EWM29568.1, cds1084 (CDS) Nannochloropsis gaditana

Overview
NameEWM29568.1
Unique Namecds1084
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1151289..1153430 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29568.1
ProductCholine transporter
Orig transcript idgnl|cribi|Naga_100006g81.8657.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1151289..1153430 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Homology
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|585112139|gb|EWM29568.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 1420.6 bits (3676), Expect = 0.000e+0
Identity = 713/713 (100.00%), Postives = 713/713 (100.00%), Query Frame = 0
Query:    1 MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAVERAVANFGGGSSLLFGRGGGSVSRTPTLDVGEEEQEEEGEGGGEGGREGGREGEGEGGMETGMHGEEDVEEV 713
            MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAVERAVANFGGGSSLLFGRGGGSVSRTPTLDVGEEEQEEEGEGGGEGGREGGREGEGEGGMETGMHGEEDVEEV
Sbjct:    1 MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAVERAVANFGGGSSLLFGRGGGSVSRTPTLDVGEEEQEEEGEGGGEGGREGGREGEGEGGMETGMHGEEDVEEV 713          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|553191210|ref|XP_005855337.1| (hypothetical protein NGA_0093200 [Nannochloropsis gaditana CCMP526] >gi|422293712|gb|EKU21012.1| hypothetical protein NGA_0093200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1276.92 bits (3303), Expect = 0.000e+0
Identity = 640/642 (99.69%), Postives = 640/642 (99.69%), Query Frame = 0
Query:    1 MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAVE 642
            MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATA  
Sbjct:    1 MDDEDILLDSRAVGGKRGADLGAPLLLPSSSASGGDQGGFGAAYVPATVRRRRLWFDNVFGVIFGIFAFVMTLLALTIGVKAVINRRTPAVVVLDEGTSSVDDPAHPGTRHATYEGFKLFSGLALICTLGVVLSALWLQVMVTCSSALLTYTLMAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLEGDRPSPSSQAPSSSAVGPGMVPPYPSSASVNPAGKGKRASPPPAPATAAR 642          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|553192695|ref|XP_005855625.1| (hypothetical protein NGA_0598810 [Nannochloropsis gaditana CCMP526] >gi|422293431|gb|EKU20731.1| hypothetical protein NGA_0598810 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 221.09 bits (562), Expect = 3.520e-59
Identity = 144/435 (33.10%), Postives = 230/435 (52.87%), Query Frame = 0
Query:  134 SALWLQVMVTCSSALLTYTLMAV-------ALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGP 561
            SALW  +++  ++ ++T  L+          +L L+ G    A       ++  L+  I ++++  +R R+ FA+ NLK +  A    P +L +   + ++Q+ W +LW LA  G A       +   + G  + +SQCT  +T G       AC  + +T    V    +S   V +D S F+  +    + +L     WG  VV+NV  C+ +G V  WW SG+ +G   V   F R+ STSFGSIC GSL++A+++  R +L    R  QR    N +T ++ CL+ +++R +  FNRYA+VY A YG  F  +G  T ELF+  G+TA++ND + E  L+L  +I+ LL A+ G++YG  +G+      IL V G F G  ++ +V  ++++ V T FV+FAEDPQ+   SH     EEL QAW  +   P
Sbjct:  225 SALWTGILLRNAAHIITAALIGSIISSGVGVILALVYGNFVMA-------IMAGLMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIVV--IEGTSFLLSQCT--DTAG-------ACACSRETAEGVV---ALSEAGVCKDLSEFSANVSPLIMFLLFISLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGV--VSKSFFRASSTSFGSICFGSLILAVLRALRQMLHAGRRQGQR---ENALTCVVNCLMAIIERLMQIFNRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETALNLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIVMSVLDAGVATVFVVFAEDPQAFAQSHPA-LYEELAQAWAKIGYDP 632          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|585101254|gb|EWM21181.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 220.32 bits (560), Expect = 1.631e-58
Identity = 144/435 (33.10%), Postives = 230/435 (52.87%), Query Frame = 0
Query:  134 SALWLQVMVTCSSALLTYTLMAV-------ALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGP 561
            SALW  +++  ++ ++T  L+          +L L+ G    A       ++  L+  I ++++  +R R+ FA+ NLK +  A    P +L +   + ++Q+ W +LW LA  G A       +   + G  + +SQCT  +T G       AC  + +T    V    +S   V +D S F+  +    + +L     WG  VV+NV  C+ +G V  WW SG+ +G   V   F R+ STSFGSIC GSL++A+++  R +L    R  QR    N +T ++ CL+ +++R +  FNRYA+VY A YG  F  +G  T ELF+  G+TA++ND + E  L+L  +I+ LL A+ G++YG  +G+      IL V G F G  ++ +V  ++++ V T FV+FAEDPQ+   SH     EEL QAW  +   P
Sbjct:  288 SALWTGILLRNAAHIITAALIGSIISSGVGVILALVYGNFVMA-------IMAGLMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIVV--IEGTSFLLSQCT--DTAG-------ACACSRETAEGVV---ALSEAGVCKDLSEFSANVSPLIMFLLFISLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGV--VSKSFFRASSTSFGSICFGSLILAVLRALRQMLHAGRRQGQR---ENALTCVVNCLMAIIERLMQIFNRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETALNLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIVMSVLDAGVATVFVVFAEDPQAFAQSHPA-LYEELAQAWAKIGYDP 695          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|553181489|ref|XP_005853576.1| (hypothetical protein NGA_0598820, partial [Nannochloropsis gaditana CCMP526] >gi|422295487|gb|EKU22786.1| hypothetical protein NGA_0598820, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 213.772 bits (543), Expect = 1.227e-57
Identity = 142/431 (32.95%), Postives = 231/431 (53.60%), Query Frame = 0
Query:  134 SALWLQVMVTCSSALLTYTLMAVAL---LGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGP 561
            SALW  +++  ++ ++T  L+   +   +G++    +    N    ++  L+  I ++++  +R R+ FA+ NLK +  A    P +L +   + ++Q+ W +LW LA  G A       +   + G  + +SQCT  +T G       AC  + +T    V    +S   V +D S F+  +    + +L     WG  VV+NV  C+ +G V  WW SG+ +G   V   F R+ STSFGSIC GSL++A+++  R +L    R  QR    N +T ++ CL+ +++R +  FNRYA+VY A YG  F  +G  T ELF+  G+TA++ND + E  L+L  +I+ LL A+ G++YG  +G+      IL V G F G  ++ +V  ++++ V T FV+FAEDPQ+   SH     EEL QAW  +   P
Sbjct:   93 SALWTGILLRNAAHIITAALIGSIISSGVGVILALVY---GNFVMAIMAGLMGAIQVMWYYCVRDRIPFASMNLKCSATATLQYPSILFLAAVMTVVQMGWALLWQLAAYGVAVTKGAEIV--VIEGTSFLLSQCT--DTAG-------ACACSRETAEGVV---ALSEAGVCKDLSEFSANVSPLIMFLLFISLFWGSLVVKNVLFCSAAGMVADWWYSGQNKGV--VSKSFFRASSTSFGSICFGSLILAVLRALRQMLHAGRRQGQR---ENALTCVVNCLMAIIERLMQIFNRYAMVYCATYGTGFRESGTKTFELFKRAGLTAIINDDLAETALNLVALIIALLTAVVGFVYGTMFGLGGNWPVILAVVGFFAGFFVSLIVMSVLDAGVATVFVVFAEDPQAFAQSHPA-LYEELAQAWAKIGYDP 500          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|698806066|ref|XP_009836062.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574108899|gb|ETV74404.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 207.223 bits (526), Expect = 2.231e-55
Identity = 151/476 (31.72%), Postives = 231/476 (48.53%), Query Frame = 0
Query:   98 TSSVDDPAHPGTRH---ATYEGFKLFSGLA--LICTLGVVLSALWLQVMVTCSSALLTYTL-MAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVL--LNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGR----DWGI-----SQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWED 556
            TS +D   H  + H   A ++ F +  G++  LI    VV SALW+QV++ C+  ++ + L M V ++   A  + F   NP+ G+  LL   I + Y   ++ R+AFA+A+LK+AC AL +   +  + +  + +QV W + W+L+ +G      L    DP          C   E+ G                   +CG     VT++                 LL    WG  V++NV  CTV+GTV TWW + R   A  V     RSL++SFGSIC GSL+VA++Q  R ++  +    A    V    +  +  C+L  ++  + +FN +A  YV +YG DF SAGKA  +LF +RG TA++ND +    LS+G   VG+L  + G +  +    DW +           I G  G   G  +A +++ LV +A+ T FV FAEDP S + SH  E   EL+  W  
Sbjct:   65 TSGLDYLKHFESEHPSQAAHKSFTMVLGVSGGLI-GFAVVFSALWIQVLMACAENMIRFALWMNVGMMFGFAIMSMFV--NPFMGLFFLLGAAINICYINAVQNRIAFASAHLKLACVALSNHKSIFALALLFIFVQVAWLVTWSLSAVGVY---QLFRSADP---------SCEQEESRGE------------------LCGGAGFNVTIF----------------FLLVSVYWGQQVIQNVMTCTVAGTVATWWYNARTESA--VAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDNVGLACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRSAGKAVMQLFDSRGWTAVINDDLSSTALSIGAFGVGVLTGVIGLVVAKFAPVDWTVGFGADDTTRYVIFGGLGFIAGFSMAMILANLVITALHTIFVCFAEDPVSFQRSH-PEHYNELILTWRH 488          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|673045667|ref|XP_008876794.1| (hypothetical protein H310_11800 [Aphanomyces invadans] >gi|574467456|gb|ETV94479.1| hypothetical protein H310_11800 [Aphanomyces invadans])

HSP 1 Score: 204.142 bits (518), Expect = 2.948e-54
Identity = 151/476 (31.72%), Postives = 230/476 (48.32%), Query Frame = 0
Query:   98 TSSVDDPAHPGTRH---ATYEGFKLFSGLA-LICTLGVVLSALWLQVMVTCSSALLTYTL-MAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCG-SGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVL--LNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGR----DW-----GISQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWED 556
            TS +D   H    H   A  + F +  G++  +  L VV SALW+QV++ C+  ++ + L M V L+   A  + F   NP+ G+  LL   I + Y   ++ R+AFA+A+LK+AC AL     +  + +  +L+QV W I W+++ +G      L  + DP          C   E+ G                   +CG +G +                   +  LL    WG  V++NV  CTV+GTV TWW +     A  V     RSL++SFGSIC GSL+VA++Q  R ++  +    A         +  +  C+L  ++  + +FN +A  YV +YG DF +AGKA  +LF +RG TA++ND +    LS+G   VG+L  + G +  +    DW     G       I GV G   GV +A +++ LV +A+ T FV FAEDP S + SH  E   EL+  W  
Sbjct:   67 TSGLDYLKHFEEEHPSQAAQKSFTMVLGVSGSLIGLSVVFSALWIQVLMACAENMIRFALWMNVGLMFGFAIMSLFV--NPFVGLFFLLGAAINICYINAVQNRIAFASAHLKLACVALSKHKSIFVLALFFILVQVAWLITWSVSAVGVY---QLFRVADP---------NCEKEESHGT------------------LCGGTGFNVA-----------------IFFLLVSVYWGQQVIQNVMTCTVAGTVATWWYNTHTDRA--VAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDNAALACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRTAGKAVMQLFDSRGWTAVINDDLSSTALSIGAFGVGVLTCVVGLVVAKFAPADWVAGFGGDDTTRYVIFGVLGFIAGVSMAMILANLVITALHTIFVCFAEDPVSFQRSH-PEHYNELILTWRH 490          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|698781887|ref|XP_009823987.1| (hypothetical protein H257_02163 [Aphanomyces astaci] >gi|574121711|gb|ETV87188.1| hypothetical protein H257_02163 [Aphanomyces astaci])

HSP 1 Score: 197.208 bits (500), Expect = 1.632e-51
Identity = 153/492 (31.10%), Postives = 240/492 (48.78%), Query Frame = 0
Query:  131 VVLSALWLQVMVTCSSALLTYTLMAVALLGLLA----GTAFFA--GANPWAGVVTLLVTVIALV---YFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQC---TTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRE-RGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLV---DRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGIS---QANVAI-----------LGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDVLQGPLSGMGGMVGGAEGGRGQGGFKPPVPSPSPLE 592
            VVLS +W  +M+     LL +    VA++G+ A    G+ F    G N +  V   L T++AL+   Y   +RRR+AFA+ NLKIACRA+   P LL +  G+ ++   W ++W+ A      + +            Y +SQ         L P+G         G T                 +R    + ++ G L+V    F W   VVRN+ H TVSGTV +WW +  E R   +  +   R+++ SFGSIC GS +V++++T + +++       ++ Q++    +LGCL  ++    R + +FN+YA  YV +YG  F+ +GK T ELF   G +A+ ND++I+ VL +G ++VG   A  G     +W +S     N ++           LG SG  IG  +  +V  ++ S+V T FVLFAEDPQSL+ SH  +   +L  AW+++   P+               QGG  PP  S  P +
Sbjct:   89 VVLSMVWTGIMLVMGK-LLIWIAAIVAIVGVFAAGVLGSYFMKDGGDNTFFWVPATLGTLLALILTIYVCCIRRRIAFASVNLKIACRAVLTYPVLLLIAFGMTIVIALWCLVWSAATYATMNHGE------------YILSQVPGLNVSANLNPDG--------YGNT-----------------ER----FSIFFGMLLV----FFWTVFVVRNIVHVTVSGTVASWWYNSDENRKPMTSTTALCRAMTLSFGSICFGSFIVSVIETIKAIIMFFRHLASKS-QNSVAVCLLGCLECIIGCISRLVQYFNKYAYSYVGIYGFSFLRSGKETWELFDKMGWSAIANDSLIDNVLMVGAIMVGFTGAAAG-----NWAVSYDKHHNNSVWTQNLSQPALTLGTSGFLIGFAICYIVMSVINSSVATAFVLFAEDPQSLQRSHPDDH-NDLHAAWKEIY--PVE--------YAASSNQGG-APPAGSSKPTQ 516          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|698806064|ref|XP_009836061.1| (hypothetical protein H257_10993 [Aphanomyces astaci] >gi|574108898|gb|ETV74403.1| hypothetical protein H257_10993 [Aphanomyces astaci])

HSP 1 Score: 196.052 bits (497), Expect = 3.529e-51
Identity = 152/492 (30.89%), Postives = 231/492 (46.95%), Query Frame = 0
Query:   98 TSSVDDPAHPGTRH---ATYEGFKLFSGLA--LICTLGVVLSALWLQVMVTCSSALLTYTL-MAVALLGLLAGTAFFAGANPWAGVVTLLVTVIALVYFQQLRR----------------RMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRERGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVL--LNAHRANQRTVQSNTITAMLGCLLVLVDRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGR----DWGI-----SQANVAILGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWED 556
            TS +D   H  + H   A ++ F +  G++  LI    VV SALW+QV++ C+  ++ + L M V ++   A  + F   NP+ G+  LL   I + Y +  R                 R+AFA+A+LK+AC AL +   +  + +  + +QV W + W+L+ +G      L    DP          C   E+ G                   +CG     VT++                 LL    WG  V++NV  CTV+GTV TWW + R   A  V     RSL++SFGSIC GSL+VA++Q  R ++  +    A    V    +  +  C+L  ++  + +FN +A  YV +YG DF SAGKA  +LF +RG TA++ND +    LS+G   VG+L  + G +  +    DW +           I G  G   G  +A +++ LV +A+ T FV FAEDP S + SH  E   EL+  W  
Sbjct:   65 TSGLDYLKHFESEHPSQAAHKSFTMVLGVSGGLI-GFAVVFSALWIQVLMACAENMIRFALWMNVGMMFGFAIMSMFV--NPFMGLFFLLGAAINIWYCRPCRHVSSHVSWTSYINAVQNRIAFASAHLKLACVALSNHKSIFALALLFIFVQVAWLVTWSLSAVGVY---QLFRSADP---------SCEQEESRGE------------------LCGGAGFNVTIF----------------FLLVSVYWGQQVIQNVMTCTVAGTVATWWYNARTESA--VAGSLYRSLTSSFGSICFGSLIVAVLQALRTIVRTIKNKAAEDDNVGLACVACLAECILNCIESLVEYFNMWAYTYVGIYGFDFRSAGKAVMQLFDSRGWTAVINDDLSSTALSIGAFGVGVLTGVIGLVVAKFAPVDWTVGFGADDTTRYVIFGGLGFIAGFSMAMILANLVITALHTIFVCFAEDPVSFQRSH-PEHYNELILTWRH 504          
BLAST of EWM29568.1 vs. NCBI_GenBank
Match: gi|673023364|ref|XP_008865643.1| (hypothetical protein H310_03524 [Aphanomyces invadans] >gi|574478871|gb|ETW05866.1| hypothetical protein H310_03524 [Aphanomyces invadans])

HSP 1 Score: 194.512 bits (493), Expect = 1.348e-50
Identity = 145/454 (31.94%), Postives = 226/454 (49.78%), Query Frame = 0
Query:  131 VVLSALWLQVMVTCSSALLTYTLMAVALLGLLA----GTAFFA--GANPWAGV-VTL--LVTVIALVYFQQLRRRMAFATANLKIACRALWDSPPLLGVGVGLLLLQVCWGILWALALMGAATNADLATLRDPVSGQVYPMSQCTTYETLGPNGNFTAACLHTGQTCLKCVCGSGISAVTVWEDRSCFAYKLYAGWLVVLLAGFLWGGAVVRNVGHCTVSGTVGTWWVSGRE-RGAASVGSHFRRSLSTSFGSICLGSLLVALVQTARHVLLNAHRANQRTVQSNTITAMLGCLLVLV---DRALAWFNRYALVYVALYGLDFMSAGKATTELFRARGVTALVNDTMIEGVLSLGVVIVGLLCALTGYLYGRDWGIS---QANVAI-----------LGVSGAFIGVGLAGVVSGLVESAVCTTFVLFAEDPQSLEISHGGEACEELVQAWEDV 557
            VVLS +W  VM+     LL +    VA++G+ A    G+ F    G + +  V  TL  L+ VI  +Y   +RRR+AFA+ NLKIACRA+   P LL +  G+ ++   W ++W++A      + +    + P         +      L P+G  T   L                              ++ G L+V    F W   VVRN+ H TVSGTV +WW +  E R   +  +   R+++ SFGSIC GS +V++++T + +++       ++ Q+     +LGCL  ++    R + +FN+YA  YV +YG  F+ +GK T ELF   G +A+ ND++I+ VL +G V+VG   A  G     +W +S     N ++           LG SG  IG  +  +V  ++ S+V T FVLFAEDPQSL+ SH  E   +L  AW+++
Sbjct:   89 VVLSMIWTGVMLVMGK-LLIWIAAIVAIVGVFAAGILGSYFMKDGGDDTFFWVPATLGTLLAVILTIYVCCIRRRIAFASVNLKIACRAVLTYPVLLLIAFGMTIVIAIWCLVWSVATYATMNHGEYILSKVP---------ELNASAHLNPDGYGTTQRL-----------------------------SIFFGMLLV----FFWTVFVVRNIVHVTVSGTVASWWYNSDENRKPMTSTTALCRAMTLSFGSICFGSFIVSVIETIKAIVMFFRHLASKS-QNAVAVCLLGCLECIIGCISRLVQYFNKYAYSYVGIYGFSFLRSGKETWELFDKMGWSAIANDSLIDNVLMVGAVMVGFTGAAAG-----NWAVSYDKHHNSSMWTQNLSHPALTLGTSGFLIGFAICYIVMSVINSSVATAFVLFAEDPQSLQRSH-PEDHNDLHAAWKEI 492          
The following BLAST results are available for this feature:
BLAST of EWM29568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112139|gb|EWM29568.1|0.000e+0100.00Choline transporter [Nannochloropsis gaditana][more]
gi|553191210|ref|XP_005855337.1|0.000e+099.69hypothetical protein NGA_0093200 [Nannochloropsis ... [more]
gi|553192695|ref|XP_005855625.1|3.520e-5933.10hypothetical protein NGA_0598810 [Nannochloropsis ... [more]
gi|585101254|gb|EWM21181.1|1.631e-5833.10Choline transporter [Nannochloropsis gaditana][more]
gi|553181489|ref|XP_005853576.1|1.227e-5732.95hypothetical protein NGA_0598820, partial [Nannoch... [more]
gi|698806066|ref|XP_009836062.1|2.231e-5531.72hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|673045667|ref|XP_008876794.1|2.948e-5431.72hypothetical protein H310_11800 [Aphanomyces invad... [more]
gi|698781887|ref|XP_009823987.1|1.632e-5131.10hypothetical protein H257_02163 [Aphanomyces astac... [more]
gi|698806064|ref|XP_009836061.1|3.529e-5130.89hypothetical protein H257_10993 [Aphanomyces astac... [more]
gi|673023364|ref|XP_008865643.1|1.348e-5031.94hypothetical protein H310_03524 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1085rna1085Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications