EWM29606.1, cds1073 (CDS) Nannochloropsis gaditana

Overview
NameEWM29606.1
Unique Namecds1073
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1132323..1133510 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29606.1
Producttrna rrna methyltransferase
Orig transcript idgnl|cribi|Naga_100006g92.8695.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1132323..1133510 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR001537SpoU_MeTrfase
IPR029026tRNA_m1G_MTases_N
Homology
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|585112177|gb|EWM29606.1| (trna rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 821.617 bits (2121), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query:    1 MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRGGLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395
            MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRGGLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG
Sbjct:    1 MLYASAGWDGRSCQVAFVVSVLILVRARLPQAYSSSRPASFISAAFKNRGGLFTTNIRVQRSLLFPRTSVAVCDTRRKRKLHYDVPKPDSNDGNFDNWEFGVNAGWSGENNGRSLRIKQHGDGSTQSVGKEAEEREGENHNMDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|553191238|ref|XP_005855344.1| (trna rrna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422293719|gb|EKU21019.1| trna rrna methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 524.242 bits (1349), Expect = 0.000e+0
Identity = 252/254 (99.21%), Postives = 253/254 (99.61%), Query Frame = 0
Query:  142 MDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSLGG 395
            MDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDE FLPTSKAVLGY+LGG
Sbjct:    1 MDHEEEDDRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDEGFLPTSKAVLGYNLGG 254          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|298714780|emb|CBJ25679.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 224.557 bits (571), Expect = 1.580e-66
Identity = 108/233 (46.35%), Postives = 154/233 (66.09%), Query Frame = 0
Query:  149 DRHIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERF 381
            D+   D+  A + L  + +  RL R+ D++++RT+S   VFEN ANPNN+WACLR+LD+FG+Q+AH++ D + Y K  RL    +AMGSQKWLT+  H      VA LK +GY V+ASDL P  S  P+ E++W+    A+V+GNEERGI++ MR + D TF IPM GF  SFN+S + ++ LA +S++  LKHGDLP  E+  + + WL++ V     IL+REG+ I  E F
Sbjct:  118 DQTASDLERAVDLLKGYLSEDRLSRMEDVLDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSP--SAVPISEIDWSV-PTAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDLPEDERREVAVTWLMQCVRGSEHILKREGIDIPQEIF 347          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|873233534|emb|CEM03191.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 196.823 bits (499), Expect = 3.502e-56
Identity = 102/224 (45.54%), Postives = 140/224 (62.50%), Query Frame = 0
Query:  154 DVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRL-AQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLI 376
            D  +A E LS   +  RLERL+ ++++RT   QFVFE   NPNN+WACLR+LD+FG+Q+  VI     Y +   +      A+GS +WL+++E  SAS  +  LK  G  V ASDL+  ++     +V   +Q   IV+GNE  GI+EEMR L D TF +PM GFAESFNLS + AVT A++S MGGLK GDL   E+  ++  WL+R VP    +L R+GL +
Sbjct:   87 DYESAVEALSPLVSPDRLERLQTVISQRTNHCQFVFEAPTNPNNVWACLRTLDSFGIQHTSVIRRPGGYDRQRDINGNMNVALGSSQWLSMQEFQSASEAIGQLKDRGVRVYASDLQEDSTALTSLDV---SQPFTIVLGNERTGISEEMRGLADETFFVPMRGFAESFNLSVACAVTCAYLSQMGGLKWGDLSEGERAAVMTEWLMRCVPGSQQVLERKGLRV 307          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|1072222734|gb|OEU07493.1| (SpoU_methylase-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 176.407 bits (446), Expect = 2.322e-49
Identity = 94/236 (39.83%), Postives = 147/236 (62.29%), Query Frame = 0
Query:  155 VAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAK----SAMGSQKWLTVREHPSASACVAALKR-EGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFV------SSMGGLKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGLLI 376
            V+ AT  L  +    R +R+  ++  RT++V+F++EN ANP+N+WACLR++D+FG+Q   +I+D+  Y +  +    K    +AMGS +WLT+  +PS    +  ++  +GY + ASDL P +        N   + + IVMGNE+RGI++EMR L D TF +PM GFAESFNLS +T++ LA +      SS G L+ GDL   E N L L+ LL+S+P+   G A+L++  +++
Sbjct:    8 VSKATSILEPWINEKRQQRITTVLKHRTRNVKFLYENPANPSNVWACLRTIDSFGIQNVDLIIDSGMYGEGKQTLMQKRGMRTAMGSAQWLTLTNYPSTKEAIQHIREVQGYKIYASDLNPNSIDI---HQNQDQRPICIVMGNEDRGISDEMRLLADETFTLPMYGFAESFNLSVATSIILAHMSSKSVESSTGPLRPGDLNEHEYNCLYLKGLLKSLPKKRLGIALLKKNDIIL 240          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|224014732|ref|XP_002297028.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 176.407 bits (446), Expect = 2.246e-46
Identity = 98/263 (37.26%), Postives = 155/263 (58.94%), Query Frame = 0
Query:  155 VAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAK---SAMGSQKWLTVREHPSASACVAALKRE-GYYVLASDLKPGTSPKPVQEVNWAA----------------QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGG------------------LKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGLLI 376
            V  + + L+ +    RLER+ +++N+RT+  +F+FEN +NP+N+WACLR+LD+FG+QY  VI+ +  Y+    + Q +   +AMGS  W+T+R+  S  A + +L+ E    + ASDL P +    V+++NW                  + + IVMGNEERGI+++MR L D TF +PM GFAESFNLS +TA+TLA++S++ G                  L+ GDL   E   L L+  + S+ Q   G A+L++EG+++
Sbjct:  275 VQQSIDILTPYVQPRRLERIDEVLNQRTRHTRFLFENPSNPSNVWACLRTLDSFGIQYVDVIIHSDSYQGKAAVNQKRGMRTAMGSACWMTLRQFGSIEAAITSLREEEDCLIYASDLNPAS--MDVRDLNWDVDYSSGGNADSDQQKEQRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATAITLAYMSAVSGRGGADEDSNEGGSGTKGPLRPGDLDPHELQCLRLKGAINSLAQKRMGKALLKKEGIVL 535          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|1210530090|dbj|GAX11272.1| (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris])

HSP 1 Score: 159.458 bits (402), Expect = 6.117e-42
Identity = 95/236 (40.25%), Postives = 145/236 (61.44%), Query Frame = 0
Query:  152 IRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQ---AKSAMGSQKWLTVREHPSASACVAALKREGYY------VLASDLKPGTSPKPVQEVNWAA-QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGL 374
            +  V  +   L  +   AR+ER++ ++ KRT++V+F+FEN ANP+N++ACLR+LD+FG+QYA V L  + Y+    L+Q    K+AMGS +W+T++++            E Y       + AS L P    K ++E+ W + Q + IVMGNEERGIT EMR   D  F +PM+GFAESFNLS +TA+  A +S+   L   +L   ++ LLLL+ L+ S+PQ     A+L++ G+
Sbjct:   81 LTQVQNSIATLLPYVRPARVERIQSVLAKRTQNVRFLFENPANPSNVFACLRTLDSFGIQYADVFLQPSLYQGTMALSQKKGVKTAMGSAQWMTLQQYIIQQDATLTSTLEKYKQQHNCRIYASCLSPDA--KDIREIVWPSDQTICIVMGNEERGITTEMRHAADELFTLPMVGFAESFNLSVATAIACAHLSTQPNLLRPNLSEHQQQLLLLQGLIHSIPQKRMSKALLKQAGI 314          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|1210511797|dbj|GAX29037.1| (tRNA (guanosine-2'-O-)-methyltransferase [Fistulifera solaris])

HSP 1 Score: 150.599 bits (379), Expect = 2.610e-38
Identity = 92/237 (38.82%), Postives = 151/237 (63.71%), Query Frame = 0
Query:  151 HIRDVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQ---AKSAMGSQKWLTVREH-----PSASACVAALKRE-GYYVLASDLKPGTSPKPVQEVNWAA-QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQ---GPAILRREGL 374
             ++D  AA   L  +   +R+ER++ ++ KRT++V+F+FEN ANP+N++ACLR+LD+FG+Q A V L  + Y+    L+Q    K+AMGS +W+T++++      + ++ +   K++    + AS L P    K ++++ W   + + IVMGNEERGIT EM+   D  F +PM+GFAESFNLS +TA+T A +S+   L   +L   ++ LLLL+ L+ S+PQ     A+L++ G+
Sbjct:  111 QVKDSIAA---LLPYVRPSRVERIQSVLEKRTQNVRFLFENPANPSNVFACLRTLDSFGIQDADVFLQPSLYQGTMALSQKKGVKTAMGSAQWMTLQQYIIQQDATLTSTLQKYKQQHNCRIYASCLSPDA--KDIRDIEWPTNESICIVMGNEERGITTEMKDAADELFTLPMVGFAESFNLSVATAITCAHLSTQPDLLRPNLSQDQQELLLLQGLIHSIPQKRMSKALLKQAGI 342          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|676390075|ref|XP_009038316.1| (hypothetical protein AURANDRAFT_14487, partial [Aureococcus anophagefferens] >gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487, partial [Aureococcus anophagefferens])

HSP 1 Score: 144.05 bits (362), Expect = 5.215e-38
Identity = 75/173 (43.35%), Postives = 103/173 (59.54%), Query Frame = 0
Query:  162 LSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFV 334
            L+ + +  R      +  +RT  ++  FE  +NP N WACLR++DAFGVQ   V+ DT   R         +AMG+QKWLT+REH +    V AL   GY V A+DL PG+  +P+ +V+WAA+  A+V GNEE GI+E++R+  D    +PM G AES NLS S    LA V
Sbjct:    1 LAPYVSPERKAAFVKVAGQRTAHLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDTLEARM-------HAAMGAQKWLTLREHDAPGDLVDALHAAGYKVAATDLGPGS--RPIGDVDWAAEPYALVFGNEETGISEDLRARADVRVHLPMRGLAESLNLSVSVGACLAHV 164          
BLAST of EWM29606.1 vs. NCBI_GenBank
Match: gi|397575701|gb|EJK49840.1| (hypothetical protein THAOC_31244 [Thalassiosira oceanica])

HSP 1 Score: 154.066 bits (388), Expect = 5.380e-38
Identity = 85/212 (40.09%), Postives = 129/212 (60.85%), Query Frame = 0
Query:  155 VAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQA---KSAMGSQKWLTVREHPSASACVAALK-REGYYVLASDLKPGTSPKPVQEVNWAA--------------------------QKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSS 336
            V+ +   L+ +    RLER+ +++++RT   +F+FEN +NP+N+WACLR+LD+FGVQ+A V++D   Y     + Q    ++AMGS  W+TVR+  SA   +  ++  EG  V ASDL  G+    V++++W                            + V IVMGNE+RGI++ MRS  D TF++PM+GFAESFNLS +TAVTLA++S+
Sbjct:   76 VSRSIAALAPYVRPRRLERIDEVLSRRTGRARFLFENPSNPSNVWACLRTLDSFGVQHADVVVDPDAYDGKAAVMQKRGMRTAMGSAVWMTVRQFGSADEALRVIRDEEGCAVYASDLGEGS--VDVRDLSWDGRDCPERCPDAPAGGGGRDAGDGVAEYRPVCIVMGNEDRGISDGMRSAADATFRLPMVGFAESFNLSVATAVTLAYMSA 285          
The following BLAST results are available for this feature:
BLAST of EWM29606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM29606.1XP_005855344.1CBJ25679.1CEM03191.1OEU07493.1XP_002297028.1GAX11272.1GAX29037.1XP_009038316.1EJK49840.1
Match NameE-valueIdentityDescription
gi|585112177|gb|EWM29606.1|0.000e+0100.00trna rrna methyltransferase [Nannochloropsis gadit... [more]
gi|553191238|ref|XP_005855344.1|0.000e+099.21trna rrna methyltransferase [Nannochloropsis gadit... [more]
gi|298714780|emb|CBJ25679.1|1.580e-6646.35conserved unknown protein [Ectocarpus siliculosus][more]
gi|873233534|emb|CEM03191.1|3.502e-5645.54unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072222734|gb|OEU07493.1|2.322e-4939.83SpoU_methylase-domain-containing protein [Fragilar... [more]
gi|224014732|ref|XP_002297028.1|2.246e-4637.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210530090|dbj|GAX11272.1|6.117e-4240.25tRNA (guanosine-2'-O-)-methyltransferase [Fistulif... [more]
gi|1210511797|dbj|GAX29037.1|2.610e-3838.82tRNA (guanosine-2'-O-)-methyltransferase [Fistulif... [more]
gi|676390075|ref|XP_009038316.1|5.215e-3843.35hypothetical protein AURANDRAFT_14487, partial [Au... [more]
gi|397575701|gb|EJK49840.1|5.380e-3840.09hypothetical protein THAOC_31244 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1074rna1074Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications