EWM29597.1, cds1081 (CDS) Nannochloropsis gaditana

Overview
NameEWM29597.1
Unique Namecds1081
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1145729..1145876 +
Alignment locationCM002456.1:1145970..1147156 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29597.1
ProductSulfotransferase
Orig transcript idgnl|cribi|Naga_100006g84.8686.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1145729..1145876 +
CM002456.1supercontigCM002456.1:1145970..1147156 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008146sulfotransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR005331Sulfotransferase
Homology
BLAST of EWM29597.1 vs. NCBI_GenBank
Match: gi|585112168|gb|EWM29597.1| (Sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 930.628 bits (2404), Expect = 0.000e+0
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0
Query:    1 MVCSRSTQVISIVLGASCICWYSIITGSGTSRGENFLFKAVTMTAKDLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQDTVANVCREHKKWYSDHGFSTVFTYWGDNGQAPRCCDFVVRREIHRWQNEGRNHAIQVGGTAGASSNSSGGDVSSAYKADAFAMPKKTLLRSEQH 444
            MVCSRSTQVISIVLGASCICWYSIITGSGTSRGENFLFKAVTMTAKDLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQDTVANVCREHKKWYSDHGFSTVFTYWGDNGQAPRCCDFVVRREIHRWQNEGRNHAIQVGGTAGASSNSSGGDVSSAYKADAFAMPKKTLLRSEQH
Sbjct:    1 MVCSRSTQVISIVLGASCICWYSIITGSGTSRGENFLFKAVTMTAKDLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQDTVANVCREHKKWYSDHGFSTVFTYWGDNGQAPRCCDFVVRREIHRWQNEGRNHAIQVGGTAGASSNSSGGDVSSAYKADAFAMPKKTLLRSEQH 444          
BLAST of EWM29597.1 vs. NCBI_GenBank
Match: gi|553191227|ref|XP_005855341.1| (hypothetical protein NGA_0093800 [Nannochloropsis gaditana CCMP526] >gi|422293716|gb|EKU21016.1| hypothetical protein NGA_0093800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 345/349 (98.85%), Postives = 347/349 (99.43%), Query Frame = 0
Query:    1 MVCSRSTQVISIVLGASCICWYSIITGSGTSRGENFLFKAVTMTAKDLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQ 349
            MVCSRSTQVISIVLGASCICWYSIITGSGTSRGE FLFKAVTMTAKDLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALN+LIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNR +
Sbjct:    1 MVCSRSTQVISIVLGASCICWYSIITGSGTSRGEIFLFKAVTMTAKDLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNDLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRTK 349          
BLAST of EWM29597.1 vs. NCBI_GenBank
Match: gi|585102714|gb|EWM22256.1| (hypothetical protein Naga_100195g15 [Nannochloropsis gaditana])

HSP 1 Score: 453.366 bits (1165), Expect = 2.827e-153
Identity = 241/469 (51.39%), Postives = 304/469 (64.82%), Query Frame = 0
Query:    2 VCSRSTQVISIVLGASCIC-WYSIITGSGTSRGENFLFKAVTMTAK-----------------------------DLSASDVTDCGNASGIGSSSIDARTASGINMTNLACPAFDDRPSRFPSNFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVKEVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEPNSQLAVIRGNATDIKSAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPGAAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGINEKCGGEAYMASTLAAFNRLQDTVANVCREHKKWYSDHGFSTVFTYWGDNGQAPRCCDFVVRREIHRWQNEGRNHAIQVGGTAGASSNS--SGGDVSSAYKADAFAMPKKTL 438
            V SRS  +I I+L A     WY   + S   +  N LF+A  ++ +                             ++ AS+     + + +G  +IDAR      M+ LAC A+DDRPS+FPSNFWYVK+ KT+SSTLAGVFRSVAAH  V MLN  +  M V++++  KQKVISA+ S   E PRLGL+NH+  N+     L+ +GPLLLFTSVREP+  F+S F+ +C+NS+  KNVDC+G  VD+K+ MATTMEPN QL  IRG+A D++SA AQY  IFVRER +ESLVVFMILYGLDFADIVHLSSKVRT  YP + KMP  LN L+   SQED +L+  ANALLD+KIA IN+ C GEAY AS LA F+RLQ TV   C ++ +WY +HGFSTV TYW DNG APRC DFVVRRE+  WQ E +  AI+V      ++ S  S  + S A + D + MPKK L
Sbjct:   29 VFSRSRVLIGILLAAFGFSSWYFRNSSSMELQSGNILFRAPGISGEYRRNTHPSLHTPSTSENMDRHIVFKSSRNEVVASNSIGSADDADVGIDNIDARQVPMRRMSPLACTAYDDRPSQFPSNFWYVKSHKTASSTLAGVFRSVAAHRGVTMLNAEEVRMDVEQLKSAKQKVISAMNSVFGEVPRLGLANHMPLNTESYALLKSDGPLLLFTSVREPVGYFHSIFLHKCRNSEMKKNVDCYGAVVDKKVAMATTMEPNPQLNYIRGDAVDVESAAAQYGLIFVRERLEESLVVFMILYGLDFADIVHLSSKVRTDMYPDSEKMPVELNELVERKSQEDARLYARANALLDDKIATINKNCKGEAYFASMLAVFSRLQATVVAECEKYNRWYEEHGFSTVLTYWNDNGVAPRCRDFVVRREMRAWQEEDKAIAIRVAVAEALAAESARSSSEGSGASELDGWGMPKKLL 497          
BLAST of EWM29597.1 vs. NCBI_GenBank
Match: gi|612392912|ref|XP_007511976.1| (unknown protein [Bathycoccus prasinos] >gi|424513442|emb|CCO66064.1| unknown protein [Bathycoccus prasinos])

HSP 1 Score: 67.781 bits (164), Expect = 1.423e-8
Identity = 72/261 (27.59%), Postives = 110/261 (42.15%), Query Frame = 0
Query:   95 NFWYVKNPKTSSSTLAGVFRSVAAHHAVIMLNPAKTHMSVK---EVEDTKQKVISAVQSRHSEPPRLGLSNHVRFNSGIRDTLELNGPLLLFTSVREPIDRFYSFFIEQCQNSKFGKNVDCFGEAVDEKLQMATTMEP-NSQLAVIRGNATDIK-------------------SAVAQYDFIFVRERFDESLVVFMILYGLDFADIVHLSSKVRTGKYPG----AAKMPPALNNLIRTNSQEDVKLWVTANALLDEKIAGI 328
            N  +VK  KT S+T+AG+ R +A  H    LN A+T  +     E++D ++  + A              +H  F        +L+ P  L TS+R+P+ RF S F +   ++K   + D      DE L M  T E   S+L       T I                      V  YD + V ERFDES++V   + GL  +D+++L +K     + G    AA +    N L   ++  D  L   AN  L+  I+ I
Sbjct:  149 NILFVKTIKTGSTTIAGLCRRIANRHG---LNGARTGYNQNGSTEIDDKQEPYVYA--------------DHRMFKQTEGTLSKLDHPTFLLTSIRDPVSRFISEF-QYVMDAKESHDKDY--RVPDELLPMPVTNEEWESRLLTFLNMQTSIDHQYDYIGSQKACDNKWSPAGVVNLYDHVVVLERFDESMIVLKNMLGLSNSDLLYLRAKENDYTWGGGGLSAATLAKVKNAL---SASRDYALIDQANQRLNGHISQI 386          
The following BLAST results are available for this feature:
BLAST of EWM29597.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585112168|gb|EWM29597.1|0.000e+0100.00Sulfotransferase [Nannochloropsis gaditana][more]
gi|553191227|ref|XP_005855341.1|0.000e+098.85hypothetical protein NGA_0093800 [Nannochloropsis ... [more]
gi|585102714|gb|EWM22256.1|2.827e-15351.39hypothetical protein Naga_100195g15 [Nannochlorops... [more]
gi|612392912|ref|XP_007511976.1|1.423e-827.59unknown protein [Bathycoccus prasinos] >gi|4245134... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1082rna1082Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications