rna1094, rna1094 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1094
Unique Name	rna1094
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1122
Alignment location	CM002456.1:1168404..1170619 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquinone biosynthesis monooxygenase coq6
Orig transcript id	gnl\|cribi\|Naga_100006g73.8612.mrna
Orig protein id	gnl\|cribi\|Naga_100006g73.8612
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1168404..1170619 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g73	gene1054	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29523.1	cds1093	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1094	rna1094-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1168404..1170619-
coding sequence from alignment at CM002456.1:1168404..1170619-

mRNA sequence

>rna1094 ID=rna1094|Name=rna1094|organism=Nannochloropsis gaditana|type=mRNA|length=1122bp
ATGAATACTTGGCTTTCAACAAGGCACAACTTCTGGAGACTTTCACGTCC
CAAGAATAGGTTACATAGTTATCAGTGTTCTCGCTCCTTTGCGGCCTCTC
CGCCTGCCGAAAGCTTGGCACCCGCCGGGGGCCCGAGGGCATCAGCCCGC
CCTCCCCTGGGAGGGAATGCGTCCTCCAAAAAAATGTCGGTGTTGGATTT
GTTGCACAAAAAACGAAAAAATCAACGCATCTCTATGGTGACTGCGTACG
ACTACCCGTCGGCGTTGCACGTGGACCTGGCAGGCATCGACATTGTCTTG
TGCGGGGACTCGGTGGCCATGGTTGAGTTGGGTTACGACACTACCCAACC
GGTGGACATGGAGCAGATGCTGCACCATTGCAAAGCGGTGGCACGGGGTA
CAAAGCGGTCGTTGATCGTCGGCGATATGCCCTTTGGCTCCTACGAGGTG
TCCGAGGAGCTGGCAATGACCAACGCATTCCGTTTTATCAAGGAAGGGTT
CACAGACGCGGTCAAGATTGAAGGAGGGCGGGACAGGGCCCACATTGTTG
AGAAAATCGTCAAAAATGGAATTGCGGTCATGGGGCACGTAGGTCTAACC
CCTCAAGCCATCTCTGTACTGGGAGGCTTTCGCGCCCAGGGGCGTACGGC
TGTGAAAGCCCGAGGCCTGGTAGATGACGCGTTGGCCCTCCAAGAGGCCG
GCGCCTTCGCAGTGGTGGTGGAATGCGTCCCCGCCCCCGTCGCGCAAGCC
ATCACCGAGGCGCTGGAGATACCGACCATCGGGATCGGCGCCGGACCCCA
CACCTGCGGCCAGGTGCTCGTCTTCCACGACATGCTGGGCATGACTACCC
ACCCTCATCACGAGGCCTTCGTCCCTCGTTTCTGCAAACGTTACGCACAG
CTGGGGAACGTGATTCGGGAAGGGCTAGAATCCTTCAAACAGGACGTGGA
GGCCGGGACATTCCCCTCGGAAGCGTACTCCCCTTACAAAATGCCGGCCG
CAGAGCTCCGTGCCTTCCAAGCCCTGATGGCCCAGGACGCCACCAGCCGG
CAGACGCAGGCGCACAGGGCGGCAGAACGCTTGAAACAGAGCGATGAATA
CGAACAAATCAAGCTTTACTGA

protein sequence of rna1094

>rna1094-protein ID=rna1094-protein|Name=rna1094|organism=Nannochloropsis gaditana|type=polypeptide|length=542bp
MIRLLAAVSSFRPLSQRCIGRLFSSTAPHGTSTDSWDYDVIILGGGIVGA
SLACSLAENVGQRHGMKIALLEIRPPPPLAACLAPDRLPDPRVYALAPAS
VAFLESLGAWQLIKDRKRDYQYMQVWEGGGSGSIRFDAAKAKVMGLGSTR
AEGSNGEGKERKKLGTMAENSTLQAALFQCMISLQAQGLLEVLCPVQVEA
IAFDTSGTDPTGPARVTWAGKDGVRSQVTTRLLVGADGAASRVKKARGLP
SWGWDYAQRAVVATVSLDEQADAADAPSPRPSTTLSANKLSHSSSSPATA
WQTFLPQGPLAFLPLWGPYHSIVWSTTPAEADRLKALPREAFLAELNAKL
QCPIGLLDPPSFPSYVPQPLVKALVGAHHLVESVVVSAALSQGFHVAPIV
RDVCGPRLSFDLRAEHASAYVGARAALVGDAAHTIHPMAGQGLNLGLADA
MALSTLIEAGVVEGQDVGSPLFLRRYQNARQAANLGMLGGLTALHGLFGR
KEGSWRWLRNVGLGTLNALDPVKAKMAEVAMGVNSGGGRQGM

mRNA from alignment at CM002456.1:1168404..1170619-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1094 ID=rna1094|Name=rna1094|organism=Nannochloropsis gaditana|type=mRNA|length=2216bp|location=Sequence derived from alignment at CM002456.1:1168404..1170619- (Nannochloropsis gaditana)
CTGTAGTAGCTAGGAGGTTGCCGCTCGTATTTCTGCCGCCGCCGACAAAC
TTATGGTCAGTATCGTCCACATCACTGACATTTTCAACCCATCTGTCATG
TGATAGTATGTCTATCAGCGTCGTCTGCCGCTTTGAAATAAGGTTTCATT
CGACTTCACGTCGGCCTTCGACAGCTGTAGCACGGCCGCGTAATCTTCAA
AAGGGCTCAACCACAACACAGACTGAGTGGGCATGGTCAGACGTAAGCAG
CATATTGTACACGAGCACAGAGTATGCTCAGAATTTTGTACTGTTCAAAG
CGTGGAAGAGTGGGAGCCAAACTCCTATTGCTTGTTTGCCCAGGAAGCGG
CTTCTTCGTGACGTCATTCATTCCTGCTGAAGCCTGATCATCCGACACGC
ACGTCTCACGCTAATGATGTCTGTTGGGCATTTTGGTCACATGCTGACAA
ACAGGTGGCATGATTCGCCTTCTCGCGGCGGTTTCGAGCTTCCGGCCCCT
CTCGCAGAGATGCATAGGTCGTCTTTTTTCCTCCACAGCGCCTCACGGCA
CCTCGACCGATTCATGGGATTATGATGTCATCATTTTAGGTGGCGGTATC
GTGGGAGCCTCCTTGGCATGTAGTTTGGCAGAGAACGTCGGCCAGCGTCA
TGGTATGAAGATCGCGCTGCTTGAAATTCGCCCTCCTCCTCCCCTTGCAG
CCTGCTTAGCCCCTGACCGTCTTCCTGACCCTCGAGTTTATGCGTTGGCA
CCTGCCAGCGTGGCCTTTTTGGAGTCCTTGGGAGCGTGGCAGTTGATAAA
AGATAGAAAGAGAGATTATCAATACATGCAGGTCTGGGAGGGCGGGGGAA
GTGGGTCGATTCGATTCGATGCCGCCAAAGCCAAAGTGATGGGCTTAGGG
AGCACGAGGGCGGAGGGAAGCAACGGCGAAGGAAAGGAAAGGAAGAAGCT
GGGCACCATGGCAGAGAATAGCACCCTGCAAGCTGCATTATTTCAGTGCA
TGATATCCCTTCAAGCCCAGGGGCTCTTGGAGGTTCTCTGTCCTGTGCAG
GTCGAGGCCATAGCATTCGACACGTCAGGGACAGACCCTACGGGGCCCGC
GCGGGTGACATGGGCGGGCAAAGACGGCGTGAGAAGCCAGGTGACGACCC
GCTTGTTGGTGGGCGCGGATGGGGCGGCGTCCAGGGTGAAAAAAGCGCGG
GGCCTCCCGTCGTGGGGGTGGGACTACGCGCAACGAGCCGTCGTCGCAAC
GGTCTCACTAGACGAGCAGGCCGACGCCGCAGACGCGCCGTCACCGAGAC
CTTCAACCACACTAAGTGCCAACAAATTAAGCCACAGTAGCAGCTCCCCG
GCAACAGCCTGGCAGACCTTTCTTCCGCAGGGCCCTCTGGCCTTCCTCCC
CCTGTGGGGTCCTTACCACTCCATCGTCTGGTCGACGACGCCCGCCGAGG
CCGATCGCCTGAAAGCGCTCCCTCGGGAAGCCTTCCTGGCCGAGCTCAAC
GCGAAGCTCCAGTGTCCGATTGGCCTGCTCGACCCTCCCTCGTTCCCTTC
TTACGTCCCTCAGCCCCTGGTCAAGGCGCTCGTAGGGGCCCACCACCTGG
TGGAGAGTGTCGTGGTCAGCGCGGCGCTCAGCCAAGGTTTCCACGTCGCC
CCCATCGTTCGCGACGTATGCGGCCCCCGGCTTTCATTCGACCTGCGCGC
TGAGCACGCCAGCGCCTATGTGGGCGCACGAGCTGCATTGGTGGGCGACG
CGGCGCACACCATCCACCCGATGGCCGGTCAAGGCCTGAACCTGGGGCTC
GCGGACGCCATGGCCCTCTCCACCCTGATCGAAGCCGGTGTGGTGGAGGG
GCAAGATGTGGGGAGTCCACTCTTCCTCCGCCGCTACCAAAATGCACGGC
AGGCGGCGAATCTAGGTATGCTGGGCGGGCTGACGGCCCTGCACGGCCTC
TTCGGGCGGAAGGAAGGGTCGTGGCGCTGGCTACGCAACGTGGGCCTCGG
GACTTTGAACGCCCTGGACCCGGTTAAGGCCAAGATGGCGGAGGTGGCCA
TGGGTGTGAACAGCGGGGGGGGCAGACAAGGCATGTGACTGACAGGCAAG
GGCGGCGGGGCGAGTGTACAGTAGAAAGGAGAAGCACGGGGTCGGACACC
TCAGATTGCCCAAGCGAGAAAAACAGATTACAAGCAAGTCAGACGGTATG
GTCACATGATGATTTT

Coding sequence (CDS) from alignment at CM002456.1:1168404..1170619-

>rna1094 ID=rna1094|Name=rna1094|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at CM002456.1:1168404..1170619- (Nannochloropsis gaditana)
ATGATTCGCCTTCTCGCGGCGGTTTCGAGCTTCCGGCCCCTCTCGCAGAG
ATGCATAGGTCGTCTTTTTTCCTCCACAGCGCCTCACGGCACCTCGACCG
ATTCATGGGATTATGATGTCATCATTTTAGGTGGCGGTATCGTGGGAGCC
TCCTTGGCATGTAGTTTGGCAGAGAACGTCGGCCAGCGTCATGGTATGAA
GATCGCGCTGCTTGAAATTCGCCCTCCTCCTCCCCTTGCAGCCTGCTTAG
CCCCTGACCGTCTTCCTGACCCTCGAGTTTATGCGTTGGCACCTGCCAGC
GTGGCCTTTTTGGAGTCCTTGGGAGCGTGGCAGTTGATAAAAGATAGAAA
GAGAGATTATCAATACATGCAGGTCTGGGAGGGCGGGGGAAGTGGGTCGA
TTCGATTCGATGCCGCCAAAGCCAAAGTGATGGGCTTAGGGAGCACGAGG
GCGGAGGGAAGCAACGGCGAAGGAAAGGAAAGGAAGAAGCTGGGCACCAT
GGCAGAGAATAGCACCCTGCAAGCTGCATTATTTCAGTGCATGATATCCC
TTCAAGCCCAGGGGCTCTTGGAGGTTCTCTGTCCTGTGCAGGTCGAGGCC
ATAGCATTCGACACGTCAGGGACAGACCCTACGGGGCCCGCGCGGGTGAC
ATGGGCGGGCAAAGACGGCGTGAGAAGCCAGGTGACGACCCGCTTGTTGG
TGGGCGCGGATGGGGCGGCGTCCAGGGTGAAAAAAGCGCGGGGCCTCCCG
TCGTGGGGGTGGGACTACGCGCAACGAGCCGTCGTCGCAACGGTCTCACT
AGACGAGCAGGCCGACGCCGCAGACGCGCCGTCACCGAGACCTTCAACCA
CACTAAGTGCCAACAAATTAAGCCACAGTAGCAGCTCCCCGGCAACAGCC
TGGCAGACCTTTCTTCCGCAGGGCCCTCTGGCCTTCCTCCCCCTGTGGGG
TCCTTACCACTCCATCGTCTGGTCGACGACGCCCGCCGAGGCCGATCGCC
TGAAAGCGCTCCCTCGGGAAGCCTTCCTGGCCGAGCTCAACGCGAAGCTC
CAGTGTCCGATTGGCCTGCTCGACCCTCCCTCGTTCCCTTCTTACGTCCC
TCAGCCCCTGGTCAAGGCGCTCGTAGGGGCCCACCACCTGGTGGAGAGTG
TCGTGGTCAGCGCGGCGCTCAGCCAAGGTTTCCACGTCGCCCCCATCGTT
CGCGACGTATGCGGCCCCCGGCTTTCATTCGACCTGCGCGCTGAGCACGC
CAGCGCCTATGTGGGCGCACGAGCTGCATTGGTGGGCGACGCGGCGCACA
CCATCCACCCGATGGCCGGTCAAGGCCTGAACCTGGGGCTCGCGGACGCC
ATGGCCCTCTCCACCCTGATCGAAGCCGGTGTGGTGGAGGGGCAAGATGT
GGGGAGTCCACTCTTCCTCCGCCGCTACCAAAATGCACGGCAGGCGGCGA
ATCTAGGTATGCTGGGCGGGCTGACGGCCCTGCACGGCCTCTTCGGGCGG
AAGGAAGGGTCGTGGCGCTGGCTACGCAACGTGGGCCTCGGGACTTTGAA
CGCCCTGGACCCGGTTAAGGCCAAGATGGCGGAGGTGGCCATGGGTGTGA
ACAGCGGGGGGGGCAGACAAGGCATGTGA

Synonyms

Publications