rna1082, rna1082 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1082
Unique Name	rna1082
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1238
Alignment location	CM002456.1:1145729..1147156 +

Link to JBrowse

Properties


Property Name	Value
Product	Sulfotransferase
Orig transcript id	gnl\|cribi\|Naga_100006g84.8686.mrna
Orig protein id	gnl\|cribi\|Naga_100006g84.8686
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1145729..1147156 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g84	gene1043	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1082	rna1082-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29597.1	cds1081	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1145729..1147156+
coding sequence from alignment at CM002456.1:1145729..1147156+

mRNA sequence

>rna1082 ID=rna1082|Name=rna1082|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp
GCGACGGTTGCTCGTAGACTGCCGGTGCACTTATCGAGGCTGGCATGCTC
GTCATCTTACGGTCTCCTGGTGTCGTGCAACCTCCCGTTTTCTTTTCTGT
AACTTCACTTTCCCTCCACTACAGCAGACACGGACTCCCTCGGAGACCTC
CCCAGCTCCCCCACCATCGCGTGTATATTTGATACAAGCTTGGATCTACT
GACAGACTCGACAGCATTGCACAACTTGCGTGGACGCAGGCTAGACACAC
ATGCGGTCTTACCAAGTCGGTGGGCTCAGTACGCCGCACTACACAGGATC
AGGACACTACCGTCGACACAGTAGCAGCGGAGGCGGGGGAGGAGGGAGCA
GCGGCTTGCTGGAGTATTTGCGGAGGATTGTTGACCCCAACCAGATGGAC
TTCGACGCGGCGTTTGAAGACATCCTGATGCTCTGCTCTTCTCACCCTCA
GCGAATGTACAAAATGGCTTCCTACAGAAAACACACTAAAAATCACTGGG
CGAGGGATGACCCGGCTTTGGCCGTCATACAGATCGCCTTCTTGCTTGTT
TCTTCTTCAGCCTACGCCCTAGCCTTCCACGTGCGGGGAGGTCCAGTTCA
TTACCTCTTTTTGGCTCTGCGTGCCATTCTTTTCGACTGGCTCTTGGTAG
GCTTGGTCGTGGCGACAGTGTGCCGGTCAGTGGCAAACCGGTACCTCTTA
GAGCTCCGGTCGCACAGCGTCGAACAGGAAGTGGAGTGGCGCTACGCTTT
CGACATCCACTGCAACGCGTTTTTGCCTTTCTTCCTCCTCACCTCCGTCC
TCCATTATTTCCTCCTTCCCCTCCTCCTCCGCCCCTCCCTCATGGCTTTG
ATCGTCTCCAACGCCATCTTCGGGGCTGCCTTTGCTGTGTATTTCTACGT
CACACACCTGGGCTACCGCGCCCTGCCTTTCCTGCACCGGACCGAGGTGT
TCCTCTACCCGTCCATCCTGGCTGTGCTCCTCTTCTTCCTGTTCCTAGTC
CTAGGCATGCTCGGGGAGCCCTACCGGATCCAAGCGACGCGGACCATGGC
CAGGCTCTACTACCGATGAGGCGGCTTCAGCCGCGTAGAGGTAGCATGTA
GGAAGAAAATAGCGGAGTAAAGCAGTGCCTCCACCGAGACGCGGCCCGCA
AGGACAGAGAACAAAGTAATGTTGGATAGGATGAGAACTTTCCCCCCATG
GCAAAGAGGATCTGGAGGAGGATCAGGCGATGCTAGCA

protein sequence of rna1082

>rna1082-protein ID=rna1082-protein|Name=rna1082|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MVCSRSTQVISIVLGASCICWYSIITGSGTSRGENFLFKAVTMTAKDLSA
SDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVK
NPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQS
RHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQ
CQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQY
DFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALN
NLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQD
TVANVCREHKKWYSDHGFSTVFTYWGDNGQAPRCCDFVVRREIHRWQNEG
RNHAIQVGGTAGASSNSSGGDVSSAYKADAFAMPKKTLLRSEQH

mRNA from alignment at CM002456.1:1145729..1147156+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1082 ID=rna1082|Name=rna1082|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp|location=Sequence derived from alignment at CM002456.1:1145729..1147156+ (Nannochloropsis gaditana)
ATGGTCTGCTCCCGGTCTACGCAGGTGATTAGCATAGTGCTAGGAGCATC
TTGTATTTGTTGGTATTCAATCATCACGGGCAGCGGAACGTCAAGAGGTG
AAAATTTCTTGTTCAAAGCTGTAACGATGACAGCAAAAGACCTCTCGGGt
atgccttttttccctcctacTTTTCGGGGATGAGGATAGTGTAAGCTCTG
ACGAAGTCTAGAATTCATTTACGAACGATTACACAACACAGCCTCCGATG
TCACTGACTGCGGAAACGCTAGCGGCATcggaagcagcagcatcgaTGCT
CGAACAGCTAGCGGGATAAATATGACAAATCTGGCTTGTCCAGCATTTGA
CGACCGGCCAAGCAGGTTCCCCTCTAACTTTTGGTATGTGAAGAATCCTA
AGACAAGTAGCAGTACCCTCGCAGGCGTATTTCGTAGCGTAGCCGCGCAT
CACGCTGTCATCATGCTCAATCCGGCTAAAACACATATGAGCGTCAAAGA
AGTGGAAGATACCAAGCAGAAGGTTATAAGTGCAGTACAAAGTCGCCACA
GTGAGCCACCTCGACTGGGCCTGTCCAATCATGTACGATTTAACTCAGGA
ATTCGTGATACCCTAGAGTTGAACGGGCCTCTCTTGTTATTTACCTCAGT
GAGGGAGCCAATTGATCGATTTTATTCCTTCTTCATTGAGCAATGCCAAA
ATTCGAAATTCGGAAAAAATGTAGACTGCTTTGGTGAAGCAGTGGATGAG
AAACTCCAAATGGCTACCACAATGGAGCCGAATTCTCAGCTAGCTGTCAT
TCGAGGGAACGCAACAGACATCAAGAGTGCAGTAGCTCAGTACGACTTCA
TTTTCGTCCGAGAACGCTTCGACGAGTCTTTGGTAGTGTTCATGATATTG
TATGGACTGGATTTCGCCGACATCGTCCATTTATCGTCAAAAGTGCGCAC
GGGAAAGTATCCCGGCGCCGCCAAGATGCCACCGGCGCTCAACAACCTGA
TACGGACCAATAGCCAGGAAGATGTAAAACTATGGGTCACAGCAAATGCC
CTTTTGGATGAGAAAATTGCGGGCATAAATGAAAAATGTGGAGGTGAAGC
TTACATGGCGTCTACGTTAGCCGCATTTAATCGTCTGCAAGATACTGTGG
CAAATGTGTGTCGCGAGCACAAAAAGTGGTACTCGGACCACGGATTTTCG
ACAGTCTTCACATACTGGGGTGACAATGGACAGGCACCAAGGTGCTGTGA
TTTTGTTGTCCGGCGGGAAATCCATAGATGGCAAAACGAAGGCCGAAACC
ATGCAATTCAAGTCGGAGGAACGGCGGGGGCATCATCGAATTCATCAGGA
GGAGATGTATCGAGCGCTTACAAAGCAGACGCTTTTGCGATGCCGAAAAA
GACACTATTGCGGAGTGAGCAGCACTGA

Coding sequence (CDS) from alignment at CM002456.1:1145729..1147156+

>rna1082 ID=rna1082|Name=rna1082|organism=Nannochloropsis gaditana|type=CDS|length=2670bp|location=Sequence derived from alignment at CM002456.1:1145729..1147156+ (Nannochloropsis gaditana)
ATGGTCTGCTCCCGGTCTACGCAGGTGATTAGCATAGTGCTAGGAGCATC
TTGTATTTGTTGGTATTCAATCATCACGGGCAGCGGAACGTCAAGAGGTG
AAAATTTCTTGTTCAAAGCTGTAACGATGACAGCAAAAGACCTCTCGGCC
TCCGATGTCACTGACTGCGGAAACGCTAGCGGCATcggaagcagcagcat
cgaTGCTCGAACAGCTAGCGGGATAAATATGACAAATCTGGCTTGTCCAG
CATTTGACGACCGGCCAAGCAGGTTCCCCTCTAACTTTTGGTATGTGAAG
AATCCTAAGACAAGTAGCAGTACCCTCGCAGGCGTATTTCGTAGCGTAGC
CGCGCATCACGCTGTCATCATGCTCAATCCGGCTAAAACACATATGAGCG
TCAAAGAAGTGGAAGATACCAAGCAGAAGGTTATAAGTGCAGTACAAAGT
CGCCACAGTGAGCCACCTCGACTGGGCCTGTCCAATCATGTACGATTTAA
CTCAGGAATTCGTGATACCCTAGAGTTGAACGGGCCTCTCTTGTTATTTA
CCTCAGTGAGGGAGCCAATTGATCGATTTTATTCCTTCTTCATTGAGCAA
TGCCAAAATTCGAAATTCGGAAAAAATGTAGACTGCTTTGGTGAAGCAGT
GGATGAGAAACTCCAAATGGCTACCACAATGGAGCCGAATTCTCAGCTAG
CTGTCATTCGAGGGAACGCAACAGACATCAAGAGTGCAGTAGCTCAGTAC
GACTTCATTTTCGTCCGAGAACGCTTCGACGAGTCTTTGGTAGTGTTCAT
GATATTGTATGGACTGGATTTCGCCGACATCGTCCATTTATCGTCAAAAG
TGCGCACGGGAAAGTATCCCGGCGCCGCCAAGATGCCACCGGCGCTCAAC
AACCTGATACGGACCAATAGCCAGGAAGATGTAAAACTATGGGTCACAGC
AAATGCCCTTTTGGATGAGAAAATTGCGGGCATAAATGAAAAATGTGGAG
GTGAAGCTTACATGGCGTCTACGTTAGCCGCATTTAATCGTCTGCAAGAT
ACTGTGGCAAATGTGTGTCGCGAGCACAAAAAGTGGTACTCGGACCACGG
ATTTTCGACAGTCTTCACATACTGGGGTGACAATGGACAGGCACCAAGGT
GCTGTGATTTTGTTGTCCGGCGGGAAATCCATAGATGGCAAAACGAAGGC
CGAAACCATGCAATTCAAGTCGGAGGAACGGCGGGGGCATCATCGAATTC
ATCAGGAGGAGATGTATCGAGCGCTTACAAAGCAGACGCTTTTGCGATGC
CGAAAAAGACACTATTGCGGAGTGAGCAGCACTGAATGGTCTGCTCCCGG
TCTACGCAGGTGATTAGCATAGTGCTAGGAGCATCTTGTATTTGTTGGTA
TTCAATCATCACGGGCAGCGGAACGTCAAGAGGTGAAAATTTCTTGTTCA
AAGCTGTAACGATGACAGCAAAAGACCTCTCGGCCTCCGATGTCACTGAC
TGCGGAAACGCTAGCGGCATcggaagcagcagcatcgaTGCTCGAACAGC
TAGCGGGATAAATATGACAAATCTGGCTTGTCCAGCATTTGACGACCGGC
CAAGCAGGTTCCCCTCTAACTTTTGGTATGTGAAGAATCCTAAGACAAGT
AGCAGTACCCTCGCAGGCGTATTTCGTAGCGTAGCCGCGCATCACGCTGT
CATCATGCTCAATCCGGCTAAAACACATATGAGCGTCAAAGAAGTGGAAG
ATACCAAGCAGAAGGTTATAAGTGCAGTACAAAGTCGCCACAGTGAGCCA
CCTCGACTGGGCCTGTCCAATCATGTACGATTTAACTCAGGAATTCGTGA
TACCCTAGAGTTGAACGGGCCTCTCTTGTTATTTACCTCAGTGAGGGAGC
CAATTGATCGATTTTATTCCTTCTTCATTGAGCAATGCCAAAATTCGAAA
TTCGGAAAAAATGTAGACTGCTTTGGTGAAGCAGTGGATGAGAAACTCCA
AATGGCTACCACAATGGAGCCGAATTCTCAGCTAGCTGTCATTCGAGGGA
ACGCAACAGACATCAAGAGTGCAGTAGCTCAGTACGACTTCATTTTCGTC
CGAGAACGCTTCGACGAGTCTTTGGTAGTGTTCATGATATTGTATGGACT
GGATTTCGCCGACATCGTCCATTTATCGTCAAAAGTGCGCACGGGAAAGT
ATCCCGGCGCCGCCAAGATGCCACCGGCGCTCAACAACCTGATACGGACC
AATAGCCAGGAAGATGTAAAACTATGGGTCACAGCAAATGCCCTTTTGGA
TGAGAAAATTGCGGGCATAAATGAAAAATGTGGAGGTGAAGCTTACATGG
CGTCTACGTTAGCCGCATTTAATCGTCTGCAAGATACTGTGGCAAATGTG
TGTCGCGAGCACAAAAAGTGGTACTCGGACCACGGATTTTCGACAGTCTT
CACATACTGGGGTGACAATGGACAGGCACCAAGGTGCTGTGATTTTGTTG
TCCGGCGGGAAATCCATAGATGGCAAAACGAAGGCCGAAACCATGCAATT
CAAGTCGGAGGAACGGCGGGGGCATCATCGAATTCATCAGGAGGAGATGT
ATCGAGCGCTTACAAAGCAGACGCTTTTGCGATGCCGAAAAAGACACTAT
TGCGGAGTGAGCAGCACTGA

Synonyms

Publications