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Properties
| Property Name | Value |
|---|
| Product | mate efflux family protein |
| Orig transcript id | gnl|cribi|Naga_100006g98.8665.mrna |
| Orig protein id | gnl|cribi|Naga_100006g98.8665 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1118677..1121437 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1070 ID=rna1070|Name=rna1070|organism=Nannochloropsis gaditana|type=mRNA|length=2214bp
ATGGGCCGCGGGGCAATTTTGGCGGATGACATGGGCTTGGGCAAGACGCT
ACAAACCATCGCCCTCCTATGGGCCCTGACCAGACAGTCCCCTTTCCAGC
ACCGGTACGCCGACGTGGAAAAAGCCGTGGTCGTCTGTCCGTCCTCTCTC
TTGAACCAGTGGGCCGCTGAACTCAAGAAGTGGCTACAGGTCCGGCTCTC
CTTCATGGTCGTCGACTCCGCCATGGGGAAAGCACTCGGGAAAGGGGATG
CCAAGGAGCAGGTCAACACCTTCTGTACTTCCTCGGGGCAGCATTCCACC
GTCCTTTTTATCTCCTACGAGGGGTACCGCATCCACGCGGCGGCTTTGAA
CGCTTGCCAACAGATCGGTCTCTTGATCTGCGACGAGGCACATCGGCTCA
AGGAGGGGGCCAGCAAAACTCTGGTCGCCTTGGCCGCCTCCCCGGCACAA
GCGAGATTGGCCCTGACGGGTACTCCTGTTCAAAACGACTTGGAGGAATT
TTACTCGCTGGTTGATTTCGTCAATCCCGGCGTCCTTGGCCCTCTATCCA
GCTTCCGATCCAACTATATCTCTCCTATCCTTCGCGCCCGCGATCCCAAA
GCCTCTTCTGTGACAAAGCAATGCGGCGAGCAACGTACTCGTGAGGTCAT
GGCCCTGGTCTCTCGCTTCTTTCTCCGACGCACCGCCGCTGCTGTCCTCA
AGACCCTTATTCCTCCCAAGACGAGCCTCGTCGTTTTCTGCCGACTGGCC
CCGGTGCAGCGAAAACTCTATCAGGAGGTGGTGAGGATTGGGCTCATGCC
GGGTGTCATGGGACACGAACCGGCAGTGGCCTCTGCCTTGGGCTTGAAGA
TGATTGATGCACTGCGCAAAATATGCAACCATCCATGTTTTTTTTCAACG
GAAGTGTCCCCTGAAAGAAGTGAGGACATCGGGCGCGAAGGGGAAGGAAG
AGGAGGTTTAAGCGAATCGGCAATAATTAAAATTTTGCGGACGACGAGGT
CTAATTCTGCGGCGGATTTAGATGAGGACAAGAAAGGCGGCAGCAAGTCG
GGAAAGATGGGCGGGGGAAAGAAGTCTGCGGGGGGGCAAACGAGAACGAG
CTTGCGTTGTCCGATTGGCATGTCAGGAAAATTGGCGGTGACAGAGGAGC
TCCTGGAAGCTATTTACGCGCAAACAGCTGACCGCGTGGTGGTCTGCTCT
TCCTACACACTTTCCTTGGACATGCTTCAGGACCTATGCCAGGCGCGAGG
ATGGCACGTCCTCCGCCTGGACGGCTCAGTCTCAATCTCTCAGCGACATG
GGCTTGTGGAAGCTTTCAATAGGGGCGCCGGTTGCCCGGCGCGGGAGAAG
GAGGATCCATTCGTGTTTCTACTGAGCACGCGCGCTGGTGGCCAGGGGCT
GAACCTAGTTGGCGGCAATCGTCTCATCCTCTTCGACTCTTGCTTCAACC
CCTCCGCGGATCTGCAAGCGCAAGCACGAGTCTGGCGCGACGGTCAGAGG
AAACCTTGCGTGCTTTACCGTCTCCTGAGTGCGGGTACCATGGAGGAGAA
AGTCTTTCAACGCCAAATTTCCAAACGGGAACTGCATTCCACGCTAGTCG
AGAACACGGCGCACGAGACTCGGAATTTCTCGCCGGACGAACTGAGAAAA
TTGTTTGTCTTGGCGGGACCCCATGTCCGGTGCGAGACCTACGATTTGCT
TCGAAGTGGTGGAGGACGGGCGGAAGGAAAGCGAGAATGGAAGGATTACA
CAGGCCCCAAGGACATCCCGGACGCATGTTTGCGGTCGGTGGTGGAGGCG
CAAGGGACGGGAGGGAGCATGGTGAATTTCGTACACGAGGAGGAAGACGG
GAGAGGAGAGGAGGAGGACAAGGAAAAAAAGCGTGGAGATGACGAGGGCG
ACGGGGACATGGGGCTCGATTCTAGGCTCGTGCATGAAGAAGATGCTGTG
GAGGACGAGGAAGTGAGCGGGTTCGGAGGCTCTGTCGCTGTAGCAGGGAG
TGATGAGGCTGCCATACGCAAGCGAAAGAGGATCGTGGTATCGTGTGAGA
CGGAAAGTGATGATGAGTTTGAGAGTATCGACGGGAGAAGCGGTGAGAAG
GATAGTGGAAGAGGAGCTGCTATGGGACCGACAAGCGAAGGTGGCAGCAG
AGATGCGGAGGAGGGATATGACATGGAGGAGGAAGAAGAGTGGGAGACAC
TTATGAACTCGTAG back to topprotein sequence of rna1070 >rna1070-protein ID=rna1070-protein|Name=rna1070|organism=Nannochloropsis gaditana|type=polypeptide|length=676bp
MGSTLGTGSLANFDFLAALEFSAIHELSSSSLALVTTRLCRAGRGLCRRM
NLHINRRSYADTRMYRLHILLQLTLLVVVTAAFTSLSGGSLSTCRRGPST
GCSTPRTLDVERGGIRRVGVTSGRISGHSLALQRKYLCSTMPLTPLSASS
GGTSEPSHNMHQAPSAVTPVPAAVHAAHSHIGEEGGHQGGILRSLKENWA
RLTRVQEYDGQIWELALPTLGAVLIDPCLSLVDTMFVGKLGHVALASMGP
CTALYNMIFATASCMFSVSTAVLIARYKALGDGQATGRTLFTAITSSVAL
GIFFTVLMASRPSQALRLMGASSPEMIRLGAPYLLWRATALPANMFLLVA
GGAFRGIGNARENFTNGLVVGLVNLVLDPVLMFSCNLGVAGAAMATAIAQ
WIGALSYIFKMTRRKEAFGLNLGWKIIPGMADVQEFLTAGTAMLFRSLCN
VGAWTLMASIATRMGVVEIAAHQLILSMWLVIAFVQDAVGAAGQVLVSQQ
LGNPGSSRHAIRRGKARARAIAKRVISFSAIIGVALSLIGQIVLPSLIPL
FCSSPEVIALTSSVLPIVLLGFPVCCVVWTWDSVYYGASDFKYNAKVIAV
SSSIAVSLTLASLHYEWGLLGLWSSMVFVYFGLRVVAHYRRFNSEHGPFG
KSTLSLNERDDGAGQTLMSDAVPQIS back to topmRNA from alignment at CM002456.1:1118677..1121437+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1070 ID=rna1070|Name=rna1070|organism=Nannochloropsis gaditana|type=mRNA|length=2761bp|location=Sequence derived from alignment at CM002456.1:1118677..1121437+ (Nannochloropsis gaditana)
ATGGGAAGTACATTAGGCACAGGATCCTTGGCAAATTTTGATTTTCTTGC
CGCTCTCGAATTCTCAGCCATCCACGAgctttcgtcgtcctcccttgctt
tAGTGACAACACGTTTGTGTAGAGCGGGGCGCGGTCTTTGTCGACGGATG
AACCTACACATCAACAGACGCAGCTATGCAGATACACGGATGTATCGTCT
TCACATTCTTCTACAATTAACGTTGCTTGTGGTAGTCACGGCGGCGTTTA
CCAGCTTGTCCGGAGGATCGCTTTCGACTTGCAGGCGCGGTCCAAGCACC
GGCTGTAGCACACCTCGCACCCTAGATGTTGAAAGGGGCGGCATCCGCCG
CGTTGGAGTCACCAGTGGTCGGATAAGCGGTCATTCGCTAGCATTACAGC
GGAAGTACCTTTGTTCGACCATGCCACTCACTCCTTTATCTGCATCGAGC
GGGGGAACAAGCGAGCCTTCCCACAACATGCATCAAGCCCCAAGCGCTGT
CACGCCGGTCCCTGCTGCCGTGCACGCTGCCCACAGCCACAtcggcgaag
aaggaggtcaTCAGGGTGGTATACTGCGATCACTGAAAGAGAACTGGGCG
AGGTTGACCCGAGTCCAAGAATACGATGGACAAATTTGGGAGTTGGCCTT
GCCCACGCTGGGTGCCGTGTTGATCGACCCTTGTCTGTCTCTAGTGGACA
CCATGTTTGTGGGAAAACTCGGCCACGTAGCCCTGGCATCGATGGGTCCA
TGCACGGCTCTCTACAACATGATCTTCGCCACAGCTTCTTGGTAAGTAAT
AATTGTTCCACGCCCTGCCTCAACATAGCATCTTGTACTCCGGCGCgcgt
cgccttccccccttttttgatttcctttccctttttctatGACACTGGAA
TTTCGGTTGTTCTTTCCAAATGCACAAGAGCGCGAAGTTGACTTTTGAAA
GCCGTGTACAGTAACTATAACCTCTTTTACACTCGTAACACCCGTTTCAA
GCATGTTTTCCGTGTCCACCGCCGTGCTGATCGCCCGCTACAAAGCCCTT
GGCGACGGACAGGCGACGGGCCGGACTCTCTTTACggccatcacctcctc
tgTCGCGTTGGGAATTTTTTTCACCGTCCTGATGGCGTCCCGACCGTCGC
AAGCCCTCCGCTTGATGGGGGCGAGCTCACCAGAGATGATTCGGCTCGGA
GCCCCTTATCTTCTTTGGCGTGCGACGGCTCTACCGGCCAATATGTTCCT
CCTGGTGGCAGGCGGCGCATTCCGCGGTATCGGAAACGCGAGGGAAAACT
TTACGAATGGACTCGTGGTGGGGCTAGTCAACTTGGTCCTCGACCCGGTT
TTGATGTTTTCGTGCAATCTGGGGGTGGCAGGCGCCGCGATGGCTACCGC
GATTGCCCAGTGGATCGGTGCTTTGTCGTACATCTTCAAGATGACCCGAA
GAAAAGAAGCGTTTGGGTTGAACCTAGGGTGGAAAATCATCCCGGGGATG
GCAGACGTGCAAGAGTTCCTGACCGCGGGGACGGCCATGCTCTTCCGCTC
CCTGTGCAATGTGGGGGCCTGGACCCTTATGGCATCGATAGCGACCCGGA
TGGGAGTGGTGGAGATTGCGGCGCATCAGTTGATCCTCAGCATGTGGCTG
GTTATAGCCTTCGTACAAGACGCGGTCGGGGCCGCGGGCCAGGTCTTGGT
CTCCCAGCAGCTTGGTAATCCGGGCAGCAGTCGGCATGCCAtccggaggg
gaaaagcccgGGCCCGCGCCATCGCGAAGAGGGTCATCAGTTTTTCCGCG
ATCATCGGCGTGGCCCTGTCTTTGATAGGTCagatcgtcctcccctccct
aaTCCCTCTCTTCTGCTCATCCCCTGAGGTAATCGCACTGACCAGTAGCG
TCTTGCCTATCGTCCTTCTCGGCTTCCCCGTGTGTTGCGTGGTATGGACG
TGGGATAGTGTTTACTATGGGGCAAGCGATTTCAAGTATAATGCTAAGGT
GATTgctgtctcgtcctccattgCTGTATCGTTAACGTTGGCGTCCTTGC
ACTACGAGTGGGGGTTGCTAGGGTTGTGGTCGTCGATGGTTTTTGTTTAT
TTTGGCTTACGTGTTGTCGCGCACTATAGGAGATTTAATTCAGAACACGG
TCCCTTCGGAAAGAGCACTTTGTCGTTGAATGAAAGGGATGATGGCGCAG
GCCAGACGTTGATGAGTGATGCGGTACCACAGATAAGCTGAAGAGTGGAT
GAAGAAGCACAAGGGTGAGACTGAAGAAGGCGAGGGTTGCGGTATGCTAA
ATATTAGACGACCTGGAATACGGACAATTAGacgtggaccgggaggaaag
TTGTATGGATTCGCAGTGGGCACAAGTTGGATGAGATGTGATATAACGTC
GACGCACCCCGTGACGCTTTAATTTCCAAATTGCCTCCTTGTGGCGACAA
AATCCATATGAGGACAAGTGGAACAGCCAAAGCGATCACGTCTGATCGAA
GCCGAGATAATTGGCTTTTCCTAATCAAATCACATGGCAGCTTCCAGTGC
GCGCTACACCGGGCACTCCGCTTTTCTCTGCAAGAGCACACGCCTTCATC
TGATAAGCCAAAGTGTACAAGAATGGGAGGTCTCAGATGAACCCTTCAAT
CATAGTAGAAGatgagagcaaggaggccgAGTCTCCTCAGCAAAGGGTGA
TGAAAAAGATGGCTAGCAACCGCATAATCAAAATTCAAAGGCATTCTCCA
GCATGCTTCGG back to topCoding sequence (CDS) from alignment at CM002456.1:1118677..1121437+ >rna1070 ID=rna1070|Name=rna1070|organism=Nannochloropsis gaditana|type=CDS|length=4062bp|location=Sequence derived from alignment at CM002456.1:1118677..1121437+ (Nannochloropsis gaditana)
ATGGGAAGTACATTAGGCACAGGATCCTTGGCAAATTTTGATTTTCTTGC
CGCTCTCGAATTCTCAGCCATCCACGAgctttcgtcgtcctcccttgctt
tAGTGACAACACGTTTGTGTAGAGCGGGGCGCGGTCTTTGTCGACGGATG
AACCTACACATCAACAGACGCAGCTATGCAGATACACGGATGTATCGTCT
TCACATTCTTCTACAATTAACGTTGCTTGTGGTAGTCACGGCGGCGTTTA
CCAGCTTGTCCGGAGGATCGCTTTCGACTTGCAGGCGCGGTCCAAGCACC
GGCTGTAGCACACCTCGCACCCTAGATGTTGAAAGGGGCGGCATCCGCCG
CGTTGGAGTCACCAGTGGTCGGATAAGCGGTCATTCGCTAGCATTACAGC
GGAAGTACCTTTGTTCGACCATGCCACTCACTCCTTTATCTGCATCGAGC
GGGGGAACAAGCGAGCCTTCCCACAACATGCATCAAGCCCCAAGCGCTGT
CACGCCGGTCCCTGCTGCCGTGCACGCTGCCCACAGCCACAtcggcgaag
aaggaggtcaTCAGGGTGGTATACTGCGATCACTGAAAGAGAACTGGGCG
AGGTTGACCCGAGTCCAAGAATACGATGGACAAATTTGGGAGTTGGCCTT
GCCCACGCTGGGTGCCGTGTTGATCGACCCTTGTCTGTCTCTAGTGGACA
CCATGTTTGTGGGAAAACTCGGCCACGTAGCCCTGGCATCGATGGGTCCA
TGCACGGCTCTCTACAACATGATCTTCGCCACAGCTTCTTGCATGTTTTC
CGTGTCCACCGCCGTGCTGATCGCCCGCTACAAAGCCCTTGGCGACGGAC
AGGCGACGGGCCGGACTCTCTTTACggccatcacctcctctgTCGCGTTG
GGAATTTTTTTCACCGTCCTGATGGCGTCCCGACCGTCGCAAGCCCTCCG
CTTGATGGGGGCGAGCTCACCAGAGATGATTCGGCTCGGAGCCCCTTATC
TTCTTTGGCGTGCGACGGCTCTACCGGCCAATATGTTCCTCCTGGTGGCA
GGCGGCGCATTCCGCGGTATCGGAAACGCGAGGGAAAACTTTACGAATGG
ACTCGTGGTGGGGCTAGTCAACTTGGTCCTCGACCCGGTTTTGATGTTTT
CGTGCAATCTGGGGGTGGCAGGCGCCGCGATGGCTACCGCGATTGCCCAG
TGGATCGGTGCTTTGTCGTACATCTTCAAGATGACCCGAAGAAAAGAAGC
GTTTGGGTTGAACCTAGGGTGGAAAATCATCCCGGGGATGGCAGACGTGC
AAGAGTTCCTGACCGCGGGGACGGCCATGCTCTTCCGCTCCCTGTGCAAT
GTGGGGGCCTGGACCCTTATGGCATCGATAGCGACCCGGATGGGAGTGGT
GGAGATTGCGGCGCATCAGTTGATCCTCAGCATGTGGCTGGTTATAGCCT
TCGTACAAGACGCGGTCGGGGCCGCGGGCCAGGTCTTGGTCTCCCAGCAG
CTTGGTAATCCGGGCAGCAGTCGGCATGCCAtccggaggggaaaagcccg
GGCCCGCGCCATCGCGAAGAGGGTCATCAGTTTTTCCGCGATCATCGGCG
TGGCCCTGTCTTTGATAGGTCagatcgtcctcccctccctaaTCCCTCTC
TTCTGCTCATCCCCTGAGGTAATCGCACTGACCAGTAGCGTCTTGCCTAT
CGTCCTTCTCGGCTTCCCCGTGTGTTGCGTGGTATGGACGTGGGATAGTG
TTTACTATGGGGCAAGCGATTTCAAGTATAATGCTAAGGTGATTgctgtc
tcgtcctccattgCTGTATCGTTAACGTTGGCGTCCTTGCACTACGAGTG
GGGGTTGCTAGGGTTGTGGTCGTCGATGGTTTTTGTTTATTTTGGCTTAC
GTGTTGTCGCGCACTATAGGAGATTTAATTCAGAACACGGTCCCTTCGGA
AAGAGCACTTTGTCGTTGAATGAAAGGGATGATGGCGCAGGCCAGACGTT
GATGAGTGATGCGGTACCACAGATAAGCTGAATGGGAAGTACATTAGGCA
CAGGATCCTTGGCAAATTTTGATTTTCTTGCCGCTCTCGAATTCTCAGCC
ATCCACGAgctttcgtcgtcctcccttgctttAGTGACAACACGTTTGTG
TAGAGCGGGGCGCGGTCTTTGTCGACGGATGAACCTACACATCAACAGAC
GCAGCTATGCAGATACACGGATGTATCGTCTTCACATTCTTCTACAATTA
ACGTTGCTTGTGGTAGTCACGGCGGCGTTTACCAGCTTGTCCGGAGGATC
GCTTTCGACTTGCAGGCGCGGTCCAAGCACCGGCTGTAGCACACCTCGCA
CCCTAGATGTTGAAAGGGGCGGCATCCGCCGCGTTGGAGTCACCAGTGGT
CGGATAAGCGGTCATTCGCTAGCATTACAGCGGAAGTACCTTTGTTCGAC
CATGCCACTCACTCCTTTATCTGCATCGAGCGGGGGAACAAGCGAGCCTT
CCCACAACATGCATCAAGCCCCAAGCGCTGTCACGCCGGTCCCTGCTGCC
GTGCACGCTGCCCACAGCCACAtcggcgaagaaggaggtcaTCAGGGTGG
TATACTGCGATCACTGAAAGAGAACTGGGCGAGGTTGACCCGAGTCCAAG
AATACGATGGACAAATTTGGGAGTTGGCCTTGCCCACGCTGGGTGCCGTG
TTGATCGACCCTTGTCTGTCTCTAGTGGACACCATGTTTGTGGGAAAACT
CGGCCACGTAGCCCTGGCATCGATGGGTCCATGCACGGCTCTCTACAACA
TGATCTTCGCCACAGCTTCTTGCATGTTTTCCGTGTCCACCGCCGTGCTG
ATCGCCCGCTACAAAGCCCTTGGCGACGGACAGGCGACGGGCCGGACTCT
CTTTACggccatcacctcctctgTCGCGTTGGGAATTTTTTTCACCGTCC
TGATGGCGTCCCGACCGTCGCAAGCCCTCCGCTTGATGGGGGCGAGCTCA
CCAGAGATGATTCGGCTCGGAGCCCCTTATCTTCTTTGGCGTGCGACGGC
TCTACCGGCCAATATGTTCCTCCTGGTGGCAGGCGGCGCATTCCGCGGTA
TCGGAAACGCGAGGGAAAACTTTACGAATGGACTCGTGGTGGGGCTAGTC
AACTTGGTCCTCGACCCGGTTTTGATGTTTTCGTGCAATCTGGGGGTGGC
AGGCGCCGCGATGGCTACCGCGATTGCCCAGTGGATCGGTGCTTTGTCGT
ACATCTTCAAGATGACCCGAAGAAAAGAAGCGTTTGGGTTGAACCTAGGG
TGGAAAATCATCCCGGGGATGGCAGACGTGCAAGAGTTCCTGACCGCGGG
GACGGCCATGCTCTTCCGCTCCCTGTGCAATGTGGGGGCCTGGACCCTTA
TGGCATCGATAGCGACCCGGATGGGAGTGGTGGAGATTGCGGCGCATCAG
TTGATCCTCAGCATGTGGCTGGTTATAGCCTTCGTACAAGACGCGGTCGG
GGCCGCGGGCCAGGTCTTGGTCTCCCAGCAGCTTGGTAATCCGGGCAGCA
GTCGGCATGCCAtccggaggggaaaagcccgGGCCCGCGCCATCGCGAAG
AGGGTCATCAGTTTTTCCGCGATCATCGGCGTGGCCCTGTCTTTGATAGG
TCagatcgtcctcccctccctaaTCCCTCTCTTCTGCTCATCCCCTGAGG
TAATCGCACTGACCAGTAGCGTCTTGCCTATCGTCCTTCTCGGCTTCCCC
GTGTGTTGCGTGGTATGGACGTGGGATAGTGTTTACTATGGGGCAAGCGA
TTTCAAGTATAATGCTAAGGTGATTgctgtctcgtcctccattgCTGTAT
CGTTAACGTTGGCGTCCTTGCACTACGAGTGGGGGTTGCTAGGGTTGTGG
TCGTCGATGGTTTTTGTTTATTTTGGCTTACGTGTTGTCGCGCACTATAG
GAGATTTAATTCAGAACACGGTCCCTTCGGAAAGAGCACTTTGTCGTTGA
ATGAAAGGGATGATGGCGCAGGCCAGACGTTGATGAGTGATGCGGTACCA
CAGATAAGCTGA back to top
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