rna107, rna107 (mRNA) Nannochloropsis gaditana

Overview
Namerna107
Unique Namerna107
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2491
Alignment locationCM002455.1:287855..289531 -

Link to JBrowse

Properties
Property NameValue
Productleucine carboxyl methyltransferase
Orig transcript idgnl|cribi|Naga_100033g31.8408.mrna
Orig protein idgnl|cribi|Naga_100033g31.8408
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:287855..289531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g31gene104Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30569.1cds107Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna107rna107-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna107 ID=rna107|Name=rna107|organism=Nannochloropsis gaditana|type=mRNA|length=2491bp
TTGTCCTTTGCGAGTATCTGAGTGCACATCTATCCCATGCAGAGAGGTCG
AAATAGACCATTGTCCAAGCCCGCCGTGGCCCCCTGAAAGCACATGGAGC
TTGGAAAGTTGTTCAGTCCTTACACAATGGGGCATTTTCAACTGCCTCAT
CGTATTGTGATGGCACCCCTGACAAGGATGAGGTCTGGACCGTGCCAAGT
CCCGACTCTTCTCAATGCCGAGTATTACGCCCAGCGTGCGTCAGCAGCCC
TTATTATTGGCGAGGCCACATACGTCGCACCAGAGGGGTATGGTTACTGC
AATAGTCCGGGTATCGTGAGCGACGAGCAGGTTGAAGGTCACAAGCTCTT
GACCCAGGCAGTTCACGACAAAGGCGGTCTCTTTTTTCTTCAACTGTGGC
ACGTGGGGCGGATATCACACCCCTCTATGCAGCCACAAGGACAACTTCCT
GTCGCTCCCAGCGGCATTGCGCCCAAGGATGTGAATGCTGCCACACATAT
GGGGCGACTACCCATTCCTACTCCTCGATCCCTAACGACATCGGAAATCC
AGTCAATGGTCGTAGAACCTTTCAGAAAAGCAGCATGCAATGCCCGAAGG
GCTCATTACGACGGTGTTGAGATTCACGCTGCCAACGGTTACCTTCTAGA
GCAATTTTTGAGTGACGGCACCAACCACCGTACGGATCAGTATGGTGGTA
ATATCGAGAATCGCTTTCGTGTCTTGCGCGAAGTATGCACAGCCGTCATT
GACGCTTGGGACGGCGACGGTCGGAGGGTCGGAGTACGTTTATCCCCGTC
TGGGACGTTCAATGATATGGCGGACTCGGACTGGATGAGTCACTGGACTT
ATATCGTCCGAGAATTGGATAAATTAGGCTTGGCCTACCTGCATGTCGTC
GAGCCACGCATCGACGGGAGTGCGGATCGTTACACGGACAGGGAGACAAA
AATCTCTACTACGTGGCGGAAGACGTGGAGAAACATCTGGTCAGGCACCT
TGATTGGAGCGGGTGGGTACACGCGACGAACGGCCGAGGCCGCACTTCGA
AATAAGGACCTTGACCTTGTGTGCTTTGGACGCAAGTTCATCTCCAATCC
AGATTTGCCTGCGCGTTTCGCGGCGGCCGCCAGGTCGGATGCCGGACAGA
GGGAGGCCAGCCGGGAGCAAGGTAGACGGGGGAGCAATGATAAAGGCTTT
CACACAGAGGAGGGAGAAATCGGAGGAGAGGAACGGGAAGAAGACGACGA
CGATGTCTCCTTCTTGAATCCTTATGAAAGAGAGACGTTTTACGGGGGCG
GTGCGCAGGGCTACACAGACTACCCTTTTTGGAAAAAGGGCGAGACAAGC
TAATGAAGGAACAGCATTTCGAGCCATGCCTTGACAATACTGTCAAAGGT
ATAATTTCTGAGGACTATGATTCTTCTGTGTCAGTCCCCCGGAGAGGCGT
CGCGCAATGGGTATTACTCCACACCTGAGTGGTGTCGGCACGCACAAAAC
CCAATGTGCGATGGACGCAGGGGAGCACACCACCGACAAACTGTACAATG
CCTTGACAACTGGAAAAAAAAAGATTGCTGACCTGCCATATATAGATATA
CACATACGTGACGTTGACGCGCCACATGTTCCTATTCACACAGCGAGCAC
ACCACAGCTTCCCACCGGGGACTGCCGTTCCTCCACTGCCCCGTTTCCTG
CGTTTCAACTGATCGCGAAAGTCACCTATGCACGATCAAGTCGTGGTACG
TCTCATGACTTGCTGCCCACGGTAGCGCGGATCAGATACGTTCGCATGAC
GTCCTTTTTCTCCGCACGAGGCGCCACCGGGAGGGCCCAAAGACCGTAAT
GAGCCCCGTTCTCTCCCACGGTCACCACCTCCACCTCTTCAAACCCCAAG
GTGGACAGGGTAGTCTCGGGCTCCTCCATAGCCGAGGAAAAAGTGCTGGT
CAGCCACTTGTCGCCGGCTTGCGCGCGGAGGGAGGCAAGAGTAAAGTCAT
TGACATGATCGGCGAGGAGGAGGCTCCCCGGGGAGGACAGCGCTCGAATT
ACGCCCAACATGGTCTGGACTCGAGGTTCTGGGAAGTAGTAAAGAAAGCC
CTCAAGGATCCACACCGTCTTCTTCTCGGGGTCGAATCCGGCCTCCTTGA
GCTGGCGCACCCAGTGCACGTCGTCGGCAAAGTCGCTAATGAGACGATGC
ACGCTCCGAGCCAGCAACGGGAAACGATCCGCCACCCCGGCCAGAACCGA
TGTCTTGTAGTCGAGGACTGGTTTTACGTCCAGCTCGTAAATTTGGCACT
TCTTCATTTGTTCCAGCCGGTAGCTATTGAATAGAAGTTGGAAAAGGGTC
ATGCCAGGTGGTATATGGTTAGGGTTCGTCTGCCAGAAGTACAACCTGCA
ACGACCAAAAATTTGAGGAATTCAGCTCATTATGAGCAGCACAGATAAAT
ATTCCTACCAATCTCTTAGCGACTTAAACCGACGCTGTCGC
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protein sequence of rna107

>rna107-protein ID=rna107-protein|Name=rna107|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MTLFQLLFNSYRLEQMKKCQIYELDVKPVLDYKTSVLAGVADRFPLLARS
VHRLISDFADDVHWVRQLKEAGFDPEKKTVWILEGFLYYFPEPRVQTMLG
VIRALSSPGSLLLADHVNDFTLASLRAQAGDKWLTSTFSSAMEEPETTLS
TLGFEEVEVVTVGENGAHYGLWALPVAPRAEKKDVMRTYLIRATVGSKS
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mRNA from alignment at CM002455.1:287855..289531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna107 ID=rna107|Name=rna107|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp|location=Sequence derived from alignment at CM002455.1:287855..289531- (Nannochloropsis gaditana)
GCGCTTTGGACCTTCATCCCCTCCAGTCTTGCACATCGACAGGGCTTCAC
TTTTGGGGGAAACTCCCTGTCAAATGTGCCGGTACTGGTACTCGTCCACA
GTGGTGCTGGTTTCGTCTTTTAGTCTACTATACCCTTTCACCGCCCTGAG
CTCGCCTCAGTCAGGAAGAGTCCCGGCGTCTAGCAAGGGTTTCAAGCCCA
CGTCCTCCTCAGAACACAGCACGGCTTCAAAGACAAACATGGCCTGCCCA
ATTGAAGAAGACGTAGCACTGTCGTCACGACGGTGCGCGGGGGCGCGGTA
TCTCTTCGAAGACGTGGTTCGTGACCCGCTGGCGCCCATTCTAGCCGGGG
AGGAAATCATCGCCAGCGAACGCATAAACAAGGCCAAAAATGCCGTCTAT
CCTGTGGTGGCCATCCGAACGCGCTGGATTGACGATAAAATTGAGGAAGC
TTTCAGCCTGGACCCGACCCTGACGCAAGTCGTACTTTGCGGCGCCGGTA
TGGACGCACGGGGGTAAGTGAAGCCGACTTCAACGACAGCGGAAGCGCCT
TGAAATAAATTTAGGGTGAATGAGCGACAGCGTCGGTTTAAGTCGCTAAG
AGATTGGTAGGAATATTTATCTGTGCTGCTCATAATGAGCTGAATTCCTC
AAATTTTTGGTCGTTGCAGGTTGTACTTCTGGCAGACGAACCCTAACCAT
ATACCACCTGGCATGACCCTTTTCCAACTTCTATTCAATAGCTACCGGCT
GGAACAAATGAAGAAGTGCCAAATTTACGAGCTGGACGTAAAACCAGTCC
TCGACTACAAGACATCGGTTCTGGCCGGGGTGGCGGATCGTTTCCCGTTG
CTGGCTCGGAGCGTGCATCGTCTCATTAGCGACTTTGCCGACGACGTGCA
CTGGGTGCGCCAGCTCAAGGAGGCCGGATTCGACCCCGAGAAGAAGACGG
TGTGGATCCTTGAGGGCTTTCTTTACTACTTCCCAGAACCTCGAGTCCAG
ACCATGTTGGGCGTAATTCGAGCGCTGTCCTCCCCGGGGAGCCTCCTCCT
CGCCGATCATGTCAATGACTTTACTCTTGCCTCCCTCCGCGCGCAAGCCG
GCGACAAGTGGCTGACCAGCACTTTTTCCTCGGCTATGGAGGAGCCCGAG
ACTACCCTGTCCACCTTGGGGTTTGAAGAGGTGGAGGTGGTGACCGTGGG
AGAGAACGGGGCTCATTACGGTCTTTGGGCCCTCCCGGTGGCGCCTCGTG
CGGAGAAAAAGGACGTCATGCGAACGTATCTGATCCGCGCTACCGTGGGC
AGCAAGTCATGAGACGTACCACGACTTGATCGTGCATAGGTGACTTTCGC
GATCAGTTGAAACGCAGGAAACGGGGCAGTGGAGGAACGGCAGTCCCCGG
TGGGAAGCTGTGGTGTGCTCGCTGTGTGAATAGGAACATGTGGCGCGTCA
ACGTCACGTATGTGTATATCTATATATGGCAGGTCAGCAATCTTTTTTTT
TCCAGTTGTCAAGGCATTGTACAGTTTGTCGGTGGTGTGCTCCCCTGCGT
CCATCGCACATTGGGTTTTGTGCGTGCCGACACCACTCAGGTGTGGAGTA
ATACCCATTGCGCGACGCCTCTCCGGGGGACTGACACAGAAGAATCATAG
TCCTCAGAAATTATACCTTTGACAGTA
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Coding sequence (CDS) from alignment at CM002455.1:287855..289531-

>rna107 ID=rna107|Name=rna107|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at CM002455.1:287855..289531- (Nannochloropsis gaditana)
ATGACCCTTTTCCAACTTCTATTCAATAGCTACCGGCTGGAACAAATGAA
GAAGTGCCAAATTTACGAGCTGGACGTAAAACCAGTCCTCGACTACAAGA
CATCGGTTCTGGCCGGGGTGGCGGATCGTTTCCCGTTGCTGGCTCGGAGC
GTGCATCGTCTCATTAGCGACTTTGCCGACGACGTGCACTGGGTGCGCCA
GCTCAAGGAGGCCGGATTCGACCCCGAGAAGAAGACGGTGTGGATCCTTG
AGGGCTTTCTTTACTACTTCCCAGAACCTCGAGTCCAGACCATGTTGGGC
GTAATTCGAGCGCTGTCCTCCCCGGGGAGCCTCCTCCTCGCCGATCATGT
CAATGACTTTACTCTTGCCTCCCTCCGCGCGCAAGCCGGCGACAAGTGGC
TGACCAGCACTTTTTCCTCGGCTATGGAGGAGCCCGAGACTACCCTGTCC
ACCTTGGGGTTTGAAGAGGTGGAGGTGGTGACCGTGGGAGAGAACGGGGC
TCATTACGGTCTTTGGGCCCTCCCGGTGGCGCCTCGTGCGGAGAAAAAGG
ACGTCATGCGAACGTATCTGATCCGCGCTACCGTGGGCAGCAAGTCATGA
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Synonyms
Publications