rna1085, rna1085 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1085
Unique Name	rna1085
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	429
Alignment location	CM002456.1:1151289..1153430 +

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Properties


Property Name	Value
Product	Choline transporter
Orig transcript id	gnl\|cribi\|Naga_100006g81.8657.mrna
Orig protein id	gnl\|cribi\|Naga_100006g81.8657
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1151289..1153430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g81	gene1046	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1085	rna1085-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29568.1	cds1084	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1151289..1153430+
coding sequence from alignment at CM002456.1:1151289..1153430+

mRNA sequence

>rna1085 ID=rna1085|Name=rna1085|organism=Nannochloropsis gaditana|type=mRNA|length=429bp
ATGACGTCGGCGCTCTCCTACTCCCTTCACCTAGCCTTGCTCTTTTCTCC
TCTCCTTTCTATTTTTTCCCTCATGCTCTTCCCAAGATTCTTTTTGCACG
CGGTGGCTCTCTCTTCATTTCGCTACTCTTCCTCCGTTTCCTCTTCTCTT
CCACGTCTTCCTTCGTTTTGTCCCCCACCTTTCCTTCCTTCGTTTCGTCC
TCCTCCTCGTCCTCCTCTGTTTCCTCCTCGTTTTCCTCCTCCATCTCCTC
CATCTCCTCCTTCATCTTTTAATCCTCCTCCTCCTCCTCAGCCTCGTCCT
CATCCTCCGCGTCCACGTCCTTCGCGTCCGCCTCCCTCTTCCTTTTCATT
TGCTTTGGCGTGCTTTCCCACGAGTCCTATGACAAGCGTGAAATGGCTCC
CATTTCGTCCTCGGAAACATCGGACCTAA

protein sequence of rna1085

>rna1085-protein ID=rna1085-protein|Name=rna1085|organism=Nannochloropsis gaditana|type=polypeptide|length=713bp
MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVR
RRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSS
VDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLT
YTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFA
TANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLAT
LRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAV
TVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVS
GRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQR
TVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTEL
FRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAI
LGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEEL
VQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSS
QAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAVERAVANFGG
GSSLLFGRGGGSVSRTPTLDVGEEEQEEEGEGGGEGGREGGREGEGEGGM
ETGMHGEEDVEEV

mRNA from alignment at CM002456.1:1151289..1153430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1085 ID=rna1085|Name=rna1085|organism=Nannochloropsis gaditana|type=mRNA|length=2142bp|location=Sequence derived from alignment at CM002456.1:1151289..1153430+ (Nannochloropsis gaditana)
ATGGACGATGAGGACATCCTCCTCGACAGTCGTGCTGTAGGGGGCAAGCG
TGGAGCAGATTTGGGGGCTCCTCTTTTGCTGCCGAGCTCATcagcaagtg
gaggagaCCAAGGGGGTTTTGGTGCAGCGTACGTCCCTGCCACGGtgcgg
cggcgacggctATGGTTCGACAACGTGTTTGGGGTGATCTTTGGTATATT
TGCCTTCGTCATGACTCTTTTGGCCTTGACGATAGGCGTCAAGGCGGTGA
TCAACAGGCGGACGCCGGCTGTGGTTGTATTGGATGAAGGTACCTCAAGC
GTGGACGACCCCGCCCATCCCGGCACTCGGCACGCCACCTACGAGGGCTT
CAAGCTCTTCTCGGGCCTCGCACTGATTTGTACTCTGGGCGTGGTGCTTT
CTGCGTTATGGTTGCAGGTGATGGTGACTTGCTCCTCTGCCCTCTTGACC
TATACCCTCATGGCTGTGGCCCTCCTTGGTCTTTTGGCTGGCACAGCGTT
CTTCGCAGGCGCCAACCCTTGGGCGGGCGTTGTCACCCTTCTTGTGACAG
TGATCGCTCTGGTCTATTTCCAGCAGCTCCGGAGGCGCATGGCCTTTGCA
ACAGCCAATTTGAAAATCGCGTGCAGGGCCCTATGGGATAGCCCCCCCTT
GTTGGGCGTCGGAGTGGGTCTCCTGCTTCTGCAAGTGTGCTGGGGGATAC
TCTGGGCACTGGCTTTGATGGGTGCGGCGACAAATGCGGACCTGGCGACC
CTGCGGGACCCGGTTTCGGGCCAGGTGTACCCCATGAGTCAATGCACGAC
CTATGAGACCCTGGGTCCCAACGGGAATTTTACGGCCGCCTGTCTCCACA
CGGGTCAGACCTGTCTGAAATGCGTGTGTGGGAGCGGGATTAGCGCCGTG
ACCGTCTGGGAGGATCGTTCGTGTTTTGCCTACAAGCTGTACGCGGGCTG
GCTCGTGGTTCTGCTGGCTGGCTTCTTGTGGGGAGGCGCGGTGGTCCGCA
ACGTGGGGCATTGCACCGTGTCCGGGACGGTGGGGACCTGGTGGgtgtcg
gggagggagcggggagcTGCGTCGGTGGGGAGTCATTTCCGACGGTCCTT
GTCCACCTCGTTTGGATCCATTTGTCTGGGTTCCCTGCTTGTGGCGCTCG
TGCAGACGGCCCGGCATGTTCTCTTGAACGCCCACCGGGCCAACCAACGG
ACGGTGCAGAGCAACACCATCACGGCCATGCTGGGctgtctcctcgtcct
ggtcGACCGGGCGCTGGCCTGGTTCAACCGATACGCCCTCGTGTATGTGG
CTCTGTACGGGTTGGATTTCATGTCGGCGGGCAAGGCGACGACGGAGCTC
TTTCGTGCCCGCGGGGTCACCGCCCTGGTCAACGACACCATGATCGAAGG
CGTCCTATCCCTTGGCGTGGTGATCGTGGGCTTGCTCTGTGCGTTGACGG
GGTACTTGTACGGGAGGGATTGGGGCATAAGCCAGGCGAACGTGGCGATT
CTGGGAGTGTCCGGCGCTTTTATCGGCGTGGGACTTGCAGGGGTGGTGTC
AGGTTTAGTGGAAAGCGCCGTTTGCACCACCTTTGTCCTTTTCGCGGAAG
ACCCGCAGTCCTTGGAGATCAgccatggaggggaggcgtgcgaggagctg
gtgcaggcctgggaggatGTGTTGCAGGGGCCCTTGtcggggatgggagg
gatggtgggaggggccgaaggagggcgtggacagGGAGGCTTCAAGCCAC
CGGTGCCGTCTCCTTCGCCACTTGAGGGCGATcgaccctcgccctcctcg
caggccccctcctcgtccgctgTGGGCCCGGGCATGGTCCCGCCTTACCC
CTCTTCGGCCTCGGTGAATCctgcgggaaaagggaaacgaGCGAGTCCGC
CCCCGGCGCCCGCGACAGCCGTAGAGAGGGCTGTGGCGAATTTTGGAGGT
GGGTCCTCTTTGTTGttcgggaggggtggagggagtgtGAGTCGGACGCC
GACCCTGgatgtgggggaggaggagcaagaggaagaaggggagggcgggg
gggagggcgggagggaaggagggcgggagggcgagggagaaggagggatg
gagacaGGGAtgcatggggaggaggacgtggaggaggtgtga

Coding sequence (CDS) from alignment at CM002456.1:1151289..1153430+

>rna1085 ID=rna1085|Name=rna1085|organism=Nannochloropsis gaditana|type=CDS|length=2142bp|location=Sequence derived from alignment at CM002456.1:1151289..1153430+ (Nannochloropsis gaditana)
ATGGACGATGAGGACATCCTCCTCGACAGTCGTGCTGTAGGGGGCAAGCG
TGGAGCAGATTTGGGGGCTCCTCTTTTGCTGCCGAGCTCATcagcaagtg
gaggagaCCAAGGGGGTTTTGGTGCAGCGTACGTCCCTGCCACGGtgcgg
cggcgacggctATGGTTCGACAACGTGTTTGGGGTGATCTTTGGTATATT
TGCCTTCGTCATGACTCTTTTGGCCTTGACGATAGGCGTCAAGGCGGTGA
TCAACAGGCGGACGCCGGCTGTGGTTGTATTGGATGAAGGTACCTCAAGC
GTGGACGACCCCGCCCATCCCGGCACTCGGCACGCCACCTACGAGGGCTT
CAAGCTCTTCTCGGGCCTCGCACTGATTTGTACTCTGGGCGTGGTGCTTT
CTGCGTTATGGTTGCAGGTGATGGTGACTTGCTCCTCTGCCCTCTTGACC
TATACCCTCATGGCTGTGGCCCTCCTTGGTCTTTTGGCTGGCACAGCGTT
CTTCGCAGGCGCCAACCCTTGGGCGGGCGTTGTCACCCTTCTTGTGACAG
TGATCGCTCTGGTCTATTTCCAGCAGCTCCGGAGGCGCATGGCCTTTGCA
ACAGCCAATTTGAAAATCGCGTGCAGGGCCCTATGGGATAGCCCCCCCTT
GTTGGGCGTCGGAGTGGGTCTCCTGCTTCTGCAAGTGTGCTGGGGGATAC
TCTGGGCACTGGCTTTGATGGGTGCGGCGACAAATGCGGACCTGGCGACC
CTGCGGGACCCGGTTTCGGGCCAGGTGTACCCCATGAGTCAATGCACGAC
CTATGAGACCCTGGGTCCCAACGGGAATTTTACGGCCGCCTGTCTCCACA
CGGGTCAGACCTGTCTGAAATGCGTGTGTGGGAGCGGGATTAGCGCCGTG
ACCGTCTGGGAGGATCGTTCGTGTTTTGCCTACAAGCTGTACGCGGGCTG
GCTCGTGGTTCTGCTGGCTGGCTTCTTGTGGGGAGGCGCGGTGGTCCGCA
ACGTGGGGCATTGCACCGTGTCCGGGACGGTGGGGACCTGGTGGgtgtcg
gggagggagcggggagcTGCGTCGGTGGGGAGTCATTTCCGACGGTCCTT
GTCCACCTCGTTTGGATCCATTTGTCTGGGTTCCCTGCTTGTGGCGCTCG
TGCAGACGGCCCGGCATGTTCTCTTGAACGCCCACCGGGCCAACCAACGG
ACGGTGCAGAGCAACACCATCACGGCCATGCTGGGctgtctcctcgtcct
ggtcGACCGGGCGCTGGCCTGGTTCAACCGATACGCCCTCGTGTATGTGG
CTCTGTACGGGTTGGATTTCATGTCGGCGGGCAAGGCGACGACGGAGCTC
TTTCGTGCCCGCGGGGTCACCGCCCTGGTCAACGACACCATGATCGAAGG
CGTCCTATCCCTTGGCGTGGTGATCGTGGGCTTGCTCTGTGCGTTGACGG
GGTACTTGTACGGGAGGGATTGGGGCATAAGCCAGGCGAACGTGGCGATT
CTGGGAGTGTCCGGCGCTTTTATCGGCGTGGGACTTGCAGGGGTGGTGTC
AGGTTTAGTGGAAAGCGCCGTTTGCACCACCTTTGTCCTTTTCGCGGAAG
ACCCGCAGTCCTTGGAGATCAgccatggaggggaggcgtgcgaggagctg
gtgcaggcctgggaggatGTGTTGCAGGGGCCCTTGtcggggatgggagg
gatggtgggaggggccgaaggagggcgtggacagGGAGGCTTCAAGCCAC
CGGTGCCGTCTCCTTCGCCACTTGAGGGCGATcgaccctcgccctcctcg
caggccccctcctcgtccgctgTGGGCCCGGGCATGGTCCCGCCTTACCC
CTCTTCGGCCTCGGTGAATCctgcgggaaaagggaaacgaGCGAGTCCGC
CCCCGGCGCCCGCGACAGCCGTAGAGAGGGCTGTGGCGAATTTTGGAGGT
GGGTCCTCTTTGTTGttcgggaggggtggagggagtgtGAGTCGGACGCC
GACCCTGgatgtgggggaggaggagcaagaggaagaaggggagggcgggg
gggagggcgggagggaaggagggcgggagggcgagggagaaggagggatg
gagacaGGGAtgcatggggaggaggacgtggaggaggtgtga

Synonyms

Publications