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Properties
| Property Name | Value |
|---|
| Product | deoxyribodipyrimidine photo-lyase |
| Orig transcript id | gnl|cribi|Naga_100006g106.8630.mrna |
| Orig protein id | gnl|cribi|Naga_100006g106.8630 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1075339..1077973 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1062 ID=rna1062|Name=rna1062|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp
GTCGTAATGAAATCCTGTCTAAACTTGGCTTCCGCAAAACACACTTCATT
TGTCAGGCACAGTCGCAATGATGCCAGGCCCTTGCGGTGTCGGCGGCCTT
GCGGGTCGCAGTGATCACATCGCGTCACGTTTGTCGCGGCTTTCAACTTT
TTCGTTTTCCGTGCTGGCAGTGCGGACATGGCCATTCCTCGCCATGCTTG
TCTCCCACCTCCAGCCCGCGCAACCCTTTCAACGTCGTCCACCTCCTCCA
CCTCCGTCCTCTCCCCCGCCCTCTTTTCCAAGCAAACCACCATTGCCGTT
CTCCTCCCGGTTGGCGAACCAGGGCAACAGCGCCAGCACCCGGTCCTCCT
GGCCTTCCTCACAGGTTTCCTCTTCTCCGTGGGAGAGCACAACCTTCCTT
TCCACCGCGGATCCGGCGCCGGAGGACAACGGTCCCTTTCGCCTCCTCTT
CGACCAGGCCACTGACCGCTTTCTTTTTCAGACGGCCGTCGTCGACCTCC
AGCAACCGGGACAAGACGGACCTCGCGTCCGGCTGATTGGCAGCGTGCAC
ATCGCGGAGCCCGCCTATTTCAAGGCGTTGGAGGCGTCCTGCGCGGACTG
TGACGTGGTCCTGTACGAAATGATTACCTCGGAAGGGAACGTGCTGAGGG
ACGGAACTGACGCCCGGTGGCCCTCCAAGGAGCAACTGGGCGTGGAGCTT
CAAGCCACTGACGGCCTGCGTCGCCTCGCTTCCTCCCACGGCCTGGAGCC
TCAGCTGGACAACATGCATTTCTTCGGCAAGAAGAACTGGTACCTGTCGG
ACATCGTACGGGAGGAACTCTGCAAGTTGCAGCGGTTGCGGGGAGAGCGC
ACCCTGGACGCGCCGGCCAAAGGGCGCTTGGGCCACGTTTTCGAGGTGCT
GGAGGTCTTCTGGAACGGGTTCACGTCCCGGGGGAAGGTCCTCCCCAAGT
TCCTTTTCTTGCGGCCGGGACAGGCGTTCTCGGCCTTGCCCTTCCGCGTC
CTTCGCTTGTGTATGTGGTTGACACCCGCGCCGGAGCTGCAGCTGCTCCT
GTTGGACTGGGCGCGTCAGTACCCTCCCGCGGGCGGTCTGAGCCGCGTCT
TGCGGTCCATGGTAGGGGCGTTGGTCCAAGGGGACTTTTTGACGCTGCGT
CGGCTCGCGTTCGCGCAGATGCTGACCTCGAGTCAAACGGCGCCCGCGCC
GGAGGTGCTGGTTCAGGAACGGGACTCGAAGGTGGTGCTGGACGTGGAGC
AGGCCCTGCGGACCGGCGCCAAGGACGTCGGGGTGCTCTACGGGGGCCTG
CATTTGAAAGATATTGAAGCGAAGCTGCGAGGACATTTAAATTTCACGCG
TGTCGAAGGCGGGATGGAAAAAGGGGCGGGGGGCCAAGAGACGCTCAAAA
GGGGGAGGGAGGCGCAGGCGGTGCAGTGGCATACAGCCTGGACGATGCAG
GCATTTACCCGGCAACGACAGGCCCTGGTAACCGCACTGTGCGTGGCCTT
GCCGGCTCTGTACCTGAGTGTGGGAGGGTTGGATTGGAGTGCCACGTTTG
GAGGCCTGGCAAAGGACGTGTCGCAGCATGTGGCAACTGAAGGCACCGCG
GCTGAGGCGCCAACAGTTGGGTGGCAAGAAGTAGTGCTCTACATGCTGCG
GCACATGTACATTTACTACGGACTTTCTCGCTGGGTAGTCGAGTGGGAGA
AACAGTTGTTTGAGATGCGCTGAGCTGCAGCGTTGTATAAGAGCTTTTTG
TCGAAATTGGGTGGGGAGGTTGGAGATGTAGATTGTCAATTTGTGATATT
AGACCGCGACATGGTCGCGCAACAGTCAAATTCGGCTTCAAAGCAATGTA
AATTTGACCATTTGTCGAGTCCGGA back to topprotein sequence of rna1062 >rna1062-protein ID=rna1062-protein|Name=rna1062|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MSAAKKRSGAIDEGTPGPTKKPKAGDSASIKLPDWFTPGRLRTLTTSCTK
PQAAGKCVVYWMARDQRVEDNWAMLLARHLATQQNVPVVVCFNLTPPVPN
DPLATLRAYGWMLRGLQEVEAALKRKHIPFYLLQEGPPEDMVPALVSELQ
ASAVITDFSPLRGPLADAQAVAAALDAAGRPLFQVDAHNIVPVWQASPKL
EVGARTIRKKIHDLLPKYFTPFPAEGLAPNDAAAVRALPGRSAPPEGFGY
EKVLGRLHLDSGVKEIDWLQPGARAGWENLDTFLEKGLRFFAEKRNDPTE
PAISNMSPYFNFGQVSVQAVMLKVKAVKRYHDSIAAFIEEGVVRRELSDN
FCFYQPEYDSLAAAAGWAQESLRVHTNDR back to topmRNA from alignment at CM002456.1:1075339..1077973+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1062 ID=rna1062|Name=rna1062|organism=Nannochloropsis gaditana|type=mRNA|length=2635bp|location=Sequence derived from alignment at CM002456.1:1075339..1077973+ (Nannochloropsis gaditana)
TGACAGTATTACTTCCCACGTGTGATAAATGAGGCAACCTGCACACTTGC
GTGTATCGTAGGGATCATAATCCTGGCGCCTTGGTCTCGATATTCATTAC
TTCCTCGGCTTCATGTGCCCAAACCCAACCTCCTCAAGGAGCTGGGGAAG
TGAAGTGTGATACCACGTTGCCACATCATTAAGCTTGACTGTCCACTTTC
CACCACATTCAAAAAGCTGTCAAGGACACGATTGCAGCAGCTATCGCAAT
TCAGCAACGATTGGTGGCTCcagccttctcctttcctgccaATTTCGGAG
CGTGGCAGTCGCTACCATCTTGCTCAGTACCCTTTTTCGCACGAGTGCCT
GGtcgccgttcctcccccgatCAAAAGGCGTGGGTTGCACCAGCACGTGG
ACAACTACTTTTACCCGAAGTCGTACTAGCCCTCGCGTGATCACTCCCAT
GAGCGCGGCGAAAAAACGAAGCGGCGCTATCGACGAGGGGACCCCCGGCC
CTACCAAGAAGCCCAAGGCCGGAGACTCGGCCTCGATAAAGTTGCCCGAC
TGGTTCACGCCGGGTCGGCTTCGTACACTCACCACAAGCTGCACAAAACC
GCAAGCGGCTGGCAAGTGCGTTGTGTACTGGATGGCGCGTGACCAACGTG
TGGAAGATAACTGGGCCATGCTCCTGGCCAGGCATTTGGCCACCCAACAA
AACGTGCCCGTGGTGGTGTGCTTCAATCTGACTCCACCCGTCCCTAACGA
CCCCTTGGCTACCTTGCGAGCGTACGGATGGATGTTACGGGGCCTGCAag
aagtggaggcggcgctGAAGCGGAAGCACATACCATTCTACTTGCTCCAG
GAGGGCCCGCCCGAAGACATGGTCCCGGCCCTTGTCTCCGAGCTGCAAGC
GAGCGCAGTCATCACCGATTTCTCGCCCCTTCGTGGGCCCCTGGCAGACG
CCCAAGCCGTGGCAGCCGCCTTGGACGCGGCGGGCCGGCCTCTCTTCCAA
GTAGACGCGCATAACATTGTCCCCGTCTGGCAAGCCTCTCCCAAGCTCGA
GGTTGGGGCCCGGACCATCCGCAAGAAGATCCACGACCTCTTGCCCAAAT
ACTTCACACCTTTCCCCGCCGAGGGCCTGGCGCCGAACGACGCCGCGGCG
GTGAGAGCGCTCCCGGGTCGCTCCGCCCCGCCTGAGGGGTTTGGGTATGA
GAAGGTCCTAGGGCGCCTCCACCTGGACAGCGGGGTCAAGGAGATCGATT
GGCTCCAGCCAGGCGCTCGAGCGGGCTGGGAGAACCTGGATACCTTTCTG
GAGAAGGGCTTGAGATTCTTCGCCGAGAAGCGGAACGACCCCACGGAGCC
GGCCATTTCGAACATGTCGCCATACTTCAACTTCGGGCAGGTCTCCGTCC
AGGCGGTGATGCTGAAGGTCAAAGCAGTCAAGCGCTACCACgactccatc
gccgccttcatTGAGGAAGGAGTCGTCAGGCGAGAGCTCTCAGACAATTT
CTGCTTCTACCAGCCCGAATATGACTcgctggcggcggcagcagggTGGG
CGCAGGAGtccctccgggtccacacgAACGATCGGTAAGAGGAGGTTGTC
GGTCCACCCGAGCGGTGCAGTGCCGAAGGTCATTTTTTGTCCTGCAGGCA
ATCCACGAGTCTCTCTTGTGACGATGCAAATCAAGGAGCACGCTGgtcac
tccccctccctctctggcccccttcctccctcatcaggCGGCAGTTCTGC
TACACggccgaggccctggaggccggTCTCACGCACGACCAGCTTTGGAA
CGCCTCGCAGCTCCAACTggtgcaggaagggaaactCCACGGATTCCTGC
GCATGTACTGGGCGAAGAAGATCTTGGAGTGGACCGCCACCCCtgccgag
gccctggccctcgcTCTGCGCCTCAACGACCGCTTCTCCCTGGACGGGCG
GGACCCGAACGGCTTTGTTGGCGTCGGTTGGTCCGTGATGGGTGTGCACG
ATATGGGGTGGACGGAGCGGCGGATCACTGGGAAGATCAGGTAGGGGACA
AGGTGGTATGGAGGATGCGGGCTGTGACGCCTCCATTGGGACACGCTGAT
TCACCCGATGCCTTTCCCCGCGCCCATAGGTACATGAACTACGCTGGCTG
CCTTCGAAAATTCGACGTGGCAAAGTTTTGTGCCCGCTACCCTGCTGCCA
TCGAAGCGGCCCAAAAAATCCAGTCCACGACACAACCCAACGGGGAGGGC
CCAGTTCCTATAAAAGCAGCgtcggggaaggaaggaggcgcggaaaaagg
gggggagggagggaaagcgggaaagGACAAGTTGAAGCAGTGAGGGCGTT
CGGTGGTCGGGGTCCTGTACAGAGGCGAGTGAGGGACGGTGTGGCGGGAC
GTTTTATAAGAGAATGGTGATGGTTTGGGCCCGATATCAAGGTGGGGAGT
GGGCAACGGGGGTCGGAATGGACGCAGCGGTCGTGGAAATGACAAAGACC
ATGCTCCCGGGCTCTCGAGGTGACTTGTGTGCGTTTGCTTCCATATTTGT
ACGATACTTTGCGCACGATCGTtacatcctccctcgccgtccccTGCCCC
TACACCCGACCCGCAAAATGTGGCATGGTCACTCT back to topCoding sequence (CDS) from alignment at CM002456.1:1075339..1077973+ >rna1062 ID=rna1062|Name=rna1062|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002456.1:1075339..1077973+ (Nannochloropsis gaditana)
ATGAGCGCGGCGAAAAAACGAAGCGGCGCTATCGACGAGGGGACCCCCGG
CCCTACCAAGAAGCCCAAGGCCGGAGACTCGGCCTCGATAAAGTTGCCCG
ACTGGTTCACGCCGGGTCGGCTTCGTACACTCACCACAAGCTGCACAAAA
CCGCAAGCGGCTGGCAAGTGCGTTGTGTACTGGATGGCGCGTGACCAACG
TGTGGAAGATAACTGGGCCATGCTCCTGGCCAGGCATTTGGCCACCCAAC
AAAACGTGCCCGTGGTGGTGTGCTTCAATCTGACTCCACCCGTCCCTAAC
GACCCCTTGGCTACCTTGCGAGCGTACGGATGGATGTTACGGGGCCTGCA
agaagtggaggcggcgctGAAGCGGAAGCACATACCATTCTACTTGCTCC
AGGAGGGCCCGCCCGAAGACATGGTCCCGGCCCTTGTCTCCGAGCTGCAA
GCGAGCGCAGTCATCACCGATTTCTCGCCCCTTCGTGGGCCCCTGGCAGA
CGCCCAAGCCGTGGCAGCCGCCTTGGACGCGGCGGGCCGGCCTCTCTTCC
AAGTAGACGCGCATAACATTGTCCCCGTCTGGCAAGCCTCTCCCAAGCTC
GAGGTTGGGGCCCGGACCATCCGCAAGAAGATCCACGACCTCTTGCCCAA
ATACTTCACACCTTTCCCCGCCGAGGGCCTGGCGCCGAACGACGCCGCGG
CGGTGAGAGCGCTCCCGGGTCGCTCCGCCCCGCCTGAGGGGTTTGGGTAT
GAGAAGGTCCTAGGGCGCCTCCACCTGGACAGCGGGGTCAAGGAGATCGA
TTGGCTCCAGCCAGGCGCTCGAGCGGGCTGGGAGAACCTGGATACCTTTC
TGGAGAAGGGCTTGAGATTCTTCGCCGAGAAGCGGAACGACCCCACGGAG
CCGGCCATTTCGAACATGTCGCCATACTTCAACTTCGGGCAGGTCTCCGT
CCAGGCGGTGATGCTGAAGGTCAAAGCAGTCAAGCGCTACCACgactcca
tcgccgccttcatTGAGGAAGGAGTCGTCAGGCGAGAGCTCTCAGACAAT
TTCTGCTTCTACCAGCCCGAATATGACTcgctggcggcggcagcagggTG
GGCGCAGGAGtccctccgggtccacacgAACGATCGGTAA back to top
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