGQLLCGFTGLWTDVLTVMQDLSSEVALKS-------LAEADRPIAPAALAGLLSTLLYSR-RGSPWFVEPIVAGLDPRGRPYLCGQDILGAPVEVDDFVVAGTSAQSLYGTCEAFFRPGMEREELFRVASRCLLSALERDCLSGYGAVVHLITEEGIETRELTTRMD 220          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|566156867|ref|XP_002300970.2| (Proteasome subunit beta type 3-2 family protein [Populus trichocarpa] >gi|550344535|gb|EEE80243.2| Proteasome subunit beta type 3-2 family protein [Populus trichocarpa])

HSP 1 Score: 134.42 bits (337), Expect = 2.880e-35
Identity = 74/223 (33.18%), Postives = 120/223 (53.81%), Query Frame = 0
Query:   43 KLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            +  G + +A+ GK C  +A DRR+G + Q +      D+           QRI K++ +L +G+ G    A   +  L     L  +R E+         + P+  + LVS +LY  RF      P++AGL+ D  P +CT D +GA    KDFV  GS+S+++ GACEA ++P++E D L ++  + L A ++RDC SG+G   Y++TP+ +    ++GRMD
Sbjct:    5 EYNGSAIVAMVGKNCFAIASDRRLGVNLQTVA----TDF-----------QRIYKIHDKLFVGLSGLGTDAQTLYQRLVFRHKLYQLREER--------DMKPETFANLVSAVLYEKRFGPYFCQPVIAGLDDDDKPFICTMDFIGAKELAKDFVVAGSASESLYGACEAFFKPDMEPDELFEVVSQALLASVDRDCLSGWGGHIYIVTPDDIKEKILKGRMD 204          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|1026758487|gb|OAE20553.1| (hypothetical protein AXG93_3873s1110 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 134.42 bits (337), Expect = 3.039e-35
Identity = 72/221 (32.58%), Postives = 121/221 (54.75%), Query Frame = 0
Query:   45 QGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
             G + +A+ GK C  +A DRR+G + Q +      DY           QRI +++ +L +G+ G        +  L+    L  +R E++        + P+  + LVS MLY  RF      PI+AGL  D  P +CT D +GA  +  DFV  G++S+++ GACE++Y+P+LE D L ++  + L + ++RDC SG+G + +++TP+ +    ++GRMD
Sbjct:    7 NGSALVAMLGKNCFAIASDRRLGVNFQTIA----TDY-----------QRIFEIHEKLYIGLSGLGTDVQTLYQRLKFRHKLYQLREERN--------MRPETFASLVSAMLYEKRFGPYFCEPIIAGLSEDNVPFICTTDLIGAKQYSSDFVVSGTASESLYGACESMYKPDLEPDDLFEVIAQALISSVDRDCISGWGGIVHIVTPDQVITKTLRGRMD 204          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|118487526|gb|ABK95590.1| (unknown [Populus trichocarpa])

HSP 1 Score: 133.65 bits (335), Expect = 5.423e-35
Identity = 73/223 (32.74%), Postives = 120/223 (53.81%), Query Frame = 0
Query:   43 KLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            +  G + +A+ GK C  +A DRR+G + Q +      D+           QRI K++ +L +G+ G    A   +  L     +  +R E+         + P+  + LVS +LY  RF      P++AGL+ D  P +CT D +GA    KDFV  GS+S+++ GACEA ++P++E D L ++  + L A ++RDC SG+G   Y++TP+ +    ++GRMD
Sbjct:    5 EYNGSAIVAMVGKNCFAIASDRRLGVNLQTVA----TDF-----------QRIYKIHDKLFVGLSGLGTDAQTLYQRLVFRHKMYQLREER--------DMKPETFANLVSAVLYEKRFGPYFCQPVIAGLDDDDKPFICTMDFIGAKELAKDFVVAGSASESLYGACEAFFKPDMEPDELFEVVSQALLASVDRDCLSGWGGHIYIVTPDDIKEKILKGRMD 204          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|902236678|gb|KNA24482.1| (hypothetical protein SOVF_015190 [Spinacia oleracea])

HSP 1 Score: 133.265 bits (334), Expect = 9.676e-35
Identity = 72/227 (31.72%), Postives = 121/227 (53.30%), Query Frame = 0
Query:   39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            ++  +  G + +A+ GK C  +  DRR+G   Q +      D+           QRI +++ RL +G+ G  + A   +  L     L  +R E+         + P+  + LVS +LY  RF      P++AGL  D  P +CT DS+GA    KDFV  G++S+++ GACE++Y+P++E + L +   + L+A ++RDC SG+G   Y++TP  +    ++GRMD
Sbjct:    1 MSIFEYNGSATVAMVGKNCIAIGSDRRLGVQLQTIA----TDF-----------QRIFQIHDRLFIGLSGLGSDAQTLYQRLVFRHKLYQLREER--------DMKPETFANLVSAILYEKRFGPYFCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVAGTASESLYGACESMYKPDMEPEELFETVSQALQASVDRDCLSGWGGHVYIVTPTEIKEHILKGRMD 204          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|575479770|ref|XP_006679179.1| (hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|328770084|gb|EGF80126.1| hypothetical protein BATDEDRAFT_88542 [Batrachochytrium dendrobatidis JAM81] >gi|1028572947|gb|OAJ41251.1| hypothetical protein BDEG_24883 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 133.265 bits (334), Expect = 9.676e-35
Identity = 72/224 (32.14%), Postives = 118/224 (52.68%), Query Frame = 0
Query:   42 VKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            ++  G + +A+AGK C  +A DRR G  A L +G ++              Q+I  +  +  LG+ G         D  R ++++  +  E+         I+PK  S +VS   Y  RF      PIVAGLE D TP +C+ D++G ++F KDFV  G++S  + G CE+L+ P+LE + L ++  + L   ++RD  SG+G + ++ITP  +    ++GRMD
Sbjct:    4 MEYNGSAIIAMAGKNCVAIAADRRFGVQA-LTLGTDF--------------QKIFPITDKTYLGLAGLATDVTTLKDRFRYKVNMYHLEEERE--------ISPKTFSHMVSSTQYEKRFGPYFVEPIVAGLEKDNTPFICSMDTIGCINFAKDFVVCGTASDQMNGMCESLWEPDLEPEELFEVISQALLNAIDRDAISGWGGIVHIITPTSVITRTLKGRMD 204          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|302764110|ref|XP_002965476.1| (hypothetical protein SELMODRAFT_266913 [Selaginella moellendorffii] >gi|302823097|ref|XP_002993203.1| hypothetical protein SELMODRAFT_272317 [Selaginella moellendorffii] >gi|300138973|gb|EFJ05723.1| hypothetical protein SELMODRAFT_272317 [Selaginella moellendorffii] >gi|300166290|gb|EFJ32896.1| hypothetical protein SELMODRAFT_266913 [Selaginella moellendorffii])

HSP 1 Score: 132.88 bits (333), Expect = 1.238e-34
Identity = 74/221 (33.48%), Postives = 123/221 (55.66%), Query Frame = 0
Query:   46 GGSAL-ALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
             GSAL A+ GK C  +A DRR+G + Q +      D+           QRI K++ +L +G+ G  +     +  L+   +L  ++ E+         + P+  S  VS  LY  RF      P++AGL AD  P +CT DS+GA+   KDFV  G++S+++ GACE++Y+P++E + L +   + L + ++RDC SG+G + Y++TP+ +    ++GRMD
Sbjct:    7 NGSALVAMVGKDCFAIASDRRLGVNFQTIA----TDF-----------QRIFKIHDKLYVGLAGLASDVQTLYQRLKYRHNLFQLQEERD--------MRPETFSNFVSATLYEKRFGPYFVQPLIAGLGADNKPYICTMDSIGAIEHSKDFVVGGTASESLYGACESMYKPDMEPEDLFETISQALISSVDRDCLSGWGGIVYVVTPDQVIVRTLKGRMD 204          
BLAST of EWM29521.1 vs. NCBI_GenBank
Match: gi|731320011|ref|XP_010670575.1| (PREDICTED: proteasome subunit beta type-3-A [Beta vulgaris subsp. vulgaris] >gi|870866000|gb|KMT17029.1| hypothetical protein BVRB_2g042300 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.109 bits (331), Expect = 2.116e-34
Identity = 74/227 (32.60%), Postives = 121/227 (53.30%), Query Frame = 0
Query:   39 VNAVKLQGGSALALAGKKCAVLAMDRRVGTSAQLLVGGEWNDYEDEKEGNVKGSQRILKVNGRLLLGMVGYDAMAGAFFDMLRAELHLRSMRLEQHALGECATTITPKALSLLVSHMLY-YRFRGSGTAPIVAGLEADGTPVLCTQDSLGAVSFQKDFVALGSSSKAVLGACEALYRPNLEGDALLQLACRCLRAGLERDCASGYGLVAYLITPEGMARTCVQGRMD 264
            ++  +  G + +A+ GK C  +A DRR+G   Q +      D+           QRI +++ RL +G+ G    A   +  L     L  +R E+         + P+  + LVS +LY  RF      P++AGL  D  P +CT DS+GA    KDFV  G++S+++ GACE++Y+P++E + L +   + L+A ++RDC SG+G   YL+TP  +    ++GRMD
Sbjct:    1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIA----TDF-----------QRIYQIHDRLFIGLSGLGTDAQTLYQRLVFRHKLYHLREER--------DMKPETFANLVSAILYEKRFGPYFCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVAGTASESLYGACESMYKPDMEPEDLFETVSQALQASIDRDCLSGWGGHVYLVTPTEIKERILKGRMD 204          
The following BLAST results are available for this feature:
BLAST of EWM29521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112092|gb|EWM29521.1|0.000e+0100.00Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
gi|585112093|gb|EWM29522.1|4.555e-12997.88Proteasome, subunit alpha/beta [Nannochloropsis ga... [more]
gi|299116535|emb|CBN74723.1|4.207e-4242.73proteasome beta subunit [Ectocarpus siliculosus][more]
gi|566156867|ref|XP_002300970.2|2.880e-3533.18Proteasome subunit beta type 3-2 family protein [P... [more]
gi|1026758487|gb|OAE20553.1|3.039e-3532.58hypothetical protein AXG93_3873s1110 [Marchantia p... [more]
gi|118487526|gb|ABK95590.1|5.423e-3532.74unknown [Populus trichocarpa][more]
gi|902236678|gb|KNA24482.1|9.676e-3531.72hypothetical protein SOVF_015190 [Spinacia olerace... [more]
gi|575479770|ref|XP_006679179.1|9.676e-3532.14hypothetical protein BATDEDRAFT_88542 [Batrachochy... [more]
gi|302764110|ref|XP_002965476.1|1.238e-3433.48hypothetical protein SELMODRAFT_266913 [Selaginell... [more]
gi|731320011|ref|XP_010670575.1|2.116e-3432.60PREDICTED: proteasome subunit beta type-3-A [Beta ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1107rna1107Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications