EWM29528.1, cds1096 (CDS) Nannochloropsis gaditana

Overview
NameEWM29528.1
Unique Namecds1096
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1173299..1174438 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29528.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g70.8617.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1173299..1174438 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|585112099|gb|EWM29528.1| (hypothetical protein Naga_100006g70 [Nannochloropsis gaditana])

HSP 1 Score: 771.926 bits (1992), Expect = 0.000e+0
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0
Query:    1 MRQRTIIIPTTLWTLVMQLVVGNCAATRCSSSCFLSSSALFSSVHGGRKVPLHQQFRLHSRNMMAYSNKHGSTGRRRVKDVLRPPLPPQTAVQGNKWAEEISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQSEEPGRQRG 379
            MRQRTIIIPTTLWTLVMQLVVGNCAATRCSSSCFLSSSALFSSVHGGRKVPLHQQFRLHSRNMMAYSNKHGSTGRRRVKDVLRPPLPPQTAVQGNKWAEEISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQSEEPGRQRG
Sbjct:    1 MRQRTIIIPTTLWTLVMQLVVGNCAATRCSSSCFLSSSALFSSVHGGRKVPLHQQFRLHSRNMMAYSNKHGSTGRRRVKDVLRPPLPPQTAVQGNKWAEEISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQSEEPGRQRG 379          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|585112234|gb|EWM29660.1| (hypothetical protein Naga_100112g16 [Nannochloropsis gaditana])

HSP 1 Score: 183.726 bits (465), Expect = 2.803e-49
Identity = 109/271 (40.22%), Postives = 154/271 (56.83%), Query Frame = 0
Query:  105 SLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPG---GINFFFPFAAAGLALTNTAFLPYLILRP--LHKVDKPVMQEEVPEIELKLGESK-PLLSVYGVAGLYSIWWAFFGRPEFGG--LTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLL 367
            SL  +   +P ++ +PL   + +  +VF+S  APG     LD A    V  L+LN++ V+P+L P  +P   P +EG+FNLLLA+AAL SGF+VDG+ A +         G     N F P+      LTN  +LPYL+LR       D+P  +         LGESK P L   GV GL S+ WA   R E  G  L+ERW SF  ++++DRL F+F+V+ + +W+FQGWL+DDD+ RR      +   + K +PFLGL  Y++ RPPLL
Sbjct:  266 SLIGRLLDEP-RKAVPLAAFIFYCWFVFLSTVAPGPNALSLDPATWAEVRDLSLNFWLVMPSLAPQSSPVLHPCLEGLFNLLLAWAALFSGFMVDGKVAGESTQARKTGEGRGGAKNAFLPYVLGMQLLTNAVYLPYLVLRKNVWKPADEPAGEGYTLTKAEALGESKIPPLVFIGV-GLLSLAWAGLARGEVYGVELSERWRSFVQILTTDRLTFSFAVDLLYFWVFQGWLLDDDIERRGGEVGKISLSLFKAIPFLGLGAYLMTRPPLL 534          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|1210229271|dbj|BAZ48292.1| (conserved hypothetical membrane protein [Nostoc sp. NIES-4103])

HSP 1 Score: 163.696 bits (413), Expect = 2.048e-44
Identity = 99/275 (36.00%), Postives = 150/275 (54.55%), Query Frame = 0
Query:  101 ISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILR---PLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQSE 372
            I   S  QK T     ++    T + +VGY+ +S   PG     + S  L+ + GL+LN++ VLP + P++AP  +P +EG+FN+++ +A L  GF++DGR    P               PF      LTN  FLP+L LR   P    D     E       K+ ES+ L +  G+  + S+ W  F RPE+G LT R+++  +L+S+DRL ++F ++  ++W+FQ WLV DDM RR   +  V+ W+ + VPFLGL VY+  RPPL  QQ +
Sbjct:   10 IKTFSFPQKDTSVTLSKIFLWSTWLIYVGYLLLSDLPPGLSLLHITSETLQEIWGLSLNFWLVLPIVSPNVAPVLNPALEGLFNIVVTWAILFWGFVIDGRNQRFPI-------------IPFLIGTALLTNVFFLPWLALRQPNPQPPTDSLTFVE-------KIAESRILPAFLGMIFVVSLVWGAFARPEYGDLTTRFSALLELLSTDRLAYSFLIDFFVFWLFQSWLVKDDMARRNWCNPTVL-WVVRLVPFLGLVVYLWRRPPLAVQQMK 263          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|397568380|gb|EJK46109.1| (hypothetical protein THAOC_35242 [Thalassiosira oceanica])

HSP 1 Score: 168.318 bits (425), Expect = 3.853e-43
Identity = 111/272 (40.81%), Postives = 155/272 (56.99%), Query Frame = 0
Query:  105 SLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNM----LDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWI---AKTVPFLGLFVYMLWRPPLLSQ 369
            ++K KF  +P  R IPL   V +VGY+F    A G +P +    L+    + V  L+LN+F V P L    AP   P +EGVFNLLL++AAL +GFL D R+         D P  + F  P       LT+   LPYL LR     ++   ++   E++ K+ E +PL  + G  G  SIWW  FGRPEFG L+ER+ASF DL+S DR+  +F V+ V++ +FQ W VDDD++RR  + +  +P +   AK VPF GL  Y+  RPPL S+
Sbjct:  348 TVKAKFVAEPV-RFIPL---VIWVGYMFELFIADGPLPGVNALALEQRTWEEVRDLSLNFFLVSPILQLPFAPTVHPCLEGVFNLLLSWAALFAGFLSDERK---------DKPNLLPFG-PMLVGMQFLTSGFLLPYLFLRTPETSEEVYREDIDGELQAKVAEWRPLGPMLGSVGSLSIWWFLFGRPEFGELSERYASFMDLLSIDRVGSSFLVDLVIFAVFQSWFVDDDLQRR-GIGKDELPLLRNTAKYVPFFGLASYLTVRPPLASR 604          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|917774367|ref|WP_052288308.1| (hypothetical protein [Lyngbya confervoides])

HSP 1 Score: 152.14 bits (383), Expect = 5.076e-40
Identity = 97/281 (34.52%), Postives = 146/281 (51.96%), Query Frame = 0
Query:   88 PQTAVQGNKWAEEISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSA--VLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPL 366
            P TA Q    +  ISP S        P+QR    +  V +VGY+ +S   PG  P++L ++   L+  G L+LN++ VLP L P  AP   P +EG+FN+++ +  L  GF ++GRQ   P               PF      LTN  +LP+L LR   + D+P       E    + ES+       +  L +I W  +GR +FG +++RW     +V SDRL ++F ++ +++W+FQGWLV DDM RR    + V  W A+ +P  GL +Y L RPP+
Sbjct:   10 PATASQPA--SANISPVSEAASTHSSPWQRGGVWLAWVVYVGYLLLSDLPPG--PSLLHTSPDTLREAGALSLNFWFVLPALFPAQAPTLHPALEGLFNVVVTWGLLFWGFAIEGRQQRVP-------------MLPFLIGTAFLTNVFYLPWLGLRQSRR-DRPTRPLNRLE---TITESRAYPIALMIILLAAIAWGLWGRADFGSISDRWTDLVQIVQSDRLAYSFWIDLLVFWLFQGWLVPDDMARRQW-QDPVALWSARLIPAFGLVIYFLRRPPI 268          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|746959185|gb|KIF16724.1| (hypothetical protein QP59_26885 [Aphanocapsa montana BDHKU210001] >gi|746986039|gb|KIF41731.1| hypothetical protein QQ91_19835 [Lyngbya confervoides BDU141951])

HSP 1 Score: 149.058 bits (375), Expect = 5.365e-39
Identity = 92/268 (34.33%), Postives = 141/268 (52.61%), Query Frame = 0
Query:  101 ISPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSA--VLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPL 366
            +SP S        P+QR    +  V +VGY+ +S   PG  P++L ++   L+  G L+LN++ VLP L P  AP   P +EG+FN+++ +  L  GF ++GRQ   P               PF      LTN  +LP+L LR   + D+P       E    + ES+       +  L +I W  +GR +FG +++RW     +V SDRL ++F ++ +++W+FQGWLV DDM RR    + V  W A+ +P  GL +Y L RPP+
Sbjct:    1 MSPVSEAASTHSSPWQRGGVWLAWVVYVGYLLLSDLPPG--PSLLHTSPDTLREAGALSLNFWFVLPALFPAQAPTLHPALEGLFNVVVTWGLLFWGFAIEGRQQRVP-------------MLPFLIGTAFLTNVFYLPWLGLRQSRR-DRPTRPLNRLE---TITESRAYPIALMIILLAAIAWGLWGRADFGSISDRWTDLVQIVQSDRLAYSFWIDLLVFWLFQGWLVPDDMARRQW-QDPVALWSARLIPAFGLVIYFLRRPPI 248          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|497242530|ref|WP_009556752.1| (hypothetical protein [Oscillatoriales cyanobacterium JSC-12] >gi|410712338|gb|EKQ69844.1| hypothetical protein OsccyDRAFT_2489 [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 149.058 bits (375), Expect = 6.875e-39
Identity = 86/240 (35.83%), Postives = 131/240 (54.58%), Query Frame = 0
Query:  125 VTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRP 364
            + +VGY+ +S   PG+     +   L+T   L+LN++ VLP L P+LAP  +P +EG+FN+++A+  L  GFL+DGR    P               PF      LTN  +LP+L LR   + +       +  +E +  ES+ +     +    S+ WA F RPEF   + RW S   L++ DRL ++F  +  ++W+FQ WLV DDM+RR      ++ WIA+ VPF GL +Y+LWRP
Sbjct:   31 IGYVGYLLLSDLPPGNSLLHSEPETLQTAIALSLNFWFVLPVLFPNLAPVLNPALEGLFNIVVAWGLLFWGFLLDGRNQRVP-------------MIPFLLGTALLTNVFYLPWLGLR---QPNPAPATTALTRLE-RFAESRMIPIALSLVFGASLAWAAFARPEFSTWSNRWNSLLTLITGDRLAYSFWFDLWVFWVFQAWLVPDDMQRRNG-HNSILIWIARLVPFFGLVIYLLWRP 252          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|1011382362|ref|WP_062295112.1| (hypothetical protein [Nostoc piscinale] >gi|930352131|gb|ALF54576.1| hypothetical protein ACX27_19760 [Nostoc piscinale CENA21])

HSP 1 Score: 148.673 bits (374), Expect = 8.581e-39
Identity = 84/249 (33.73%), Postives = 138/249 (55.42%), Query Frame = 0
Query:  125 VTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQSEE 373
            + +VGY+ +S   PG     + +  L+ +  L++N++ VLP + P  AP  +P +EG+FN+++++  L  GF++DGR    P                F      LTN  FLP+L LR   + +    +  +  +E K+GES+ L  V     + S+ WA  GRPE+G +T RW    +L+ SDRL ++F V+ +++W+FQ WLV DDM RR   +E ++ W+ + +PF GL +Y+  RP L  ++ E 
Sbjct:   30 LVYVGYLLLSDIPPGESLLHITTKTLEEIFNLSMNFWLVLPIIFPTEAPVSNPTLEGLFNIVMSWGLLFWGFIIDGRNQRFPI-------------ITFLLGTALLTNVFFLPWLGLR---QANPQAPKNALTFVE-KVGESRVLPLVLAGVFVVSLSWAVLGRPEYGDITTRWQGLLELLFSDRLAYSFVVDMLVFWLFQSWLVKDDMARRQWNNEKIL-WLVRLIPFWGLIIYLWLRPSLKLEEQEN 260          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|1056306743|ref|WP_067764201.1| (hypothetical protein [Nostoc sp. NIES-3756] >gi|953508955|dbj|BAT51643.1| hypothetical protein NOS3756_05700 [Nostoc sp. NIES-3756])

HSP 1 Score: 147.132 bits (370), Expect = 3.414e-38
Identity = 91/271 (33.58%), Postives = 140/271 (51.66%), Query Frame = 0
Query:  102 SPASLKQKFTQQPFQRVIPLITLVTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPLLSQQSE 372
            SP  LK+  +     R++     + ++GY+ +S   PG     + S  L+ +  L+ N++ VLP + P  AP  +P +EG+FN+++ +  L  GF++DGR                    PF      LTN  FLP+L LR       P +      I  K+GES+   SV  +  +    WA F RPE+G L  RW +  +L+ +DRL ++F ++ +++W+FQ WLV DDM RR   +E V+ WI + VPF GL +Y   RP L   QS+
Sbjct:    4 SPNFLKKDISLT-LSRILIWTVWLIYIGYLLLSDLPPGLSLLHITSQTLQEIIDLSWNFWFVLPLISPTEAPVNNPALEGLFNIVVTWGLLFWGFVIDGRNQRFSI-------------IPFLIGTAFLTNLFFLPWLGLRQ----PNPQVSTNDLTIAEKVGESRIFTSVLALVFVLCCIWAGFARPEYGDLPTRWEALLNLLFTDRLAYSFLIDMLVFWLFQSWLVKDDMARRQWHNEQVL-WIVRLVPFWGLIIYFWQRPSLTIAQSK 255          
BLAST of EWM29528.1 vs. NCBI_GenBank
Match: gi|740238361|ref|WP_038079474.1| (hypothetical protein [Tolypothrix bouteillei] >gi|744451668|gb|KIE12337.1| hypothetical protein DA73_0212400 [Tolypothrix bouteillei VB521301])

HSP 1 Score: 145.591 bits (366), Expect = 1.469e-37
Identity = 85/242 (35.12%), Postives = 131/242 (54.13%), Query Frame = 0
Query:  125 VTFVGYVFVSPYAPGSVPNMLDSAVLKTVGGLTLNYFNVLPTLLPDLAPRFSPVMEGVFNLLLAYAALLSGFLVDGRQAADPASVNSDSPGGINFFFPFAAAGLALTNTAFLPYLILRPLHKVDKPVMQEEVPEIELKLGESKPLLSVYGVAGLYSIWWAFFGRPEFGGLTERWASFTDLVSSDRLMFAFSVEAVLYWIFQGWLVDDDMRRRAAVSEGVVPWIAKTVPFLGLFVYMLWRPPL 366
            + ++GY+ +S   PG     +     +    L+LN++ V+P L P  AP  +P +EG+FN+++ +  L  GFLVDGR    P               PF      LTN  +LP+L +R   + +    ++ +  +E K+ ES+    V     + S+ WA   RPEFG LT RW S   ++S+DRL ++F ++ V++WIFQ WLV DDM RR    +  + WI + VPF+GL V++L RP L
Sbjct:   33 IIYIGYLLLSDLPPGLSVLHIQPKTFQEALDLSLNFWFVMPLLSPSTAPVINPALEGLFNIVITWGLLFWGFLVDGRNQRFPM-------------LPFLIGTALLTNVFYLPWLAIR---QPNTQPPKDSLNTLE-KIAESRAFPLVLTGVVVASLAWAMLARPEFGNLTARWTSLIKILSTDRLAYSFLIDFVVFWIFQSWLVPDDMARRHW-QDPTILWIVRFVPFVGLVVFLLRRPSL 256          
The following BLAST results are available for this feature:
BLAST of EWM29528.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112099|gb|EWM29528.1|0.000e+0100.00hypothetical protein Naga_100006g70 [Nannochlorops... [more]
gi|585112234|gb|EWM29660.1|2.803e-4940.22hypothetical protein Naga_100112g16 [Nannochlorops... [more]
gi|1210229271|dbj|BAZ48292.1|2.048e-4436.00conserved hypothetical membrane protein [Nostoc sp... [more]
gi|397568380|gb|EJK46109.1|3.853e-4340.81hypothetical protein THAOC_35242 [Thalassiosira oc... [more]
gi|917774367|ref|WP_052288308.1|5.076e-4034.52hypothetical protein [Lyngbya confervoides][more]
gi|746959185|gb|KIF16724.1|5.365e-3934.33hypothetical protein QP59_26885 [Aphanocapsa monta... [more]
gi|497242530|ref|WP_009556752.1|6.875e-3935.83hypothetical protein [Oscillatoriales cyanobacteri... [more]
gi|1011382362|ref|WP_062295112.1|8.581e-3933.73hypothetical protein [Nostoc piscinale] >gi|930352... [more]
gi|1056306743|ref|WP_067764201.1|3.414e-3833.58hypothetical protein [Nostoc sp. NIES-3756] >gi|95... [more]
gi|740238361|ref|WP_038079474.1|1.469e-3735.12hypothetical protein [Tolypothrix bouteillei] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1097rna1097Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications