rna1095, rna1095 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1095
Unique Name	rna1095
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2216
Alignment location	CM002456.1:1170689..1172539 +

Link to JBrowse

Properties


Property Name	Value
Product	trna nucleotidyltransferase
Orig transcript id	gnl\|cribi\|Naga_100006g72.8666.mrna
Orig protein id	gnl\|cribi\|Naga_100006g72.8666
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1170689..1172539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g72	gene1055	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1095	rna1095-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29577.1	cds1094	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1170689..1172539+
coding sequence from alignment at CM002456.1:1170689..1172539+

mRNA sequence

>rna1095 ID=rna1095|Name=rna1095|organism=Nannochloropsis gaditana|type=mRNA|length=2216bp
CTGTAGTAGCTAGGAGGTTGCCGCTCGTATTTCTGCCGCCGCCGACAAAC
TTATGGTCAGTATCGTCCACATCACTGACATTTTCAACCCATCTGTCATG
TGATAGTATGTCTATCAGCGTCGTCTGCCGCTTTGAAATAAGGTTTCATT
CGACTTCACGTCGGCCTTCGACAGCTGTAGCACGGCCGCGTAATCTTCAA
AAGGGCTCAACCACAACACAGACTGAGTGGGCATGGTCAGACGTAAGCAG
CATATTGTACACGAGCACAGAGTATGCTCAGAATTTTGTACTGTTCAAAG
CGTGGAAGAGTGGGAGCCAAACTCCTATTGCTTGTTTGCCCAGGAAGCGG
CTTCTTCGTGACGTCATTCATTCCTGCTGAAGCCTGATCATCCGACACGC
ACGTCTCACGCTAATGATGTCTGTTGGGCATTTTGGTCACATGCTGACAA
ACAGGTGGCATGATTCGCCTTCTCGCGGCGGTTTCGAGCTTCCGGCCCCT
CTCGCAGAGATGCATAGGTCGTCTTTTTTCCTCCACAGCGCCTCACGGCA
CCTCGACCGATTCATGGGATTATGATGTCATCATTTTAGGTGGCGGTATC
GTGGGAGCCTCCTTGGCATGTAGTTTGGCAGAGAACGTCGGCCAGCGTCA
TGGTATGAAGATCGCGCTGCTTGAAATTCGCCCTCCTCCTCCCCTTGCAG
CCTGCTTAGCCCCTGACCGTCTTCCTGACCCTCGAGTTTATGCGTTGGCA
CCTGCCAGCGTGGCCTTTTTGGAGTCCTTGGGAGCGTGGCAGTTGATAAA
AGATAGAAAGAGAGATTATCAATACATGCAGGTCTGGGAGGGCGGGGGAA
GTGGGTCGATTCGATTCGATGCCGCCAAAGCCAAAGTGATGGGCTTAGGG
AGCACGAGGGCGGAGGGAAGCAACGGCGAAGGAAAGGAAAGGAAGAAGCT
GGGCACCATGGCAGAGAATAGCACCCTGCAAGCTGCATTATTTCAGTGCA
TGATATCCCTTCAAGCCCAGGGGCTCTTGGAGGTTCTCTGTCCTGTGCAG
GTCGAGGCCATAGCATTCGACACGTCAGGGACAGACCCTACGGGGCCCGC
GCGGGTGACATGGGCGGGCAAAGACGGCGTGAGAAGCCAGGTGACGACCC
GCTTGTTGGTGGGCGCGGATGGGGCGGCGTCCAGGGTGAAAAAAGCGCGG
GGCCTCCCGTCGTGGGGGTGGGACTACGCGCAACGAGCCGTCGTCGCAAC
GGTCTCACTAGACGAGCAGGCCGACGCCGCAGACGCGCCGTCACCGAGAC
CTTCAACCACACTAAGTGCCAACAAATTAAGCCACAGTAGCAGCTCCCCG
GCAACAGCCTGGCAGACCTTTCTTCCGCAGGGCCCTCTGGCCTTCCTCCC
CCTGTGGGGTCCTTACCACTCCATCGTCTGGTCGACGACGCCCGCCGAGG
CCGATCGCCTGAAAGCGCTCCCTCGGGAAGCCTTCCTGGCCGAGCTCAAC
GCGAAGCTCCAGTGTCCGATTGGCCTGCTCGACCCTCCCTCGTTCCCTTC
TTACGTCCCTCAGCCCCTGGTCAAGGCGCTCGTAGGGGCCCACCACCTGG
TGGAGAGTGTCGTGGTCAGCGCGGCGCTCAGCCAAGGTTTCCACGTCGCC
CCCATCGTTCGCGACGTATGCGGCCCCCGGCTTTCATTCGACCTGCGCGC
TGAGCACGCCAGCGCCTATGTGGGCGCACGAGCTGCATTGGTGGGCGACG
CGGCGCACACCATCCACCCGATGGCCGGTCAAGGCCTGAACCTGGGGCTC
GCGGACGCCATGGCCCTCTCCACCCTGATCGAAGCCGGTGTGGTGGAGGG
GCAAGATGTGGGGAGTCCACTCTTCCTCCGCCGCTACCAAAATGCACGGC
AGGCGGCGAATCTAGGTATGCTGGGCGGGCTGACGGCCCTGCACGGCCTC
TTCGGGCGGAAGGAAGGGTCGTGGCGCTGGCTACGCAACGTGGGCCTCGG
GACTTTGAACGCCCTGGACCCGGTTAAGGCCAAGATGGCGGAGGTGGCCA
TGGGTGTGAACAGCGGGGGGGGCAGACAAGGCATGTGACTGACAGGCAAG
GGCGGCGGGGCGAGTGTACAGTAGAAAGGAGAAGCACGGGGTCGGACACC
TCAGATTGCCCAAGCGAGAAAAACAGATTACAAGCAAGTCAGACGGTATG
GTCACATGATGATTTT

protein sequence of rna1095

>rna1095-protein ID=rna1095-protein|Name=rna1095|organism=Nannochloropsis gaditana|type=polypeptide|length=616bp
MVGSNPTATELPIITLTEVESHLFGLLNEAAAQVGQGTVLRVAGGWVRDK
LLGKESDDVDIALDNVSGAAFAELLNKCLQDKGLETRSIGVIQANPEQSK
HLETARVLVLGHWIDFTNLRTETYRADSRIPEISFGTAVEDASRRDFTIN
SLFYNLQTESVEDWTGQGLADLLGPAGAIRTPLPALTTFLDDPLRLLRAI
RFSSRFALPLDANIVAAAENEELQHALFGKVSRERVGLEVEGMLSGKDAR
PAVALEMLVNLGLSDVVFWMPEEVKTRVLPVGGMEGWAQRGLANVRMANA
LLMEREKPGIWRDIAEGGTEGSMQGAQGSIQGFMQVVRVTSAYMQPRREH
RLCFLAAMLAPWEKHCMTEDRKPVEKKIGVVQWFVREALKHRAKDAEDLT
ALFGALDRCQSLTETMGAWSGRATGQEGRKVQKMRPGDACGTRDVERRRS
EEQDNRWRAARLEAGRLLRDLKGLWRTGLDVACARECASLKGGENPTTES
PSKRACDISVTLKALYEVQNRYQHTIDAVQGMGLDGIWNLRPLLDGKAVI
SNLGLPKGPLVGAVMDAQIEWQLQHPRGNAEELTKHLQTLVAERVIGTRD
EDGVTHKARKEKKTGK

mRNA from alignment at CM002456.1:1170689..1172539+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1095 ID=rna1095|Name=rna1095|organism=Nannochloropsis gaditana|type=mRNA|length=1851bp|location=Sequence derived from alignment at CM002456.1:1170689..1172539+ (Nannochloropsis gaditana)
ATGGTTGGCTCGAATCCTACAGCGACAGAGCTTCCTATTATCACTCTAAC
GGAGGTTGAGTCGCATTTGTTTGGTTTGCTCAACGAAGCAGCGGCGCAAG
TGGGGCAGGGCACTGTGCTGAGGGTGGCTGGGGGTTGGGTGCGTGACAAA
CtcctgggaaaggagagcgATGACGTGGACATCGCCCTAGATAACGTATC
TGGTGCTGCCTTTGCGGAATTGCTGAACAAATGCCTGCAGGACAAGGGAC
TGGAGACCCGATCCATTGGCGTCATTCAAGCGAATCCCGAGCAATCGAAG
CATCTGGAGACGGCGCGTGTACTTGTTCTGGGACACTGGATAGATTTTAC
CAATTTACGGACGGAGACATATCGAGCTGACAGTCGCATCCCTGAAATAA
GTTTTGGGACTGCTGTGGAAGATGCTTCTCGACGGGATTTTACCATTAAC
TCCTTGTTTTATAACCTCCAGACTGAATCGGTCGAGGATTGGACGGGCCA
AGGTTTGGCGGATCTCTTGGGGCCTGCTGGTGCTATTCGAACGCCTTTGC
CTGCGCTGACTACATTTTTGGATGATCCTCTGCGTTTGCTGCGCGCAATT
CGATTCTCGTCTCGATTCGCTTTGCCGTTGGATGCAAACATTGTGGCAGC
GGCCGAAAACGAGGAACTGCAACATGCCTTGTTCGGAAAAGTCAGTCGCG
AGCGTGTGGGGCTAGAAGTGGAAGGGATGCTTTCCGGAAAAGACGCGCGG
CCTGCCGTGGCGCTCGAGATGCTGGTGAATCTGGGGTTAAGCGACGTGGT
TTTTTGGATGCcagaggaggtgaagacgcGGGTGCTACCggtgggcggga
tggagggatgggcaCAAAGAGGGCTTGCTAACGTGCGGATGGCGAACGCG
TTGttgatggagagggaaaaaccGGGAATATGGCGCGACATTGCGGAAGG
CGGCACCGAGGGCAGCATGCAAGGCGCACAGGGCTCGATCCAGGGGTTTA
TGCAGGTTGTACGAGTCACCAGCGCCTACATGCAACCTCGACGAGAGCAT
CGCTTGTGTTTCCTCGCCGCGATGCTGGCGCCCTGGGAGAAGCACTGCAT
GACCGAGGATAGAAAACCTGTGGAGAAAAAGATAGGGGTCGTCCAATGGT
TCGTCCGGGAGGCCTTGAAGCACCGAGCcaaggacgcggaggaccTGACC
GCGTTGTTCGGCGCGCTCGATCGCTGTCAGTCTTTGACGGAAACCATGGG
GGCATGGTCAGGGCGGGCGACGGGGCAAGAAGGCCGCAAGGTACAGAAGA
TGAGGCCCGGGGACGCTTGCGGGACCCGGGACGTAGAGAGGCGCCGTTCC
GAGGAGCAGGACAATCGATGGAGGGCGGCAAGATTGGAAGCGGGAAGGTT
GCTAAGAGATCTGAAGGGCTTGTGGAGGACCGGGCTTGATGTGGCTTGTG
CGCGGGAGTGTGCGTCGttaaaaggaggggagaatcCGACCACAGAGTCT
CCCTCGAAGCGGGCATGCGACATCTCGGTCACCTTGAAAGCTCTTTATGA
AGTGCAAAACCGTTATCAGCATACCATCGACGCTGTGCAAGGCATGGGCT
TAGATGGAATTTGGAATTTGCGACCGTTACTGGACGGCAAGGCCGTCATC
AGCAATCTGGGCCTCCCGAAGGGCCCTCTCGTGGGTGCGGTCATGGACGC
TCAGATTGAGTGGCAGCTTCAACATCCACGTGGGAATGCGGAGGAGCTTA
CGAAGCATCTACAGACACTTGTGGCTGAAAGGGTGATAGGGACGAGAGAT
GAGGACGGTGTGACACAtaaggcgaggaaggagaaaaaaacaGGCAAGTA
A

Coding sequence (CDS) from alignment at CM002456.1:1170689..1172539+

>rna1095 ID=rna1095|Name=rna1095|organism=Nannochloropsis gaditana|type=CDS|length=1851bp|location=Sequence derived from alignment at CM002456.1:1170689..1172539+ (Nannochloropsis gaditana)
ATGGTTGGCTCGAATCCTACAGCGACAGAGCTTCCTATTATCACTCTAAC
GGAGGTTGAGTCGCATTTGTTTGGTTTGCTCAACGAAGCAGCGGCGCAAG
TGGGGCAGGGCACTGTGCTGAGGGTGGCTGGGGGTTGGGTGCGTGACAAA
CtcctgggaaaggagagcgATGACGTGGACATCGCCCTAGATAACGTATC
TGGTGCTGCCTTTGCGGAATTGCTGAACAAATGCCTGCAGGACAAGGGAC
TGGAGACCCGATCCATTGGCGTCATTCAAGCGAATCCCGAGCAATCGAAG
CATCTGGAGACGGCGCGTGTACTTGTTCTGGGACACTGGATAGATTTTAC
CAATTTACGGACGGAGACATATCGAGCTGACAGTCGCATCCCTGAAATAA
GTTTTGGGACTGCTGTGGAAGATGCTTCTCGACGGGATTTTACCATTAAC
TCCTTGTTTTATAACCTCCAGACTGAATCGGTCGAGGATTGGACGGGCCA
AGGTTTGGCGGATCTCTTGGGGCCTGCTGGTGCTATTCGAACGCCTTTGC
CTGCGCTGACTACATTTTTGGATGATCCTCTGCGTTTGCTGCGCGCAATT
CGATTCTCGTCTCGATTCGCTTTGCCGTTGGATGCAAACATTGTGGCAGC
GGCCGAAAACGAGGAACTGCAACATGCCTTGTTCGGAAAAGTCAGTCGCG
AGCGTGTGGGGCTAGAAGTGGAAGGGATGCTTTCCGGAAAAGACGCGCGG
CCTGCCGTGGCGCTCGAGATGCTGGTGAATCTGGGGTTAAGCGACGTGGT
TTTTTGGATGCcagaggaggtgaagacgcGGGTGCTACCggtgggcggga
tggagggatgggcaCAAAGAGGGCTTGCTAACGTGCGGATGGCGAACGCG
TTGttgatggagagggaaaaaccGGGAATATGGCGCGACATTGCGGAAGG
CGGCACCGAGGGCAGCATGCAAGGCGCACAGGGCTCGATCCAGGGGTTTA
TGCAGGTTGTACGAGTCACCAGCGCCTACATGCAACCTCGACGAGAGCAT
CGCTTGTGTTTCCTCGCCGCGATGCTGGCGCCCTGGGAGAAGCACTGCAT
GACCGAGGATAGAAAACCTGTGGAGAAAAAGATAGGGGTCGTCCAATGGT
TCGTCCGGGAGGCCTTGAAGCACCGAGCcaaggacgcggaggaccTGACC
GCGTTGTTCGGCGCGCTCGATCGCTGTCAGTCTTTGACGGAAACCATGGG
GGCATGGTCAGGGCGGGCGACGGGGCAAGAAGGCCGCAAGGTACAGAAGA
TGAGGCCCGGGGACGCTTGCGGGACCCGGGACGTAGAGAGGCGCCGTTCC
GAGGAGCAGGACAATCGATGGAGGGCGGCAAGATTGGAAGCGGGAAGGTT
GCTAAGAGATCTGAAGGGCTTGTGGAGGACCGGGCTTGATGTGGCTTGTG
CGCGGGAGTGTGCGTCGttaaaaggaggggagaatcCGACCACAGAGTCT
CCCTCGAAGCGGGCATGCGACATCTCGGTCACCTTGAAAGCTCTTTATGA
AGTGCAAAACCGTTATCAGCATACCATCGACGCTGTGCAAGGCATGGGCT
TAGATGGAATTTGGAATTTGCGACCGTTACTGGACGGCAAGGCCGTCATC
AGCAATCTGGGCCTCCCGAAGGGCCCTCTCGTGGGTGCGGTCATGGACGC
TCAGATTGAGTGGCAGCTTCAACATCCACGTGGGAATGCGGAGGAGCTTA
CGAAGCATCTACAGACACTTGTGGCTGAAAGGGTGATAGGGACGAGAGAT
GAGGACGGTGTGACACAtaaggcgaggaaggagaaaaaaacaGGCAAGTA
A

Synonyms

Publications