rna1074, rna1074 (mRNA) Nannochloropsis gaditana

Overview
Namerna1074
Unique Namerna1074
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2061
Alignment locationCM002456.1:1131906..1133687 -

Link to JBrowse

Properties
Property NameValue
Producttrna rrna methyltransferase
Orig transcript idgnl|cribi|Naga_100006g92.8695.mrna
Orig protein idgnl|cribi|Naga_100006g92.8695
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1131906..1133687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g92gene1035Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29606.1cds1073Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1074rna1074-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1074 ID=rna1074|Name=rna1074|organism=Nannochloropsis gaditana|type=mRNA|length=2061bp
ATGGTGACAACATCACTGTGCGCTGAATCTTCCGACTTTCTGCAGCAGCA
GCAATTTCCTGGTCCTACGTCAATAGACACGCAGCAACCGCTTGAGAAGC
ATGTACTATCCGTGACGGAGGTGCACGAGACGACCGGGAGTCCCTCGACA
GAGACCACGGACAACCAACACGGACGGCAAAAATTGCAGCAGGGCATAAG
AACCGAACAAATGCCGCATCAGCCGTACCTTTTACAGCCCTTGCCCGTCC
TTTCCCCTCCACCTTCTGCGGAAGACAAGAACCAGTTTGCGCCCTCCGCT
ATGCCGCCACAGCTTGCGCTATTTTCACAACCCACAAGTTCATTAACGTT
GGCATTGGAGACTGCGGATCCTCCCGTCTTGGAAGGATTTTACAACTATC
CCAAATCCCAGGAAGGCGTCCATCACGAGCCGTGGATTCGGCTGTTCGGT
GCTATCTTGCAGCCTGCCGCTGACGGCTTTGTCGTCACAGATCACACATG
TACGAGGGGCGTCAGCCTCTGGACCTTTACGTTGCGATTGTTGGGGGTCA
AGGCCCTGGGATGGCGGGCATTGGATGAGTCAGCGACCTGGAAGTCGATC
GGGATCCGGGTCACCAAACTGCGCAAGCAGCAAGAGGAGGGGTCCGCCAA
GATCAACATCAACGAATGGATCGGAGAACACATTGTTTGGCGCCGGGAGT
TCCGCACCCGACCCTTCGACATGCGCGTACCTCGTCCACCACCTCCAAGG
ACGACCGAGGAGGCGGCCGCGGAGCTGCCTGGGCCCGTGCGCGTCAAGAG
CACCTTTGCGCTGGGCATCACTCTGCGAGATCCCTCCGACCCGGATGTAC
AACGCGCCTTAGCCAACGCAGTGGACCGGATAGCGCCTGGTGCTGTCCCG
TCTCGCATGGGCCTTGTTTTCGCGGAGTATCGGCGCTTGTGGAACGCCTA
CGAACCCCTATCCCTCCAGCAACGGCAGCATGGCAGGGTGGGACAGACCG
CGGGCAAGAAGCGGAAGAAGATGGATTCGGAGGCGGCGTCGGCGGCCCTT
GAACCTCCTGCTGTGGCTCCTTCGGCGTCGGATGATTCAGCGATGGGAGA
AGGGCAGGAAAAGGGGCAGGTGCAGCTGGTTTTAGAGGGCCAGGGGGAGG
GCCACGACCAGGTTTTCAATAGCGCAGAGAGGGAAGCCAAGGACTACGGC
ATGATGGTAATGCAAGCAGTGGGCGGTGACGAGAGTCACGTGCACATGCT
GAACGGAGGCATGGGGATGGCGGCGATGGAAGGAGGGGAGGGAGGCCGAG
GGGGAGGCATGACGGGCCCGGGGAGTAGCGGGGGAGCCGTCATGCTAGCG
CCCGCGGACACGGCCTCGTTGCCTTACATGGCGCATCAGGAAAACGAAAT
CCAGCCGCCGATTGCCCGCGAGGGACGGGTGGAGTACCCCCGAGTGCATG
GAGGGGCGGCGGGGGTAGGGGGTGGGGGCATGGGTCTTGCGACGGGGCTG
CCGGGTCAGAGGGGGCACGTACAAGGGGAGGATGTACATGGCGAGCGACT
GCCGGTGGAGGTGGGCTCCCTGCACCTGGTCGCGCCCCAGAACCCTCCTT
TTTCTCATGGCGGTGACCATGTCCGTAGGGAGGATCTGAGTCCCTCCGCC
TCGAGAGAGGCGGGGCCCCAGCCTGAGTTTTTCCTACAGCACGGACCGAC
GGACCGACAGGACGTGCACCTGGTGGGAGGAGGGGAGGAATCCGGCGAGT
ACGGGGTCTACCACGTGGAGGGACCCGACGCGGAGGACGGAGGCGGGATG
GCCTCGCTGGCAAGCATGGCCATGGAGGCTGGCGTGCCTGTGGATTTGGA
GCACCACCACCCGCAAGAACATTCCCACCACGCAGGAGTGGTTCACGAGG
CTAGCTTTCGGGAGGAGGGGCTGGTTGAGGACCAGCCACAGGGGGCGCAT
GATCACGAGATGCCCCTCCACCAGGACGCAAACGGGGACGGCGGCGGGGG
GGCTTACCCTGACCAAGAGTCCGCTTCCCTCCCTGATCCGCGCAAGTTGG
TGACTCTTTGA
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protein sequence of rna1074

>rna1074-protein ID=rna1074-protein|Name=rna1074|organism=Nannochloropsis gaditana|type=polypeptide|length=395bp
MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRG
GLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEF
GVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDR
HIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWA
CLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSAS
ACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITE
EMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEK
NLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG
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mRNA from alignment at CM002456.1:1131906..1133687-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1074 ID=rna1074|Name=rna1074|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp|location=Sequence derived from alignment at CM002456.1:1131906..1133687- (Nannochloropsis gaditana)
AGGAATTATGGCACCTTTCCATCAGTTTATGCGCGGATTATACGCTTTTT
TAAACGCTCCGTCTTCAACGGCGATCTTACGGTACGTGTCCCCAGCCTTT
CACCCGTGCCTGCCCTTTTCCCGATCGTGTTATGCACCTCCATGAGACTA
ATGACATCTTAATCAACAGAGAACGTCATGCTGTATGCCTCGGCCGGCTG
GGATGGGCGTTCCTGTCAAGTAGCCTTTGTGGTCAGTGTGCTTATCTTAG
TTCGCGCAAGACTGCCTCAAGCCTACTCCTCATCTCGCCCTGCCAGCTTC
ATCTCTGCCGCATTCAAAAATCGTGGAGGCCTCTTCACGACCAACATAAG
GGTACAAAGGAGCCTACTCTTTCCTCGGACGTCTGTGGCTGTCTGTGACA
CTCGACGTAAAAGAAAGCTCCACTACGATGTACCCAAACCCGATTCGAAT
GACGGAAACTTCGATAATTGGGAGTTCGGGGTCAACGCGGGATGGAGTGG
AGAGAACAACGGTCGCAGTCTTAGAATAAAGCAACATGGTGACGGTTCTA
CTCAAAGTGTCGGTAAAGAAGCTGAAGAAAGGGAGGGTGAAAATCACAAT
ATGGATCACGAGGAGGAGGATGACCGACATATCCGAGACGTGGCTGCTGC
GACAGAGTGCCTATCCAGATTCTGTACTGCTGCTCGTTTAGAGCGTTTGC
GAGATATTGTGAACAAGCGCACCAAATCTGTCCAATTTGTCTTCGAAAAT
GTCGCCAACCCCAACAATCTATGGGCGTGTCTTCGATCTCTGGATGCTTT
CGGAGTTCAGTATGCACACGTCATCCTCGATACTGCTCACTACCGCAAAC
CGCACCGCCTCGCTCAAGCAAAGAGCGCTATGGGCTCACAAAAATGGTTG
ACCGTCAGGGAGCACCCGAGCGCGTCAGCTTGCGTGGCCGCATTGAAGAG
AGAGGGATATTACGTCTTGGCGAGCGACTTGAAGCCGGGCACGTCCCCGA
AACCAGTGCAGGAGGTGAATTGGGCGGCTCAGAAGGTGGCGATTGTGATG
GGGAACGAAGAAAGGGGCATCACGGAGGAAATGCGCTCCTTATGTGACGG
GACGTTCCAGATTCCGATGATGGGCTTCGCGGAAAGCTTCAATTTATCCG
GGAGTACTGCAGTGACGTTGGCTTTCGTGAGCTCCATGGGAGGTCTGAAG
CACGGAGACCTGCCGACAGCCGAGAAGAACCTGTTGTTGCTACGGTGGCT
GCTGAGATCGGTGCCGCAAGGGCCGGCGATCTTGAGGCGGGAGGGTTTGC
TGATTGAGGACGAGCGTTTCTTGCCGACATCTAAGGCAGTGCTTGGTTAC
AGCCTAGGGGGGTAAGCGTCGCAGGCAATGCCAGGCCGAAACTGAAACAG
TTTGAACCCGAGACATACGGGAAATGTGAATAATTGCCTAGGACGGGAAA
GCCAAAAGAAAGACATACGAAACGTAGAAAATCGAACGAGAAATCTGGAA
GCTCCGAACTTCACATTTGTGACCTTTTCCGCCATGAGACGACTAGGCAG
TCGTCAGCGGGGTCAATTTCTGCCCGTCAATACAGGACAAATGAGTCAAA
AGAGTGTTAATGTCTTCGTACGTATCCATCAAATATCGACAATCGTGGGC
CGCCATCATCCAAGAACATAACTCGACGCCGCGATAGACACGTGTGTTGC
ACCCTCTCGGGGAGAAGCTTTTACATTCAAAGAGTCACCAACTTGCGCGG
ATCAGGGAGGGAAGCGGACTCTTGGTCAGGGT
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Coding sequence (CDS) from alignment at CM002456.1:1131906..1133687-

>rna1074 ID=rna1074|Name=rna1074|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at CM002456.1:1131906..1133687- (Nannochloropsis gaditana)
ATGCTGTATGCCTCGGCCGGCTGGGATGGGCGTTCCTGTCAAGTAGCCTT
TGTGGTCAGTGTGCTTATCTTAGTTCGCGCAAGACTGCCTCAAGCCTACT
CCTCATCTCGCCCTGCCAGCTTCATCTCTGCCGCATTCAAAAATCGTGGA
GGCCTCTTCACGACCAACATAAGGGTACAAAGGAGCCTACTCTTTCCTCG
GACGTCTGTGGCTGTCTGTGACACTCGACGTAAAAGAAAGCTCCACTACG
ATGTACCCAAACCCGATTCGAATGACGGAAACTTCGATAATTGGGAGTTC
GGGGTCAACGCGGGATGGAGTGGAGAGAACAACGGTCGCAGTCTTAGAAT
AAAGCAACATGGTGACGGTTCTACTCAAAGTGTCGGTAAAGAAGCTGAAG
AAAGGGAGGGTGAAAATCACAATATGGATCACGAGGAGGAGGATGACCGA
CATATCCGAGACGTGGCTGCTGCGACAGAGTGCCTATCCAGATTCTGTAC
TGCTGCTCGTTTAGAGCGTTTGCGAGATATTGTGAACAAGCGCACCAAAT
CTGTCCAATTTGTCTTCGAAAATGTCGCCAACCCCAACAATCTATGGGCG
TGTCTTCGATCTCTGGATGCTTTCGGAGTTCAGTATGCACACGTCATCCT
CGATACTGCTCACTACCGCAAACCGCACCGCCTCGCTCAAGCAAAGAGCG
CTATGGGCTCACAAAAATGGTTGACCGTCAGGGAGCACCCGAGCGCGTCA
GCTTGCGTGGCCGCATTGAAGAGAGAGGGATATTACGTCTTGGCGAGCGA
CTTGAAGCCGGGCACGTCCCCGAAACCAGTGCAGGAGGTGAATTGGGCGG
CTCAGAAGGTGGCGATTGTGATGGGGAACGAAGAAAGGGGCATCACGGAG
GAAATGCGCTCCTTATGTGACGGGACGTTCCAGATTCCGATGATGGGCTT
CGCGGAAAGCTTCAATTTATCCGGGAGTACTGCAGTGACGTTGGCTTTCG
TGAGCTCCATGGGAGGTCTGAAGCACGGAGACCTGCCGACAGCCGAGAAG
AACCTGTTGTTGCTACGGTGGCTGCTGAGATCGGTGCCGCAAGGGCCGGC
GATCTTGAGGCGGGAGGGTTTGCTGATTGAGGACGAGCGTTTCTTGCCGA
CATCTAAGGCAGTGCTTGGTTACAGCCTAGGGGGGTAA
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Synonyms
Publications