EWM29606.1, cds1073 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|585112177|gb|EWM29606.1| (trna rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0 Query: 1 MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRGGLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395 MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRGGLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG Sbjct: 1 MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRGGLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|553191238|ref|XP_005855344.1| (trna rrna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422293719|gb|EKU21019.1| trna rrna methyltransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 524.242 bits (1349), Expect = 0.000e+0 Identity = 252/254 (99.21%), Postives = 253/254 (99.61%), Query Frame = 0 Query: 142 MDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395 MDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDE FLPTSKAVLGY+LGG Sbjct: 1 MDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDEGFLPTSKAVLGYNLGG 254
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|298714780|emb|CBJ25679.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 224.557 bits (571), Expect = 1.580e-66 Identity = 108/233 (46.35%), Postives = 154/233 (66.09%), Query Frame = 0 Query: 149 DRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERF 381 D+ D+ A + L + + RL R+ D++++RT+S VFEN ANPNN+WACLR+LD+FG+Q+AH++ D + Y K RL +AMGSQKWLT+ H VA LK +GY V+ASDL P S P+ E++W+ A+V+GNEERGI++ MR + D TF IPM GF SFN+S + ++ LA +S++ LKHGDLP E+ + + WL++ V IL+REG+ I E F Sbjct: 118 DQTASDLERAVDLLKGYLSEDRLSRMEDVLDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSP--SAVPISEIDWSV-PTAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDLPEDERREVAVTWLMQCVRGSEHILKREGIDIPQEIF 347
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|873233534|emb|CEM03191.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 196.823 bits (499), Expect = 3.502e-56 Identity = 102/224 (45.54%), Postives = 140/224 (62.50%), Query Frame = 0 Query: 154 DVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRL-AQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLI 376 D +A E LS + RLERL+ ++++RT QFVFE NPNN+WACLR+LD+FG+Q+ VI Y + + A+GS +WL+++E SAS + LK G V ASDL+ ++ +V +Q IV+GNE GI+EEMR L D TF +PM GFAESFNLS + AVT A++S MGGLK GDL E+ ++ WL+R VP +L R+GL + Sbjct: 87 DYESAVEALSPLVSPDRLERLQTVISQRTNHCQFVFEAPTNPNNVWACLRTLDSFGIQHTSVIRRPGGYDRQRDINGNMNVALGSSQWLSMQEFQSASEAIGQLKDRGVRVYASDLQEDSTALTSLDV---SQPFTIVLGNERTGISEEMRGLADETFFVPMRGFAESFNLSVACAVTCAYLSQMGGLKWGDLSEGERAAVMTEWLMRCVPGSQQVLERKGLRV 307
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|1072222734|gb|OEU07493.1| (SpoU_methylase-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 176.407 bits (446), Expect = 2.322e-49 Identity = 94/236 (39.83%), Postives = 147/236 (62.29%), Query Frame = 0 Query: 155 VAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAK----SAMGSQKWLTVREHPSASACVAALKR-EGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFV------SSMGGLKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGLLI 376 V+ AT L + R +R+ ++ RT++V+F++EN ANP+N+WACLR++D+FG+Q +I+D+ Y + + K +AMGS +WLT+ +PS + ++ +GY + ASDL P + N + + IVMGNE+RGI++EMR L D TF +PM GFAESFNLS +T++ LA + SS G L+ GDL E N L L+ LL+S+P+ G A+L++ +++ Sbjct: 8 VSKATSILEPWINEKRQQRITTVLKHRTRNVKFLYENPANPSNVWACLRTIDSFGIQNVDLIIDSGMYGEGKQTLMQKRGMRTAMGSAQWLTLTNYPSTKEAIQHIREVQGYKIYASDLNPNSIDI---HQNQDQRPICIVMGNEDRGISDEMRLLADETFTLPMYGFAESFNLSVATSIILAHMSSKSVESSTGPLRPGDLNEHEYNCLYLKGLLKSLPKKRLGIALLKKNDIIL 240
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|224014732|ref|XP_002297028.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 176.407 bits (446), Expect = 2.246e-46 Identity = 98/263 (37.26%), Postives = 155/263 (58.94%), Query Frame = 0 Query: 155 VAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAK---SAMGSQKWLTVREHPSASACVAALKRE-GYYVLASDLKPGTSPKPVQEVNWAA----------------QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGG------------------LKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGLLI 376 V + + L+ + RLER+ +++N+RT+ +F+FEN +NP+N+WACLR+LD+FG+QY VI+ + Y+ + Q + +AMGS W+T+R+ S A + +L+ E + ASDL P + V+++NW + + IVMGNEERGI+++MR L D TF +PM GFAESFNLS +TA+TLA++S++ G L+ GDL E L L+ + S+ Q G A+L++EG+++ Sbjct: 275 VQQSIDILTPYVQPRRLERIDEVLNQRTRHTRFLFENPSNPSNVWACLRTLDSFGIQYVDVIIHSDSYQGKAAVNQKRGMRTAMGSACWMTLRQFGSIEAAITSLREEEDCLIYASDLNPAS--MDVRDLNWDVDYSSGGNADSDQQKEQRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATAITLAYMSAVSGRGGADEDSNEGGSGTKGPLRPGDLDPHELQCLRLKGAINSLAQKRMGKALLKKEGIVL 535
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|1210530090|dbj|GAX11272.1| (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris]) HSP 1 Score: 159.458 bits (402), Expect = 6.117e-42 Identity = 95/236 (40.25%), Postives = 145/236 (61.44%), Query Frame = 0 Query: 152 IRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQ---AKSAMGSQKWLTVREHPSASACVAALKREGYY------VLASDLKPGTSPKPVQEVNWAA-QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGL 374 + V + L + AR+ER++ ++ KRT++V+F+FEN ANP+N++ACLR+LD+FG+QYA V L + Y+ L+Q K+AMGS +W+T++++ E Y + AS L P K ++E+ W + Q + IVMGNEERGIT EMR D F +PM+GFAESFNLS +TA+ A +S+ L +L ++ LLLL+ L+ S+PQ A+L++ G+ Sbjct: 81 LTQVQNSIATLLPYVRPARVERIQSVLAKRTQNVRFLFENPANPSNVFACLRTLDSFGIQYADVFLQPSLYQGTMALSQKKGVKTAMGSAQWMTLQQYIIQQDATLTSTLEKYKQQHNCRIYASCLSPDA--KDIREIVWPSDQTICIVMGNEERGITTEMRHAADELFTLPMVGFAESFNLSVATAIACAHLSTQPNLLRPNLSEHQQQLLLLQGLIHSIPQKRMSKALLKQAGI 314
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|1210511797|dbj|GAX29037.1| (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris]) HSP 1 Score: 150.599 bits (379), Expect = 2.610e-38 Identity = 92/237 (38.82%), Postives = 151/237 (63.71%), Query Frame = 0 Query: 151 HIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQ---AKSAMGSQKWLTVREH-----PSASACVAALKRE-GYYVLASDLKPGTSPKPVQEVNWAA-QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGL 374 ++D AA L + +R+ER++ ++ KRT++V+F+FEN ANP+N++ACLR+LD+FG+Q A V L + Y+ L+Q K+AMGS +W+T++++ + ++ + K++ + AS L P K ++++ W + + IVMGNEERGIT EM+ D F +PM+GFAESFNLS +TA+T A +S+ L +L ++ LLLL+ L+ S+PQ A+L++ G+ Sbjct: 111 QVKDSIAA---LLPYVRPSRVERIQSVLEKRTQNVRFLFENPANPSNVFACLRTLDSFGIQDADVFLQPSLYQGTMALSQKKGVKTAMGSAQWMTLQQYIIQQDATLTSTLQKYKQQHNCRIYASCLSPDA--KDIRDIEWPTNESICIVMGNEERGITTEMKDAADELFTLPMVGFAESFNLSVATAITCAHLSTQPDLLRPNLSQDQQELLLLQGLIHSIPQKRMSKALLKQAGI 342
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|676390075|ref|XP_009038316.1| (hypothetical protein AURANDRAFT_14487, partial [Aureococcus anophagefferens] >gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487, partial [Aureococcus anophagefferens]) HSP 1 Score: 144.05 bits (362), Expect = 5.215e-38 Identity = 75/173 (43.35%), Postives = 103/173 (59.54%), Query Frame = 0 Query: 162 LSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFV 334 L+ + + R + +RT ++ FE +NP N WACLR++DAFGVQ V+ DT R +AMG+QKWLT+REH + V AL GY V A+DL PG+ +P+ +V+WAA+ A+V GNEE GI+E++R+ D +PM G AES NLS S LA V Sbjct: 1 LAPYVSPERKAAFVKVAGQRTAHLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDTLEARM-------HAAMGAQKWLTLREHDAPGDLVDALHAAGYKVAATDLGPGS--RPIGDVDWAAEPYALVFGNEETGISEDLRARADVRVHLPMRGLAESLNLSVSVGACLAHV 164
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|397575701|gb|EJK49840.1| (hypothetical protein THAOC_31244 [Thalassiosira oceanica]) HSP 1 Score: 154.066 bits (388), Expect = 5.380e-38 Identity = 85/212 (40.09%), Postives = 129/212 (60.85%), Query Frame = 0 Query: 155 VAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQA---KSAMGSQKWLTVREHPSASACVAALK-REGYYVLASDLKPGTSPKPVQEVNWAA--------------------------QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSS 336 V+ + L+ + RLER+ +++++RT +F+FEN +NP+N+WACLR+LD+FGVQ+A V++D Y + Q ++AMGS W+TVR+ SA + ++ EG V ASDL G+ V++++W + V IVMGNE+RGI++ MRS D TF++PM+GFAESFNLS +TAVTLA++S+ Sbjct: 76 VSRSIAALAPYVRPRRLERIDEVLSRRTGRARFLFENPSNPSNVWACLRTLDSFGVQHADVVVDPDAYDGKAAVMQKRGMRTAMGSAVWMTVRQFGSADEALRVIRDEEGCAVYASDLGEGS--VDVRDLSWDGRDCPERCPDAPAGGGGRDAGDGVAEYRPVCIVMGNEDRGISDGMRSAADATFRLPMVGFAESFNLSVATAVTLAYMSA 285 The following BLAST results are available for this feature:
BLAST of EWM29606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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