rna1088, rna1088 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1088
Unique Name	rna1088
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1425
Alignment location	CM002456.1:1155512..1157188 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g79.8677.mrna
Orig protein id	gnl\|cribi\|Naga_100006g79.8677
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1155512..1157188 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g79	gene1048	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1088	rna1088-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29588.1	cds1087	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1155512..1157188+
coding sequence from alignment at CM002456.1:1155512..1157188+

mRNA sequence

>rna1088 ID=rna1088|Name=rna1088|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp
ACAGAACCGCGACGCGTCGTCACTGTTGTGCTTCTTGTCAACGTGGAAGA
ACTCAAGAAGAACTGAAGCTAGCGATGATTCGATGTCGCAAGTATCTTTC
CATTCCGTCACCCTCTGCGCCCTCCTTACGCCATATTTCTCAGCGGTCGA
TGACCACAAGAACGCGAGCTAAAGCCAATGTTGGCAATGATGTTACGCCT
GCCAAGGAGGGCGTAGCAACGAGGCAGCGGAGACAAGCATCCGACTCCTC
CGGCCCTCCCTCCCAAACGTCCCTCCCACCCATTAAGAAAGCAGTGAAAA
GGACTTCTAACGTGGACCAATCAGACGACGACGACGACAAACCCGTAGAA
ATTCAGTCTCGTGCGATACGAGATGGTGAGCGTGGCAATCACTCAAGGCC
AAGCGGCTTGAATACACGGGTTAAAAAGCGACCACGGAAAGTTAAGGAGC
GCGAAAACAAATATTGGGCGGAGAAGGGGGGCCATGAGGGTGCAGGGCAA
GGAAGACCGGTGCATGAGGATGAAGGGGATGTACAGGGCCTCTCCGCCCC
TAACCATGCCGCTACAGAAGCAAACGAGGATGGGCAGAAAAATGTGGAAG
AGGCAAACAGACTTGTGGACCCTTCCTCGGGAGATGAACCCTTGCCGGCG
ACTTTCTGGGAAGCAGTGCAACGGGCCAAAGAAGCCGAGCAACAGCAACG
CATCAATGAGGCTCTGCGGCGCGTGGAGACCAAGAGGTGCGTGTAGGGGG
GGAGACAGGCGTAATAATGTGCTATGGGGTAAAAGAGGCGGAGAGAGGTG
TGATGGAGGAGTTTTAGCGTTCTACATGGATGTGGAAGGTGGCTGTAACC
GGAGGTACGACGCCCACTGCGATAGCTTATAGCCGGATCCAAGACGGAGA
TGGTCTCTTCATGCCTCATTCAAATACACGATGGTATGACAGGGGAAAAA
CGAGTGAAGGAGAGCAAACGAGGTTCAAGAAAATCGTGAAGATTCCTCGA
GTGAGTGGAAACATTCAGGTGGTTCCGCTTAATGAGCTAACGGAGGAGGT
AGATGGGAGGACCGACGTCCCGTCCGAGGTTCTGGCGTTCGCGCAATCAT
TGGGAGCAAGCACCGGCCTTGCAACTTCACGGAAAAGGGTGCCATTCGTG
GCATTTGCTAGAGCAAAACCCAGCACCGTAAGGTCGAAAAGCACTCACAA
GGCCGCTCCGAGGGCAAGGGCAGGTGAAAATCCCATATGAAAAAGAAAAT
AGGGTATGGCAGACAAGAGATTTAAGAAAAATACTCGAAAATATTTTGAT
TGTTTAAGCGCGTTCCTGGCGCGCACGAGCGTGGGAATTTCTTTTTCGCC
TCTTCAGACCATCTCGATTTTCTTTTTTTGGGGTTGTCATCCTATACTTG
TACATCCAAGGCTTACTTAAAATCG

protein sequence of rna1088

>rna1088-protein ID=rna1088-protein|Name=rna1088|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MTTRTRAKANVGNDVTPAKEGVATRQRRQASDSSGPPSQTSLPPIKKAVK
RTSNVDQSDDDDDKPVEIQSRAIRDGERGNHSRPSGLNTRVKKRPRKVKE
RENKYWAEKGGHEGAGQGRPVHEDEGDVQGLSAPNHAATEANEDGQKNVE
EANRLVDPSSGDEPLPATFWEAVQRAKEAEQQQRINEALRRVETKRGKTS
EGEQTRFKKIVKIPRVSGNIQVVPLNELTEEVDGRTDVPSEVLAFAQSLG
ASTGLATSRKRVPFVAFARAKPSTVRSKSTHKAAPRARAGENPI

mRNA from alignment at CM002456.1:1155512..1157188+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1088 ID=rna1088|Name=rna1088|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp|location=Sequence derived from alignment at CM002456.1:1155512..1157188+ (Nannochloropsis gaditana)
AGTATCTTTCCATTCCGTCACCCTCTGCGCCCTCCTTACGCCATATTTCT
CAGCGGTCGATGACCACAAGAACGCGAGCTAAAGCCAATGTTGGCAATGA
TGTTACGCctgccaaggagggcgtAGCAACGAGGCAGCGGAGACAAGCAT
CCGactcctccggccctccctcccaaacgtccctcccacccattAAGAAA
GCAGTGAAAAGGACTTCTAACGTGGACCAATcagacgacgacgacgacaa
aCCCGTAGAAATTCAGGTATATGATGTCAATCATGGTATATTTGTGCTTT
GTAAAAAATTCCTTTTCCAACTGCTACGCTTACTTGATTCACCTattgtc
tccttcctgcgtTGTAGTCTCGTGCGATACGAGATGGTGAGCGTGGCAAT
CACTCAAGGCCAAGCGGCTTGAATACACGGGTTAAAAAGCGACCACGGAA
AGTTAAGGAGCGCGAAAACAAATAttgggcggagaaggggggccATGAGG
GTgcagggcaaggaagacCGGTGCATGAGGATGAAGGGGATGTACAgggc
ctctccgcccctAACCATGCCGCTACAGAAGCAAACGAGGATGGGCAGAA
AAATGTGGAAGAGGCAAACAGACTTGTGGACCCTTCCTCGGGAGATGAAC
CCTTGCCGGCGACTTTCTGGGAAGCAGTGCAACGGGCCAAAGAAGCCGAG
CAACAGCAACGCATCAATGAGGCTCTGCGGCGCGTGGAGACCAAGAGGTG
CGTGTAGGGGGGGAGACAGGCGTAATAATGTGCTATGGGGTAaaagaggc
ggagagaggTGTGATGGAGGAGTTTTAGCGTTCTACATGGATGTGGAAGG
TGGCTGTAACCGGAGGTACGACGCCCACTGCGATAGCTTATAGCCGGATC
CAAGACGGAGATGGTCTCTTCATGCCTCATTCAAATACACGATGGTATGA
CAGGGGAAAAACGAGTGAAGGAGAGCAAACGAGGTTCAAGAAAATCGTGA
AGATTCCTCGAGTGAGGTAGGTGCAGATGATATCAGAATGAGAGGAAGAT
CGCGTGAACGTCGACGAAAAGATGGGCCGCATGGACTCGAACGAGTCTAA
TCCAAGTGCCTCTACATTCAGTGGAAACATTCAGGTGGTTCCGCTTAATG
AGCTAACGGAGGAGGTAGATGGGAGGACCGACGTCCCGTCCGAGGTAAGC
TTCGTTTATTCGTTTAAATCGCGATGACGATAcaaggatgaagaagaagg
gctgGTGCCTATCGTGTACCTAGAGCGTGCCATGAAAAAATGTCACGGCC
TCCATGCCTTTTCTGCCCTTCTCTCTGTAGGTTCTGGCGTTCGCGCAATC
ATTGGGAGCAAGCACCGGCCTTGCAACTTCACGGAAAAGGGTGCCATTCG
TGGCATTTGCTAGAGCAAAACCCAGCACCGTAAGGTCGAAAAGCACTCAC
AAGGCCGCTCCGAGGGCAAGGGCAGGTGAAAATCCCAtatgaaaaagaaa
atagGGTATGGCAGACAAGAGATTTAAGAAAAATACTCGAAAATATTTTG
ATTGTTTAAGCGCGTTCCTGGCGCGCACGAGCGTGGGAATTTCTTTTTCG
CCTCTTCAGACCATCTcgattttctttttttggggtTGTCATCCTATACT
TGTACATCCAAGGCTTACTTAAAATCG

Coding sequence (CDS) from alignment at CM002456.1:1155512..1157188+

>rna1088 ID=rna1088|Name=rna1088|organism=Nannochloropsis gaditana|type=CDS|length=4425bp|location=Sequence derived from alignment at CM002456.1:1155512..1157188+ (Nannochloropsis gaditana)
ATGACCACAAGAACGCGAGCTAAAGCCAATGTTGGCAATGATGTTACGCc
tgccaaggagggcgtAGCAACGAGGCAGCGGAGACAAGCATCCGactcct
ccggccctccctcccaaacgtccctcccacccattAAGAAAGCAGTGAAA
AGGACTTCTAACGTGGACCAATcagacgacgacgacgacaaaCCCGTAGA
AATTCAGTCTCGTGCGATACGAGATGGTGAGCGTGGCAATCACTCAAGGC
CAAGCGGCTTGAATACACGGGTTAAAAAGCGACCACGGAAAGTTAAGGAG
CGCGAAAACAAATAttgggcggagaaggggggccATGAGGGTgcagggca
aggaagacCGGTGCATGAGGATGAAGGGGATGTACAgggcctctccgccc
ctAACCATGCCGCTACAGAAGCAAACGAGGATGGGCAGAAAAATGTGGAA
GAGGCAAACAGACTTGTGGACCCTTCCTCGGGAGATGAACCCTTGCCGGC
GACTTTCTGGGAAGCAGTGCAACGGGCCAAAGAAGCCGAGCAACAGCAAC
GCATCAATGAGGCTCTGCGGCGCGTGGAGACCAAGAGGGGAAAAACGAGT
GAAGGAGAGCAAACGAGGTTCAAGAAAATCGTGAAGATTCCTCGAGTGAG
TGGAAACATTCAGGTGGTTCCGCTTAATGAGCTAACGGAGGAGGTAGATG
GGAGGACCGACGTCCCGTCCGAGGTTCTGGCGTTCGCGCAATCATTGGGA
GCAAGCACCGGCCTTGCAACTTCACGGAAAAGGGTGCCATTCGTGGCATT
TGCTAGAGCAAAACCCAGCACCGTAAGGTCGAAAAGCACTCACAAGGCCG
CTCCGAGGGCAAGGGCAGGTGAAAATCCCAtatgaATGACCACAAGAACG
CGAGCTAAAGCCAATGTTGGCAATGATGTTACGCctgccaaggagggcgt
AGCAACGAGGCAGCGGAGACAAGCATCCGactcctccggccctccctccc
aaacgtccctcccacccattAAGAAAGCAGTGAAAAGGACTTCTAACGTG
GACCAATcagacgacgacgacgacaaaCCCGTAGAAATTCAGTCTCGTGC
GATACGAGATGGTGAGCGTGGCAATCACTCAAGGCCAAGCGGCTTGAATA
CACGGGTTAAAAAGCGACCACGGAAAGTTAAGGAGCGCGAAAACAAATAt
tgggcggagaaggggggccATGAGGGTgcagggcaaggaagacCGGTGCA
TGAGGATGAAGGGGATGTACAgggcctctccgcccctAACCATGCCGCTA
CAGAAGCAAACGAGGATGGGCAGAAAAATGTGGAAGAGGCAAACAGACTT
GTGGACCCTTCCTCGGGAGATGAACCCTTGCCGGCGACTTTCTGGGAAGC
AGTGCAACGGGCCAAAGAAGCCGAGCAACAGCAACGCATCAATGAGGCTC
TGCGGCGCGTGGAGACCAAGAGGGGAAAAACGAGTGAAGGAGAGCAAACG
AGGTTCAAGAAAATCGTGAAGATTCCTCGAGTGAGTGGAAACATTCAGGT
GGTTCCGCTTAATGAGCTAACGGAGGAGGTAGATGGGAGGACCGACGTCC
CGTCCGAGGTTCTGGCGTTCGCGCAATCATTGGGAGCAAGCACCGGCCTT
GCAACTTCACGGAAAAGGGTGCCATTCGTGGCATTTGCTAGAGCAAAACC
CAGCACCGTAAGGTCGAAAAGCACTCACAAGGCCGCTCCGAGGGCAAGGG
CAGGTGAAAATCCCAtatgaATGACCACAAGAACGCGAGCTAAAGCCAAT
GTTGGCAATGATGTTACGCctgccaaggagggcgtAGCAACGAGGCAGCG
GAGACAAGCATCCGactcctccggccctccctcccaaacgtccctcccac
ccattAAGAAAGCAGTGAAAAGGACTTCTAACGTGGACCAATcagacgac
gacgacgacaaaCCCGTAGAAATTCAGTCTCGTGCGATACGAGATGGTGA
GCGTGGCAATCACTCAAGGCCAAGCGGCTTGAATACACGGGTTAAAAAGC
GACCACGGAAAGTTAAGGAGCGCGAAAACAAATAttgggcggagaagggg
ggccATGAGGGTgcagggcaaggaagacCGGTGCATGAGGATGAAGGGGA
TGTACAgggcctctccgcccctAACCATGCCGCTACAGAAGCAAACGAGG
ATGGGCAGAAAAATGTGGAAGAGGCAAACAGACTTGTGGACCCTTCCTCG
GGAGATGAACCCTTGCCGGCGACTTTCTGGGAAGCAGTGCAACGGGCCAA
AGAAGCCGAGCAACAGCAACGCATCAATGAGGCTCTGCGGCGCGTGGAGA
CCAAGAGGGGAAAAACGAGTGAAGGAGAGCAAACGAGGTTCAAGAAAATC
GTGAAGATTCCTCGAGTGAGTGGAAACATTCAGGTGGTTCCGCTTAATGA
GCTAACGGAGGAGGTAGATGGGAGGACCGACGTCCCGTCCGAGGTTCTGG
CGTTCGCGCAATCATTGGGAGCAAGCACCGGCCTTGCAACTTCACGGAAA
AGGGTGCCATTCGTGGCATTTGCTAGAGCAAAACCCAGCACCGTAAGGTC
GAAAAGCACTCACAAGGCCGCTCCGAGGGCAAGGGCAGGTGAAAATCCCA
tatgaATGACCACAAGAACGCGAGCTAAAGCCAATGTTGGCAATGATGTT
ACGCctgccaaggagggcgtAGCAACGAGGCAGCGGAGACAAGCATCCGa
ctcctccggccctccctcccaaacgtccctcccacccattAAGAAAGCAG
TGAAAAGGACTTCTAACGTGGACCAATcagacgacgacgacgacaaaCCC
GTAGAAATTCAGTCTCGTGCGATACGAGATGGTGAGCGTGGCAATCACTC
AAGGCCAAGCGGCTTGAATACACGGGTTAAAAAGCGACCACGGAAAGTTA
AGGAGCGCGAAAACAAATAttgggcggagaaggggggccATGAGGGTgca
gggcaaggaagacCGGTGCATGAGGATGAAGGGGATGTACAgggcctctc
cgcccctAACCATGCCGCTACAGAAGCAAACGAGGATGGGCAGAAAAATG
TGGAAGAGGCAAACAGACTTGTGGACCCTTCCTCGGGAGATGAACCCTTG
CCGGCGACTTTCTGGGAAGCAGTGCAACGGGCCAAAGAAGCCGAGCAACA
GCAACGCATCAATGAGGCTCTGCGGCGCGTGGAGACCAAGAGGGGAAAAA
CGAGTGAAGGAGAGCAAACGAGGTTCAAGAAAATCGTGAAGATTCCTCGA
GTGAGTGGAAACATTCAGGTGGTTCCGCTTAATGAGCTAACGGAGGAGGT
AGATGGGAGGACCGACGTCCCGTCCGAGGTTCTGGCGTTCGCGCAATCAT
TGGGAGCAAGCACCGGCCTTGCAACTTCACGGAAAAGGGTGCCATTCGTG
GCATTTGCTAGAGCAAAACCCAGCACCGTAAGGTCGAAAAGCACTCACAA
GGCCGCTCCGAGGGCAAGGGCAGGTGAAAATCCCAtatgaATGACCACAA
GAACGCGAGCTAAAGCCAATGTTGGCAATGATGTTACGCctgccaaggag
ggcgtAGCAACGAGGCAGCGGAGACAAGCATCCGactcctccggccctcc
ctcccaaacgtccctcccacccattAAGAAAGCAGTGAAAAGGACTTCTA
ACGTGGACCAATcagacgacgacgacgacaaaCCCGTAGAAATTCAGTCT
CGTGCGATACGAGATGGTGAGCGTGGCAATCACTCAAGGCCAAGCGGCTT
GAATACACGGGTTAAAAAGCGACCACGGAAAGTTAAGGAGCGCGAAAACA
AATAttgggcggagaaggggggccATGAGGGTgcagggcaaggaagacCG
GTGCATGAGGATGAAGGGGATGTACAgggcctctccgcccctAACCATGC
CGCTACAGAAGCAAACGAGGATGGGCAGAAAAATGTGGAAGAGGCAAACA
GACTTGTGGACCCTTCCTCGGGAGATGAACCCTTGCCGGCGACTTTCTGG
GAAGCAGTGCAACGGGCCAAAGAAGCCGAGCAACAGCAACGCATCAATGA
GGCTCTGCGGCGCGTGGAGACCAAGAGGGGAAAAACGAGTGAAGGAGAGC
AAACGAGGTTCAAGAAAATCGTGAAGATTCCTCGAGTGAGTGGAAACATT
CAGGTGGTTCCGCTTAATGAGCTAACGGAGGAGGTAGATGGGAGGACCGA
CGTCCCGTCCGAGGTTCTGGCGTTCGCGCAATCATTGGGAGCAAGCACCG
GCCTTGCAACTTCACGGAAAAGGGTGCCATTCGTGGCATTTGCTAGAGCA
AAACCCAGCACCGTAAGGTCGAAAAGCACTCACAAGGCCGCTCCGAGGGC
AAGGGCAGGTGAAAATCCCAtatga

Synonyms

Publications