rna1060, rna1060 (mRNA) Nannochloropsis gaditana

Overview
Namerna1060
Unique Namerna1060
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002456.1:1071667..1073297 -

Link to JBrowse

Properties
Property NameValue
Productdihydrolipoamide s-acetyltransferase
Orig transcript idgnl|cribi|Naga_100006g108.8633.mrna
Orig protein idgnl|cribi|Naga_100006g108.8633
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1071667..1073297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g108gene1021Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1060rna1060-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29544.1cds1059Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1060 ID=rna1060|Name=rna1060|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGCCAGCTGTCACATGCACGTCAGGAGCATGCAGCGCCAGTATCTTACC
CAGGCCGTCTTCCCGCTCGCGTAACCCCCTCTTTATTCATTCGTTGACAT
TCACACAGACGGCGGTGGTAATGAGGACGATGGGTAGCGTCGTTATGCGT
GGTGCTCGCAATGCGCGCAGAGCAAGCCAAGCAAGTGGTAGCGGGGGAAG
GACACATAACGTGGTAGGCTTCGCAGGTCCACGCATTACTCTCACGCGAA
GAGGGGTAACTATTCCTTCGGCCCGAGCAAATAGACGTCTACAACGCCAG
TATGAATTCGGCATGGCTCTTCGGCAACAAGCATTACCTGCCTCCGTGGT
GATGCTGGATGCGGCCACTGGGGTGGAGACACGCATTGCGGCGCTTTTCA
TGGGAGGAGGGCTGGACGATGATGATGGAACGGTGCGTTGTCTGTGGGTT
TCTTACCGTCCACGATTTCTCTTTTTCCTATCTCCTTTCCTCACCCCAGT
TGACGTGCCATCTCCTCTTCCTCTTCCTTCTCCATCACCAACCCCTCCGC
GCGTGCAGATGATTGCCGGATACCTCTGTCCAGCATCTTGTTGCCTCTTA
CACAATATTGTTGACATCTACGAGCCCACGTTGCGTCCGTTAAGCACTGT
AGGAGGACGGCAATTATCTGAAAGACTAGCTAGTTGA
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protein sequence of rna1060

>rna1060-protein ID=rna1060-protein|Name=rna1060|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MVLSAGTRRLFNPSQSVFYVRAAVCKPVQPYRRCGLSALVRTLRREHSTA
FIPTHRRLSTADGSGDNGTQSHDPPHFKLILPDIGQTSKTGNLTRWRKAE
GDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAV
FVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKL
VRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFF
LEEGRGVVHDMEAAMCKAGEEGKGEPVEK
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mRNA from alignment at CM002456.1:1071667..1073297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1060 ID=rna1060|Name=rna1060|organism=Nannochloropsis gaditana|type=mRNA|length=1631bp|location=Sequence derived from alignment at CM002456.1:1071667..1073297- (Nannochloropsis gaditana)
GAGTCGCGACGACACGGCGATGATATAGATGCTCACACAAGAAATATGTT
CGTCCGCCGATGTTTTAGAATGCTTGTGGTCCGTTGTACAACAATAATAT
ATAACCTAGAGGCGTGTAATCCGCTTGAGGTCTTTCCGGGACGAATTTTT
ACATCTAGGAGCTACTCGATTCTCCCTCGTATGTCGAGATCCCTGCATGT
GTGAGCCCCGGCCTCTGTTCCAGCAACTCACCATCCACCAGAGATGATTG
TCGAGATAAAAAACTTGATGATGCTTTATCACAATCACATGACTGAAAAC
ATGTGTGATTGCGCTTGATTCTGCGATATTGCCTGTCATTTCTGACACGC
GTTACTCCCTTCAAGCACCCTCCTAGGACTTTAAGAACAAAGTGAACAAC
ATAGCGACATAGTATCATTCGGTCAAAAGCAGAATCTATCGGCTAATGGT
GCTTTCCGCGGGCACTCGTCGGCTTTTTAACCCCTCACAAAGTGTTTTCT
ACGTGCGTGCCGCGGTTTGCAAGCCAGTTCAGCCCTATCGACGCTGTGGG
TTGTCCGCCTTGGTCCGCACACTTCGACGAGAGCATTCGACCGCATTCAT
TCCGACGCATCGACGACTATCGACAGCCGACGGCAGTGGTGACAATGGGA
CGCAGAGCCATGACCCACCACATTTCAAACTGATTTTGCCGGACATAGGT
CAGACAAGCAAAACAGGCAACCTCACTCGGTGGAGGAAAGCGGAGGGCGA
CGTGATCAAAAACGGGGACGTGGTCTGCGAAGTGGAAATGGACCAATTTA
ACGTGGGCATGGAGGTTGACGACAAGGGCTACCTGGCCCGTATTTGTGAG
TAAACAGCTGGAGGAGCTCGGTGATTTGACGATATCCTGGACCCTGGTCT
TGGTCTGCCCTATGCCTCCTGTTCGCCCTTCTTTCCTTCCTGCTCTGCGT
GGCCGACGCGCCGGCCGAGAGTTTGTGCCTTGTCTCTATTTGCTTGGACT
AGACTGCGGTCTCACGCTCTATCTAACGCACCAAGACGCTTTCTTCCCCC
CCCTATCCACAGTGGTTCCGGCAGGGACGCGAGGAGTGCCCGCGGGTGAA
GCTTTGGCAGTGTTTGTCTACGAGGAGCAGTACAAGGACGCCTTCAGCTC
CTTGCCTCGCTACCACGCAGGGGGAGGGGGAGCGTCAGAGGCGAGTGCGG
GGGCGGAGGAAGGCGAGATGGCGATCGACGGGGTCTCGCTCTTGAAGTTC
TTGCACAAGCTTGTGCGGAATGGATCAATCAAGGATAAAGGTCCGAGGGG
AAGGAGAAGGGTATCCAGCAATAATCTCCTTCGGCGCTTGGGTGCGCCAT
GTCGTGGCGTTCCCGTCCTGTGACTTACTGCTCCATCCCTTCGATCTTCT
CTCCCCCTCCCCACCCCAGAGTTTGCGCAGAAGCTCCAAACCCTGGCCCG
GCACGAAGACAAGCAGCTTTTGCGTGTGTTCGAAGCGAGCTTTGAGGGGG
AGGGTCCTCGGAGGGAGGAGGACTTCGACCTCGAGTTCTTCTTGGAGGAG
GGGCGGGGGGTGGTGCACGACATGGAGGCGGCCATGTGCAAGGCAGGGGA
GGAGGGGAAAGGGGAGCCGGTTGAAAAATAG
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Coding sequence (CDS) from alignment at CM002456.1:1071667..1073297-

>rna1060 ID=rna1060|Name=rna1060|organism=Nannochloropsis gaditana|type=CDS|length=2520bp|location=Sequence derived from alignment at CM002456.1:1071667..1073297- (Nannochloropsis gaditana)
AGTTTGCGCAGAAGCTCCAAACCCTGGCCCGGCACGAAGACAAGCAGCTT
TTGCGTGTGTTCGAAGCGAGCTTTGAGGGGGAGGGTCCTCGGAGGGAGGA
GGACTTCGACCTCGAGTTCTTCTTGGAGGAGGGGCGGGGGGTGGTGCACG
ACATGGAGGCGGCCATGTGCAAGGCAGGGGAGGAGGGGAAAGGGGAGCCG
GTTGAAAAATAGTGGTTCCGGCAGGGACGCGAGGAGTGCCCGCGGGTGAA
GCTTTGGCAGTGTTTGTCTACGAGGAGCAGTACAAGGACGCCTTCAGCTC
CTTGCCTCGCTACCACGCAGGGGGAGGGGGAGCGTCAGAGGCGAGTGCGG
GGGCGGAGGAAGGCGAGATGGCGATCGACGGGGTCTCGCTCTTGAAGTTC
TTGCACAAGCTTGTGCGGAATGGATCAATCAAGGATAAAGATGGTGCTTT
CCGCGGGCACTCGTCGGCTTTTTAACCCCTCACAAAGTGTTTTCTACGTG
CGTGCCGCGGTTTGCAAGCCAGTTCAGCCCTATCGACGCTGTGGGTTGTC
CGCCTTGGTCCGCACACTTCGACGAGAGCATTCGACCGCATTCATTCCGA
CGCATCGACGACTATCGACAGCCGACGGCAGTGGTGACAATGGGACGCAG
AGCCATGACCCACCACATTTCAAACTGATTTTGCCGGACATAGGTCAGAC
AAGCAAAACAGGCAACCTCACTCGGTGGAGGAAAGCGGAGGGCGACGTGA
TCAAAAACGGGGACGTGGTCTGCGAAGTGGAAATGGACCAATTTAACGTG
GGCATGGAGGTTGACGACAAGGGCTACCTGGCCCGTATTTAGTTTGCGCA
GAAGCTCCAAACCCTGGCCCGGCACGAAGACAAGCAGCTTTTGCGTGTGT
TCGAAGCGAGCTTTGAGGGGGAGGGTCCTCGGAGGGAGGAGGACTTCGAC
CTCGAGTTCTTCTTGGAGGAGGGGCGGGGGGTGGTGCACGACATGGAGGC
GGCCATGTGCAAGGCAGGGGAGGAGGGGAAAGGGGAGCCGGTTGAAAAAT
AGTGGTTCCGGCAGGGACGCGAGGAGTGCCCGCGGGTGAAGCTTTGGCAG
TGTTTGTCTACGAGGAGCAGTACAAGGACGCCTTCAGCTCCTTGCCTCGC
TACCACGCAGGGGGAGGGGGAGCGTCAGAGGCGAGTGCGGGGGCGGAGGA
AGGCGAGATGGCGATCGACGGGGTCTCGCTCTTGAAGTTCTTGCACAAGC
TTGTGCGGAATGGATCAATCAAGGATAAAGATGGTGCTTTCCGCGGGCAC
TCGTCGGCTTTTTAACCCCTCACAAAGTGTTTTCTACGTGCGTGCCGCGG
TTTGCAAGCCAGTTCAGCCCTATCGACGCTGTGGGTTGTCCGCCTTGGTC
CGCACACTTCGACGAGAGCATTCGACCGCATTCATTCCGACGCATCGACG
ACTATCGACAGCCGACGGCAGTGGTGACAATGGGACGCAGAGCCATGACC
CACCACATTTCAAACTGATTTTGCCGGACATAGGTCAGACAAGCAAAACA
GGCAACCTCACTCGGTGGAGGAAAGCGGAGGGCGACGTGATCAAAAACGG
GGACGTGGTCTGCGAAGTGGAAATGGACCAATTTAACGTGGGCATGGAGG
TTGACGACAAGGGCTACCTGGCCCGTATTTAGTTTGCGCAGAAGCTCCAA
ACCCTGGCCCGGCACGAAGACAAGCAGCTTTTGCGTGTGTTCGAAGCGAG
CTTTGAGGGGGAGGGTCCTCGGAGGGAGGAGGACTTCGACCTCGAGTTCT
TCTTGGAGGAGGGGCGGGGGGTGGTGCACGACATGGAGGCGGCCATGTGC
AAGGCAGGGGAGGAGGGGAAAGGGGAGCCGGTTGAAAAATAGTGGTTCCG
GCAGGGACGCGAGGAGTGCCCGCGGGTGAAGCTTTGGCAGTGTTTGTCTA
CGAGGAGCAGTACAAGGACGCCTTCAGCTCCTTGCCTCGCTACCACGCAG
GGGGAGGGGGAGCGTCAGAGGCGAGTGCGGGGGCGGAGGAAGGCGAGATG
GCGATCGACGGGGTCTCGCTCTTGAAGTTCTTGCACAAGCTTGTGCGGAA
TGGATCAATCAAGGATAAAGATGGTGCTTTCCGCGGGCACTCGTCGGCTT
TTTAACCCCTCACAAAGTGTTTTCTACGTGCGTGCCGCGGTTTGCAAGCC
AGTTCAGCCCTATCGACGCTGTGGGTTGTCCGCCTTGGTCCGCACACTTC
GACGAGAGCATTCGACCGCATTCATTCCGACGCATCGACGACTATCGACA
GCCGACGGCAGTGGTGACAATGGGACGCAGAGCCATGACCCACCACATTT
CAAACTGATTTTGCCGGACATAGGTCAGACAAGCAAAACAGGCAACCTCA
CTCGGTGGAGGAAAGCGGAGGGCGACGTGATCAAAAACGGGGACGTGGTC
TGCGAAGTGGAAATGGACCAATTTAACGTGGGCATGGAGGTTGACGACAA
GGGCTACCTGGCCCGTATTT
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Synonyms
Publications