rna1093, rna1093 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1093
Unique Name	rna1093
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1880
Alignment location	CM002456.1:1167121..1168242 +

Link to JBrowse

Properties


Property Name	Value
Product	3-methyl-2-oxobutanoate hydroxymethyltransferase
Orig transcript id	gnl\|cribi\|Naga_100006g74.8649.mrna
Orig protein id	gnl\|cribi\|Naga_100006g74.8649
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1167121..1168242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g74	gene1053	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1093	rna1093-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29560.1	cds1092	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1167121..1168242+
coding sequence from alignment at CM002456.1:1167121..1168242+

mRNA sequence

>rna1093 ID=rna1093|Name=rna1093|organism=Nannochloropsis gaditana|type=mRNA|length=1880bp
AACACATCAACGCTCTGGCACATTTTATTTATTTTTATGGCAGGTTCTCT
AGCCTATTTTAGGCGTGTTCTCTTCGACAGCTCTTCGAGGATCGCCTGTC
TCAGTTGGCCTTTGTTTTTCGCTCTGCCCCGTCCTTGCAGCCGCGTGCTG
TCCACCTGGACAATGCCCACCAAGTACATAATAGCCGAAATACTGAGGCT
CATGCCAGATCTTGAGAGTTTTTCGCGCCCATCTTCGGCTGAAGCGCCCG
AAATTAGCATCGATAGAGATTTAGCCACCAAGGTGCTTTTTGCACTCATC
GCCATGGTTGCGACCTGGAAAATTTGTCTGTATGTGGATCGAGCACGCAA
AATCGGGAGAATGAACATGCCCGTCGTCCCCGGTGGTCTGCCTTTCTTTG
GCCAAGTATTGGAATTAATCCGCTTGCCTCCTTGGGATCTTATGGTGCAA
TGGATGGAACGCTTAGGGCCCATCTATCGTTTCACCCTCTTTGGAGAGAG
CTGCGTAGTGGTGGCGGATCCCGGATTGCTCCGAGAGGTGCTGCAGACAA
GCATGAAAGCTTTTCAGAAGGACCTGGGCTTCACGTACAAGCCCTTCATG
CCCCTTTTAGGAACGGGACTGGTCACATCCGAGGGCCAGCTGTGGTACAC
ACAACGTGCGATGGTCTCTTCTGTCTTCCGGATCGAGATCCTCGAGATTA
TTCCCGACATTGCCAAACGGGCAGTGGAGCGCTTGTGCACCAAGCTAGAG
TCTGTCCGTAACACGGACCAGGCAGTGGAGATCGGGGAGATGTTCCGTCA
CTTGACCCTCCAGGTCATTGCCGAAGCAGTGCTGAGTCTCTCGCCCGAGG
AGTCTGACCAGACCTTCGCACGCATGTATCTACCCATTGTCACCGAGGGG
AACCGCCGGACCTGGTACCCCCATCGCGCCTACCTCCCCACCCCCGCCTT
CTGGGCCTTCCGCAAAGATGTCAAAGTGCTCAACGACTACATCACCAGCG
TCATAGAAAAACGATGGCAACTTCGCCAGTGCGAAGCGAAAGAGCCTTCC
CACCTCCCTCCCCCGGCGTCCGCTGCCTCTCCCCCCCACCGGCAGCACGA
CATCTTGGACCGCATTCTGGACGGCGTGCACCCCAAGACATGGGGTTCGG
CGACTGTCCGACAGATCCGAGACGAGATCAAGACCTTCATCCTGGCCGGG
CACGAGACGTCGGCCTCCATGCTGACATGGGCCCTGTATGAGGCCACGCA
GAGCCAAGGCGTCGCGGACAGGGTCGCTGCGGAGGCCGCCGTCGTCTTCG
GCCCGGATGCCAGCGCCACGACCCCGCTCCCTGCGGCCGATAAATTGGGA
AGCTTGATCTACACGCAATGCTGCCTGAAAGAGGCCTTGCGGAAATACAG
CGTGGTTCCGATCGTGACGCGCGAGACAGTACGGGAGGTTTCCCTGGGGT
CTGGGAGATATTTGATACCCAAGGGAACGAGGATGATGATCTTGATCCAG
GGCGTGCACCACCGGAAAGATTTGTGGCCTTCGCCGCTCACCTACCGCCC
GGAGCGCTTCCTGAAAAAAGGACCCGAGCCTTTCACCTTCTTGCCCTTCA
TCGACGGCCCTCGAAACTGCTTGGGACAGCACTTGGCGTTGCTGGAGACC
AAGATCGTCCTGGCGACCCTCTTGCAGCGGTTTCGCTTCGAGGCAATCGG
GGGGGAGAGGGCCGGGAGGAAACACCCGTCCATGGTTCCCGTGATCCCTG
ACGACCCCGGGTTGATGGTTGTGGTGAGATAGGGGGAGGGAGGGAAAGCT
CGCAGGGGGCATCTTAGGTCTCAAAGTACAAATAATGGGGGTAGCAGCAC
CTCTTATTGCTAAAACAAAAGAAAAAGTCA

protein sequence of rna1093

>rna1093-protein ID=rna1093-protein|Name=rna1093|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MNTWLSTRHNFWRLSRPKNRLHSYQCSRSFAASPPAESLAPAGGPRASAR
PPLGGNASSKKMSVLDLLHKKRKNQRISMVTAYDYPSALHVDLAGIDIVL
CGDSVAMVELGYDTTQPVDMEQMLHHCKAVARGTKRSLIVGDMPFGSYEV
SEELAMTNAFRFIKEGFTDAVKIEGGRDRAHIVEKIVKNGIAVMGHVGLT
PQAISVLGGFRAQGRTAVKARGLVDDALALQEAGAFAVVVECVPAPVAQA
ITEALEIPTIGIGAGPHTCGQVLVFHDMLGMTTHPHHEAFVPRFCKRYAQ
LGNVIREGLESFKQDVEAGTFPSEAYSPYKMPAAELRAFQALMAQDATSR
QTQAHRAAERLKQSDEYEQIKLY

mRNA from alignment at CM002456.1:1167121..1168242+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1093 ID=rna1093|Name=rna1093|organism=Nannochloropsis gaditana|type=mRNA|length=1122bp|location=Sequence derived from alignment at CM002456.1:1167121..1168242+ (Nannochloropsis gaditana)
ATGAATACTTGGCTTTCAACAAGGCACAACTTCTGGAGACTTTCACGTCC
CAAGAATAGGTTACATAGTTATCAGTGTTCTCGCTCCTTTGCGGCCTCTC
CGCCTGCCGAAAGCTTGGCACCCGCCGGGGGCCCGAGGGCAtcagcccgc
cctcccctgggAGGGAATGCGTCCTCCAAAAAAATGTCGGTGTTGGATTT
GTTGCACAAAAAACGAAAAAATCAACGCATCTCTATGGTGACTGCGTACG
ACTACCCGTCGGCGTTGCACGTGGACCTGGCAGGCATCGACATTGTCTTG
TGCGGGGACTCGGTGGCCATGGTTGAGTTGGGTTACGACACTACCCAACC
GGTGGACATGGAGCAGATGCTGCACCATTGCAAAGCGGTGGCACGGGGTA
CAAAGCGGTCGTTGATCGTCGGCGATATGCCCTTTGGCTCCTACGAGGTG
TCCGAGGAGCTGGCAATGACCAACGCATTCCGTTTTATCAAGGAAGGGTT
CACAGACGCGGTCAAgattgaaggagggcgggacagGGCCCACATTGTTG
AGAAAATCGTCAAAAATGGAATTGCGGTCATGGGGCACGTAGGTCTAACC
CCTCAAGCCATCTCTGTACTGGGAGGCTTTCGCGCCCAGGGGCGTACGGC
TGTGAAAGCCCGAGGCCTGGTAGATGACGCGTTGGCCCTCCAAGAGGCCG
GCGCCTTCgcagtggtggtggaatgcgtccccgcccccgtcgcgcAAGCC
ATCACCGAGGCGCTGGAGATACCGACCATCGGGATCGGCGCCGGACCCCA
CACCTGCGGCCAGGTGCTCGTCTTCCACGACATGCTGGGCATGACTACCC
ACCCTCATCACGAGGCCTTCGTCCCTCGTTTCTGCAAACGTTACGCACAG
CTGGGGAACGTGATTCGGGAAGGGCTAGAATCCTTCAAacaggacgtgga
ggccgggACATTCCCCTCGGAAGCGTACTCCCCTTACAAAATGCCGGCCG
CAGAGCTCCGTGCCTTCCAAGCCCTGATGGCCCAGGACGCCACCAGCCGG
CAGACGCAGGCGCACAGGGCGGCAGAACGCTTGAAACAGAGCGATGAATA
CGAACAAATCAAGCTTTACTGA

Coding sequence (CDS) from alignment at CM002456.1:1167121..1168242+

>rna1093 ID=rna1093|Name=rna1093|organism=Nannochloropsis gaditana|type=CDS|length=1122bp|location=Sequence derived from alignment at CM002456.1:1167121..1168242+ (Nannochloropsis gaditana)
ATGAATACTTGGCTTTCAACAAGGCACAACTTCTGGAGACTTTCACGTCC
CAAGAATAGGTTACATAGTTATCAGTGTTCTCGCTCCTTTGCGGCCTCTC
CGCCTGCCGAAAGCTTGGCACCCGCCGGGGGCCCGAGGGCAtcagcccgc
cctcccctgggAGGGAATGCGTCCTCCAAAAAAATGTCGGTGTTGGATTT
GTTGCACAAAAAACGAAAAAATCAACGCATCTCTATGGTGACTGCGTACG
ACTACCCGTCGGCGTTGCACGTGGACCTGGCAGGCATCGACATTGTCTTG
TGCGGGGACTCGGTGGCCATGGTTGAGTTGGGTTACGACACTACCCAACC
GGTGGACATGGAGCAGATGCTGCACCATTGCAAAGCGGTGGCACGGGGTA
CAAAGCGGTCGTTGATCGTCGGCGATATGCCCTTTGGCTCCTACGAGGTG
TCCGAGGAGCTGGCAATGACCAACGCATTCCGTTTTATCAAGGAAGGGTT
CACAGACGCGGTCAAgattgaaggagggcgggacagGGCCCACATTGTTG
AGAAAATCGTCAAAAATGGAATTGCGGTCATGGGGCACGTAGGTCTAACC
CCTCAAGCCATCTCTGTACTGGGAGGCTTTCGCGCCCAGGGGCGTACGGC
TGTGAAAGCCCGAGGCCTGGTAGATGACGCGTTGGCCCTCCAAGAGGCCG
GCGCCTTCgcagtggtggtggaatgcgtccccgcccccgtcgcgcAAGCC
ATCACCGAGGCGCTGGAGATACCGACCATCGGGATCGGCGCCGGACCCCA
CACCTGCGGCCAGGTGCTCGTCTTCCACGACATGCTGGGCATGACTACCC
ACCCTCATCACGAGGCCTTCGTCCCTCGTTTCTGCAAACGTTACGCACAG
CTGGGGAACGTGATTCGGGAAGGGCTAGAATCCTTCAAacaggacgtgga
ggccgggACATTCCCCTCGGAAGCGTACTCCCCTTACAAAATGCCGGCCG
CAGAGCTCCGTGCCTTCCAAGCCCTGATGGCCCAGGACGCCACCAGCCGG
CAGACGCAGGCGCACAGGGCGGCAGAACGCTTGAAACAGAGCGATGAATA
CGAACAAATCAAGCTTTACTGA

Synonyms

Publications