rna1091, rna1091 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1091
Unique Name	rna1091
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1019
Alignment location	CM002456.1:1162965..1164924 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial chloroplast ribosome small subunit component
Orig transcript id	gnl\|cribi\|Naga_100006g76.8680.mrna
Orig protein id	gnl\|cribi\|Naga_100006g76.8680
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1162965..1164924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g76	gene1051	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1091	rna1091-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29591.1	cds1090	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1162965..1164924+
coding sequence from alignment at CM002456.1:1162965..1164924+

mRNA sequence

>rna1091 ID=rna1091|Name=rna1091|organism=Nannochloropsis gaditana|type=mRNA|length=1019bp
CCACTGCCTCCTTCCATCTGATCCATTGCCATCGAGACGTGCAAAGACAA
CTGCGAAAATCACGCCCGCCGCACGAGCAAAGTTGAACAACGAGTCGATC
GTGCCGGAGGCAAATCAGAGCTGCCGCTGATTTTGTGAGGTTTAGGCGAG
GTCTTTGGCGGTGTCGAACGTGCAAAGTCCCCGCTCCTTTTTTGGGTCTC
TGTAGACCTACATTGATAATGAGCTTTGTCAAAGAGCCACAGCTGCCTTT
TGAGGTCCCAAACGTCTTGCCTACATGTCAAGCATGATTGGGGTATAGAG
GGATATATCGCAGAGATTTCTCCTTATGCTCCAACTCGTTGCCAATATAT
CGTCAACAGGGATGCTCCAGTCTGCTGTCAGACACGTGACTGTAGCCAGA
AATTCAATTGGATTTAGGAAGACTTGCTCGCTCCCTGCTTTGATACAGAT
ACCACGTATCCTTTTTCATGCGACTGCGCGCGTCGCACACGGCAGTGGCA
AAGATCTGAAAAATGCCCCGCGCATCAACTTGCACTGGATTGGAAAGAAA
GGAGAGGAATTCACCACGGACGGCATTGTCGGAGAAAGTATCCTGGAGGC
CGCACATCGGCATGAAGTGGAACTTGAAGGCGCGTGTGAAGGCGTGTGCG
CCTGCTCTACCTGCCACGTGATATTGGAAGAACCCGTGTTTGAGTCGTTG
GAGGACCCATCGGAGGAGGAGGAGGATATGCTCGACCAAGCTTTTGGCCT
GACGCCCACGTCTCGCCTGGGATGTCAAGTAGAACTGAGCCAGGACATGG
ATGGGTTAAAAATCAAACTTCCATCAGCGACGCGGAACTTCTACATAGAC
GGCCATGTGCCCAAACCCCATTAGAAGGGGTCAACTTCTCTCAGAGCTCG
AGGGAAATTTTGGTACGAACAAGGCGGGGAGCAAGTGTCAATATTGAATG
TTTCTTGTTGTACGAGGCTCAAATGTGCTTAATCACTAAAGACAATTGTG
CGTGGAAGCAGTACAATCG

protein sequence of rna1091

>rna1091-protein ID=rna1091-protein|Name=rna1091|organism=Nannochloropsis gaditana|type=polypeptide|length=586bp
MLGRLLIRKRPSPNFVIRPPLVQPPGCLVLPSTKQHSSSTSPTPALKHVS
LVPADNDNEEREADLREERTALGKALLDPAWMHGRRALAAPPVEGLDRIN
DVSRLLSGRQIRLHASRLNRSKRESGLATERSRRPLKLKDGGLQEEEDAG
GESGESIDKGTKNKSHGPKYVKEEKTTIEGHDAEEERQMIEGESEKPGYT
IRKPAWTGRVASPPEALAYLSTRSLLNFSINLRVLRDVAVAARSPLFASS
EARPRSFLDVGCGPGSALLAAHTLWPDIPRLDGVDHSQAMQDLTKHVVET
GGKDQAGRGDRLVLHRHLPPLLAQSGRSQLRFDVVFASWTLSELPSDASR
ALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVLEGGDPGTQAG
TTGPQARARTVGPCQHDRPCPLPREEWCRFSQRIPIGRLHRRIGKPGSGY
KDVAFSYTILKKLPGTGEDGEGDKEGRKWGDARLEALHRLRYGDSGKGEE
DGAAYPYRPKDRDWEVALQADPGREGWGRLIRNPKKKKGHVHLDLCTPAG
ELERVMVAKRATRALPGKYMAARKAQWGGLWPFPDV

mRNA from alignment at CM002456.1:1162965..1164924+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1091 ID=rna1091|Name=rna1091|organism=Nannochloropsis gaditana|type=mRNA|length=1960bp|location=Sequence derived from alignment at CM002456.1:1162965..1164924+ (Nannochloropsis gaditana)
GTGGTAGTCGAATGTTGGGACGATTGCTCATTCGCAAGCGGCCGAGTCCT
AACTTTGTCATTCGTCCGCCACTCGTACAACCTCCTGGCTGCCTGGTATT
ACCCTCTACAAAGCAACACtcttccagcacctcccccacacccGCCCTCA
AGCATGTCTCTCTCGTCCCTGCTGACAATGACAATGAAGAACGTGAGGCG
GAtttgcgggaggagcggacTGCGCTTGGGAAAGCCTTGCTCGATCCAGC
TTGGATGCacgggaggcgggcgctTGCCGCTCCCCCTGTTGAAGGTCTCG
ACAGAATAAACGACGTCTCACGACTGCTGTCTGGCAGACAAATTCGTCTT
CATGCCAGCCGTCTCAATAGGAGCAAGCGTGAAAGCGGATTGGCTACGGA
AAGAAGTAGGAGGCCCTTAAAATTGAAAGACGGGGGCctacaggaagagg
aggatgcggggGGCGAGTCGGGCGAAAGCATTGACAAGGGCACCAAAAAC
AAGAGTCATGGGCCCAAGTATGttaaggaggaaaagacaacGATTGAAGG
GCAtgatgcggaggaagagaggcaaaTGATCGAGGGCGAAAGTGAAAAGC
CGGGATACACCATCCGCAAGCCCGCGTGGACGGGGCGAgtggcttccccc
cccgaggcgTTGGCTTACCTGTCCACTCGCTCCTTGCTGAACTTCTCGAT
CAATCTTCGCGTGCTCCGCGACGTGGCCGTTGCCGCTCGTTCGCCCCTTT
TCGCGTCGTCTGAGGCACGTCCCAGGTCGTTTTTGGACGTGGGGTGCGGG
CCGGGGAGTGCTCTCCTTGCTGCACACACCCTCTGGCCCGACATCCCGCG
GTTGGACGGCGTGGACCACAGCCAAGCCATGCAGGATCTCACCAAGCACG
TGGTCGAaacgggggggaaagaccaggccgggcggggcgacaggcttgtc
ctccatcggcacctcccccccctcctcgcccagtcCGGGCGTTCGCAGCT
CCGCTTCGACGTGGTGTTTGCTTCATGGACCCTGTCGGAGCTCCCGTCGG
ACGCCAGccgggccttggccacctccatcatgtgggagctggtggcggag
aacGGGGGCTTCCTGGTCGTGGTGGAAGATGGGTCACCGGAGGGATCTCG
GCTCGTGCGCTCGGTCAGGAAATTGGTCTTGGAGGGGGGCGATCCGGGCA
CTCAAGCAGGAACGACAGGGCCACAGGCGCGTGCTAGGACGGTGGGGCCT
TGCCAGCACGaccgtccctgccccttgccAAGGGAAGAATGGTGCCGTTT
TTCCCAGCGGATCCCGATCGGACGCCTGCACCGGCGGATAGGCAAGCCGG
GGTCGGGATACAAGGACGTGGCCTTCTCCTACACCATCCTCAAAAAGCTA
CCCGgcacgggggaggacggggaaggagacaaggagggacggaaatGGGG
GGACGCACGGTTGGAGGCGCTGCATCGGCTTCGCTACGGCGACAGCggga
agggcgaagaggatgggGCAGCATACCCGTATCGACCCAAAGACCGGGAC
TGGGAGGTGGCTCTCCAGGCTGATCCTggccgggaggggtgggggcggct
gATCCGAAacccgaaaaagaaaaagggccaCGTGCATCTGGACTTGTGCA
CGCCCGCAGGGGAGTTGGAGCGAGTCATGGTGGCGAAAAGGGCGACCAGG
GCCTTGCCGGGGAAGTACATGGCTGCGCGGAAGGCACAGTGGGGAGGGCT
GTGGCCTTTCCCAGATGTGTGATGTgcaggcaaggggggggggggtcgaa
GAGGTAAAGCAACCGACACGACGACATCGGCTTTGGGAGGAAAGGTTTGT
CGCAACACATTTCTTTAAGGTACCCGCCGCCGATGCTCAAAATTCTGact
ttttcttttgttttAGCAATAAGAGGTGCTGCTACCCCCATTATTTGTAC
TTTGAGACCT

Coding sequence (CDS) from alignment at CM002456.1:1162965..1164924+

>rna1091 ID=rna1091|Name=rna1091|organism=Nannochloropsis gaditana|type=CDS|length=1761bp|location=Sequence derived from alignment at CM002456.1:1162965..1164924+ (Nannochloropsis gaditana)
ATGTTGGGACGATTGCTCATTCGCAAGCGGCCGAGTCCTAACTTTGTCAT
TCGTCCGCCACTCGTACAACCTCCTGGCTGCCTGGTATTACCCTCTACAA
AGCAACACtcttccagcacctcccccacacccGCCCTCAAGCATGTCTCT
CTCGTCCCTGCTGACAATGACAATGAAGAACGTGAGGCGGAtttgcggga
ggagcggacTGCGCTTGGGAAAGCCTTGCTCGATCCAGCTTGGATGCacg
ggaggcgggcgctTGCCGCTCCCCCTGTTGAAGGTCTCGACAGAATAAAC
GACGTCTCACGACTGCTGTCTGGCAGACAAATTCGTCTTCATGCCAGCCG
TCTCAATAGGAGCAAGCGTGAAAGCGGATTGGCTACGGAAAGAAGTAGGA
GGCCCTTAAAATTGAAAGACGGGGGCctacaggaagaggaggatgcgggg
GGCGAGTCGGGCGAAAGCATTGACAAGGGCACCAAAAACAAGAGTCATGG
GCCCAAGTATGttaaggaggaaaagacaacGATTGAAGGGCAtgatgcgg
aggaagagaggcaaaTGATCGAGGGCGAAAGTGAAAAGCCGGGATACACC
ATCCGCAAGCCCGCGTGGACGGGGCGAgtggcttccccccccgaggcgTT
GGCTTACCTGTCCACTCGCTCCTTGCTGAACTTCTCGATCAATCTTCGCG
TGCTCCGCGACGTGGCCGTTGCCGCTCGTTCGCCCCTTTTCGCGTCGTCT
GAGGCACGTCCCAGGTCGTTTTTGGACGTGGGGTGCGGGCCGGGGAGTGC
TCTCCTTGCTGCACACACCCTCTGGCCCGACATCCCGCGGTTGGACGGCG
TGGACCACAGCCAAGCCATGCAGGATCTCACCAAGCACGTGGTCGAaacg
ggggggaaagaccaggccgggcggggcgacaggcttgtcctccatcggca
cctcccccccctcctcgcccagtcCGGGCGTTCGCAGCTCCGCTTCGACG
TGGTGTTTGCTTCATGGACCCTGTCGGAGCTCCCGTCGGACGCCAGccgg
gccttggccacctccatcatgtgggagctggtggcggagaacGGGGGCTT
CCTGGTCGTGGTGGAAGATGGGTCACCGGAGGGATCTCGGCTCGTGCGCT
CGGTCAGGAAATTGGTCTTGGAGGGGGGCGATCCGGGCACTCAAGCAGGA
ACGACAGGGCCACAGGCGCGTGCTAGGACGGTGGGGCCTTGCCAGCACGa
ccgtccctgccccttgccAAGGGAAGAATGGTGCCGTTTTTCCCAGCGGA
TCCCGATCGGACGCCTGCACCGGCGGATAGGCAAGCCGGGGTCGGGATAC
AAGGACGTGGCCTTCTCCTACACCATCCTCAAAAAGCTACCCGgcacggg
ggaggacggggaaggagacaaggagggacggaaatGGGGGGACGCACGGT
TGGAGGCGCTGCATCGGCTTCGCTACGGCGACAGCgggaagggcgaagag
gatgggGCAGCATACCCGTATCGACCCAAAGACCGGGACTGGGAGGTGGC
TCTCCAGGCTGATCCTggccgggaggggtgggggcggctgATCCGAAacc
cgaaaaagaaaaagggccaCGTGCATCTGGACTTGTGCACGCCCGCAGGG
GAGTTGGAGCGAGTCATGGTGGCGAAAAGGGCGACCAGGGCCTTGCCGGG
GAAGTACATGGCTGCGCGGAAGGCACAGTGGGGAGGGCTGTGGCCTTTCC
CAGATGTGTGA

Synonyms

Publications