rna1083, rna1083 (mRNA) Nannochloropsis gaditana

Overview
Namerna1083
Unique Namerna1083
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1335
Alignment locationCM002456.1:1148330..1149458 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g83.8601.mrna
Orig protein idgnl|cribi|Naga_100006g83.8601
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1148330..1149458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g83gene1044Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1083rna1083-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29512.1cds1082Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1083 ID=rna1083|Name=rna1083|organism=Nannochloropsis gaditana|type=mRNA|length=1335bp
ATGGTCTGCTCCCGGTCTACGCAGGTGATTAGCATAGTGCTAGGAGCATC
TTGTATTTGTTGGTATTCAATCATCACGGGCAGCGGAACGTCAAGAGGTG
AAAATTTCTTGTTCAAAGCTGTAACGATGACAGCAAAAGACCTCTCGGCC
TCCGATGTCACTGACTGCGGAAACGCTAGCGGCATCGGAAGCAGCAGCAT
CGATGCTCGAACAGCTAGCGGGATAAATATGACAAATCTGGCTTGTCCAG
CATTTGACGACCGGCCAAGCAGGTTCCCCTCTAACTTTTGGTATGTGAAG
AATCCTAAGACAAGTAGCAGTACCCTCGCAGGCGTATTTCGTAGCGTAGC
CGCGCATCACGCTGTCATCATGCTCAATCCGGCTAAAACACATATGAGCG
TCAAAGAAGTGGAAGATACCAAGCAGAAGGTTATAAGTGCAGTACAAAGT
CGCCACAGTGAGCCACCTCGACTGGGCCTGTCCAATCATGTACGATTTAA
CTCAGGAATTCGTGATACCCTAGAGTTGAACGGGCCTCTCTTGTTATTTA
CCTCAGTGAGGGAGCCAATTGATCGATTTTATTCCTTCTTCATTGAGCAA
TGCCAAAATTCGAAATTCGGAAAAAATGTAGACTGCTTTGGTGAAGCAGT
GGATGAGAAACTCCAAATGGCTACCACAATGGAGCCGAATTCTCAGCTAG
CTGTCATTCGAGGGAACGCAACAGACATCAAGAGTGCAGTAGCTCAGTAC
GACTTCATTTTCGTCCGAGAACGCTTCGACGAGTCTTTGGTAGTGTTCAT
GATATTGTATGGACTGGATTTCGCCGACATCGTCCATTTATCGTCAAAAG
TGCGCACGGGAAAGTATCCCGGCGCCGCCAAGATGCCACCGGCGCTCAAC
AACCTGATACGGACCAATAGCCAGGAAGATGTAAAACTATGGGTCACAGC
AAATGCCCTTTTGGATGAGAAAATTGCGGGCATAAATGAAAAATGTGGAG
GTGAAGCTTACATGGCGTCTACGTTAGCCGCATTTAATCGTCTGCAAGAT
ACTGTGGCAAATGTGTGTCGCGAGCACAAAAAGTGGTACTCGGACCACGG
ATTTTCGACAGTCTTCACATACTGGGGTGACAATGGACAGGCACCAAGGT
GCTGTGATTTTGTTGTCCGGCGGGAAATCCATAGATGGCAAAACGAAGGC
CGAAACCATGCAATTCAAGTCGGAGGAACGGCGGGGGCATCATCGAATTC
ATCAGGAGGAGATGTATCGAGCGCTTACAAAGCAGACGCTTTTGCGATGC
CGAAAAAGACACTATTGCGGAGTGAGCAGCACTGA
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protein sequence of rna1083

>rna1083-protein ID=rna1083-protein|Name=rna1083|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MGIMQGILEEPSKVGRSVSSEVGKAHKNSEQDSVVGSTRMKDSGRKRLRC
GYEDARRFHIPCFYITSHLGDPYAVTGIYRLHGHLHLGEIWAFFKALDKS
KDSMRGPGQHEPHTKLLLRRYRHVPRTGTAEWEHSTAFVLSFVADGYTSR
RRIYWLTRTFPIRWERIRRFP
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mRNA from alignment at CM002456.1:1148330..1149458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1083 ID=rna1083|Name=rna1083|organism=Nannochloropsis gaditana|type=mRNA|length=1129bp|location=Sequence derived from alignment at CM002456.1:1148330..1149458- (Nannochloropsis gaditana)
ATGGGTATTATGCAAGGAATCCTGGAAGAGCCTTCCAAAGTCGGTCGTAG
CGTGTCGTACAGGGAATGGTTGCGGCACTTCGGCATACATTGGCAAAGCG
CACGAATACTACTAGTAGATACTGATTGATACCTATTGGGGCCGGTAGAA
GTTCTGAAGTTGGCAAGGCACATAAAAATGTAGGTGCTGAGTGGTTGCTA
CAGGGACGAGGAGGTTGGAAGGCGGTTAGGGGAGGTTCGGGCAACCGTTA
CTTTGAAAGGTAACGGCCCCGTGAGTCACGCCGAACGAGGCATGCGGGAT
TCCGGGCCAATTGGATAGTGCTTCCGCGCACCACGAAACTAAGAATTTCT
CTTTGTCTAATTACTTGAACTGCTTCTGATGCGGAGAACTTTTTCTTCAC
AGAGCGAGCAAGACTCAGTGGTGGGTTCAACTCGCATGAAAGACTCCGGG
CGAAAGCGACTTCGATGTGGCTACGAGGACGCACGCAGGTTTCATATACC
ATGCTTCTATATCACTTCGCATTTAGGTGATCCCTATGGTAGGTTAGAGC
GTCACACCAACGCGATGCACCCCGATAAATCTGTCAGAGTGTGGCGTAAA
ACCGACGACAATTGTGTTAGATCATGCCGCCAGCAATTCCAAAAAACACG
CTCTTGAGAGCTACCCTGAGCTCAAGTTTGGCAAGTGAAGGGAAACTCGG
GTACAGAAAGCATTTTGCATTGCACGTTCACTTACGGGGAAAAACGACAG
CCGTGACAGGAATTTATCGTCTACATGGCCACCTTCATTTGGGGGAGATT
TGGGCCTTTTTCAAGGCTCTAGATAAATCCAAGGACAGCATGCGGGGACC
TGGCCAACATGAACCGCACACTAAGTTGTTGCTGCGCCGCTACAGGCATG
TCCCTAGGACCGGGACGGCCGAGGTAGGCAGTTGCCACGTGACGTCCTGG
CTTGGCACATCTCGGTAGCGGAGGAGGGGTGTACCTGGGCTGTAATTGAC
TGGAAGTGGGAGCATAGTACAGCTTTTGTCTTGTCGTTTGTGGCGGATGG
CTACACGTCCCGGCGACGCATCTATTGGCTGACAAGGACCTTTCCCATAA
GATGGGAACGTATCCGGCGGTTCCCATAA
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Coding sequence (CDS) from alignment at CM002456.1:1148330..1149458-

>rna1083 ID=rna1083|Name=rna1083|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002456.1:1148330..1149458- (Nannochloropsis gaditana)
TGGGAGCATAGTACAGCTTTTGTCTTGTCGTTTGTGGCGGATGGCTACAC
GTCCCGGCGACGCATCTATTGGCTGACAAGGACCTTTCCCATAAGATGGG
AACGTATCCGGCGGTTCCCATAACCGTGACAGGAATTTATCGTCTACATG
GCCACCTTCATTTGGGGGAGATTTGGGCCTTTTTCAAGGCTCTAGATAAA
TCCAAGGACAGCATGCGGGGACCTGGCCAACATGAACCGCACACTAAGTT
GTTGCTGCGCCGCTACAGGCATGTCCCTAGGACCGGGACGGCCGAGAGCG
AGCAAGACTCAGTGGTGGGTTCAACTCGCATGAAAGACTCCGGGCGAAAG
CGACTTCGATGTGGCTACGAGGACGCACGCAGGTTTCATATACCATGCTT
CTATATCACTTCGCATTTAGGTGATCCCTATGAAGTTCTGAAGTTGGCAA
GGCACATAAAAATATGGGTATTATGCAAGGAATCCTGGAAGAGCCTTCCA
AAGTCGGTCGTAGCGTTGGGAGCATAGTACAGCTTTTGTCTTGTCGTTTG
TGGCGGATGGCTACACGTCCCGGCGACGCATCTATTGGCTGACAAGGACC
TTTCCCATAAGATGGGAACGTATCCGGCGGTTCCCATAACCGTGACAGGA
ATTTATCGTCTACATGGCCACCTTCATTTGGGGGAGATTTGGGCCTTTTT
CAAGGCTCTAGATAAATCCAAGGACAGCATGCGGGGACCTGGCCAACATG
AACCGCACACTAAGTTGTTGCTGCGCCGCTACAGGCATGTCCCTAGGACC
GGGACGGCCGAGAGCGAGCAAGACTCAGTGGTGGGTTCAACTCGCATGAA
AGACTCCGGGCGAAAGCGACTTCGATGTGGCTACGAGGACGCACGCAGGT
TTCATATACCATGCTTCTATATCACTTCGCATTTAGGTGATCCCTATGAA
GTTCTGAAGTTGGCAAGGCACATAAAAATATGGGTATTATGCAAGGAATC
CTGGAAGAGCCTTCCAAAGTCGGTCGTAGCGTTGGGAGCATAGTACAGCT
TTTGTCTTGTCGTTTGTGGCGGATGGCTACACGTCCCGGCGACGCATCTA
TTGGCTGACAAGGACCTTTCCCATAAGATGGGAACGTATCCGGCGGTTCC
CATAACCGTGACAGGAATTTATCGTCTACATGGCCACCTTCATTTGGGGG
AGATTTGGGCCTTTTTCAAGGCTCTAGATAAATCCAAGGACAGCATGCGG
GGACCTGGCCAACATGAACCGCACACTAAGTTGTTGCTGCGCCGCTACAG
GCATGTCCCTAGGACCGGGACGGCCGAGAGCGAGCAAGACTCAGTGGTGG
GTTCAACTCGCATGAAAGACTCCGGGCGAAAGCGACTTCGATGTGGCTAC
GAGGACGCACGCAGGTTTCATATACCATGCTTCTATATCACTTCGCATTT
AGGTGATCCCTATGAAGTTCTGAAGTTGGCAAGGCACATAAAAATATGGG
TATTATGCAAGGAATCCTGGAAGAGCCTTCCAAAGTCGGTCGTAGCGTTG
GGAGCATAGTACAGCTTTTGTCTTGTCGTTTGTGGCGGATGGCTACACGT
CCCGGCGACGCATCTATTGGCTGACAAGGACCTTTCCCATAAGATGGGAA
CGTATCCGGCGGTTCCCATAACCGTGACAGGAATTTATCGTCTACATGGC
CACCTTCATTTGGGGGAGATTTGGGCCTTTTTCAAGGCTCTAGATAAATC
CAAGGACAGCATGCGGGGACCTGGCCAACATGAACCGCACACTAAGTTGT
TGCTGCGCCGCTACAGGCATGTCCCTAGGACCGGGACGGCCGAGAGCGAG
CAAGACTCAGTGGTGGGTTCAACTCGCATGAAAGACTCCGGGCGAAAGCG
ACTTCGATGTGGCTACGAGGACGCACGCAGGTTTCATATACCATGCTTCT
ATATCACTTCGCATTTAGGTGATCCCTATGAAGTTCTGAAGTTGGCAAGG
CACATAAAAATATGGGTATTATGCAAGGAATCCTGGAAGAGCCTTCCAAA
GTCGGTCGTAGCGTTGGGAGCATAGTACAGCTTTTGTCTTGTCGTTTGTG
GCGGATGGCTACACGTCCCGGCGACGCATCTATTGGCTGACAAGGACCTT
TCCCATAAGATGGGAACGTATCCGGCGGTTCCCATAACCGTGACAGGAAT
TTATCGTCTACATGGCCACCTTCATTTGGGGGAGATTTGGGCCTTTTTCA
AGGCTCTAGATAAATCCAAGGACAGCATGCGGGGACCTGGCCAACATGAA
CCGCACACTAAGTTGTTGCTGCGCCGCTACAGGCATGTCCCTAGGACCGG
GACGGCCGAGAGCGAGCAAGACTCAGTGGTGGGTTCAACTCGCATGAAAG
ACTCCGGGCGAAAGCGACTTCGATGTGGCTACGAGGACGCACGCAGGTTT
CATATACCATGCTTCTATATCACTTCGCATTTAGGTGATCCCTATGAAGT
TCTGAAGTTGGCAAGGCACATAAAAATATGGGTATTATGCAAGGAATCCT
GGAAGAGCCTTCCAAAGTCGGTCGTAGCGT
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Synonyms
Publications