rna1097, rna1097 (mRNA) Nannochloropsis gaditana

Overview
Namerna1097
Unique Namerna1097
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length213
Alignment locationCM002456.1:1173299..1174438 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g70.8617.mrna
Orig protein idgnl|cribi|Naga_100006g70.8617
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1173299..1174438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g70gene1057Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1097rna1097-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29528.1cds1096Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1097 ID=rna1097|Name=rna1097|organism=Nannochloropsis gaditana|type=mRNA|length=213bp
ATGGAGCAAGCGCGTGCGGGCCACTTGATAACAACTCAGGCTAAGCAATG
TTTAATGGTACAGAATGATTGCAAATACACGGCAAGCAGGCAGAAATCGA
TTAAGTTTTCCTGGGACGCCGCAGCTTTTCCTCAAAGGGATGCCAACACG
ACGGAACACATCGTGGACCCGTGCCATATCGACGACCTTACCTGGTTGCT
GGTCAGGGAGTAA
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protein sequence of rna1097

>rna1097-protein ID=rna1097-protein|Name=rna1097|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MRQRTIIIPTTLWTLVMQLVVGNCAATRCSSSCFLSSSALFSSVHGGRKV
PLHQQFRLHSRNMMAYSNKHGSTGRRRVKDVLRPPLPPQTAVQGNKWAEE
ISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVL
KTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDG
RQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKP
VMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWAS
FTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKT
VPFLGLFVYMLWRPPLLSQQSEEPGRQRG
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mRNA from alignment at CM002456.1:1173299..1174438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1097 ID=rna1097|Name=rna1097|organism=Nannochloropsis gaditana|type=mRNA|length=1140bp|location=Sequence derived from alignment at CM002456.1:1173299..1174438+ (Nannochloropsis gaditana)
ATGAGACAAAGAACGATAATCATTCCAACGACTTTGTGGACTTTGGTTAT
GCAATTGGTGGTCGGAAACTGTGCAGCAACACGTTGTTCCTCTTCGtgct
tcctttcttcaaGTGCAttgttttcctccgtccatggcggaagaaaggTA
CCTTTGCATCAACAATTCCGACTTCATAGTCGTAATATGATGGCTTATAG
CAACAAGCATGGCTCCACCGGAAGACGTCGAGTGAAGGATGTGCTACGGC
CTCCGTTACCTCCACAAACCGCGGTCCAAGGGAACAAATGGGCGGAGGAA
ATCAGCCCTGCGAGCTTGAAACAAAAGTTTACGCAGCAACCTTTCCAACG
AGTGATACCACTTATCACGCTAGTGACCTTCGTGGGATATGTCTTTGTCT
CTCCCTATGCCCCTGGGTCAGTCCCCAACATGCTGGACAGCGCCGTTCTC
AAGACCGTGGGTGGGCTCACGCTCAATTACTTCAATGTACTGCCTactct
cctccctgacctTGCTCCTCGTTTTTCTCCTGTTATGGAGGGGGTGTTCA
ATCTTTTACTGGCGTACGCTGCATTGCTCAGCGGCTTTTTGGTCGACGGC
CGCCAGGCTGCAGATCCTGCCTCTGTCAACTCGGACAGTCCAGGCGGTAT
caattttttcttccctttcgcTGCAGCGGGCCTGGCGCTGACGAACACCG
CTTTCTTGCCTTACCTTATCCTGCGTCCGCTGCACAAGGTGGACAAACCT
GTCATGCAAGAGGAGGTACCTGAAATCGAGCTGAAGCTTGGCGAGTCGAA
ACCTTTGTTGTCCGTGTACGGGGTGGCCGGCTTGTACAGTATCTGGTGGG
CATTTTTCGGTCGTCCAGAATTCGGAGGCCTTACAGAACGCTGGGCGAGC
TTCACGGACCTGGTCTCTTCGGACAGATTGATGTTCGCCTTCTCGGTCGA
AGCCGTCCTGTATTGGATCTTTCAAGGCTGGCTGGTCGATGATGACATGC
GTCGGCGCGCCGCAGTCTCTGAAGGCGTGGTTCCTTGGATCGCAAAAACC
GTGCCCTTTTTGGGACTCTTTGTGTACATGCTCTGGCGGCCCCCATTGTT
GAGCCAACAAAGCGAGGAACCCGGCCGACAAAGGGGCTGA
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Coding sequence (CDS) from alignment at CM002456.1:1173299..1174438+

>rna1097 ID=rna1097|Name=rna1097|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002456.1:1173299..1174438+ (Nannochloropsis gaditana)
ATGAGACAAAGAACGATAATCATTCCAACGACTTTGTGGACTTTGGTTAT
GCAATTGGTGGTCGGAAACTGTGCAGCAACACGTTGTTCCTCTTCGtgct
tcctttcttcaaGTGCAttgttttcctccgtccatggcggaagaaaggTA
CCTTTGCATCAACAATTCCGACTTCATAGTCGTAATATGATGGCTTATAG
CAACAAGCATGGCTCCACCGGAAGACGTCGAGTGAAGGATGTGCTACGGC
CTCCGTTACCTCCACAAACCGCGGTCCAAGGGAACAAATGGGCGGAGGAA
ATCAGCCCTGCGAGCTTGAAACAAAAGTTTACGCAGCAACCTTTCCAACG
AGTGATACCACTTATCACGCTAGTGACCTTCGTGGGATATGTCTTTGTCT
CTCCCTATGCCCCTGGGTCAGTCCCCAACATGCTGGACAGCGCCGTTCTC
AAGACCGTGGGTGGGCTCACGCTCAATTACTTCAATGTACTGCCTactct
cctccctgacctTGCTCCTCGTTTTTCTCCTGTTATGGAGGGGGTGTTCA
ATCTTTTACTGGCGTACGCTGCATTGCTCAGCGGCTTTTTGGTCGACGGC
CGCCAGGCTGCAGATCCTGCCTCTGTCAACTCGGACAGTCCAGGCGGTAT
caattttttcttccctttcgcTGCAGCGGGCCTGGCGCTGACGAACACCG
CTTTCTTGCCTTACCTTATCCTGCGTCCGCTGCACAAGGTGGACAAACCT
GTCATGCAAGAGGAGGTACCTGAAATCGAGCTGAAGCTTGGCGAGTCGAA
ACCTTTGTTGTCCGTGTACGGGGTGGCCGGCTTGTACAGTATCTGGTGGG
CATTTTTCGGTCGTCCAGAATTCGGAGGCCTTACAGAACGCTGGGCGAGC
TTCACGGACCTGGTCTCTTCGGACAGATTGATGTTCGCCTTCTCGGTCGA
AGCCGTCCTGTATTGGATCTTTCAAGGCTGGCTGGTCGATGATGACATGC
GTCGGCGCGCCGCAGTCTCTGAAGGCGTGGTTCCTTGGATCGCAAAAACC
GTGCCCTTTTTGGGACTCTTTGTGTACATGCTCTGGCGGCCCCCATTGTT
GAGCCAACAAAGCGAGGAACCCGGCCGACAAAGGGGCTGA
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Synonyms
Publications