EWM29544.1, cds1059 (CDS) Nannochloropsis gaditana

Overview
NameEWM29544.1
Unique Namecds1059
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1072453..1072852 -
Alignment locationCM002456.1:1072008..1072235 -
Alignment locationCM002456.1:1071667..1071878 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29544.1
Productdihydrolipoamide s-acetyltransferase
Orig transcript idgnl|cribi|Naga_100006g108.8633.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1072453..1072852 -
CM002456.1supercontigCM002456.1:1072008..1072235 -
CM002456.1supercontigCM002456.1:1071667..1071878 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR000089Biotin_lipoyl
Homology
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|585112115|gb|EWM29544.1| (dihydrolipoamide s-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
Query:    1 MVLSAGTRRLFNPSQSVFYVRAAVCKPVQPYRRCGLSALVRTLRREHSTAFIPTHRRLSTADGSGDNGTQSHDPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHDMEAAMCKAGEEGKGEPVEK 279
            MVLSAGTRRLFNPSQSVFYVRAAVCKPVQPYRRCGLSALVRTLRREHSTAFIPTHRRLSTADGSGDNGTQSHDPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHDMEAAMCKAGEEGKGEPVEK
Sbjct:    1 MVLSAGTRRLFNPSQSVFYVRAAVCKPVQPYRRCGLSALVRTLRREHSTAFIPTHRRLSTADGSGDNGTQSHDPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHDMEAAMCKAGEEGKGEPVEK 279          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|298704814|emb|CBJ48962.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 110.538 bits (275), Expect = 2.016e-24
Identity = 63/190 (33.16%), Postives = 101/190 (53.16%), Query Frame = 0
Query:   73 DPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKL-----VRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGV 257
            +P H  + +P I +  +   LT W+   GDVI+ GDVVCE+E++QF+VG++V+  G+LA ILV AGT GVP G  +   V+ E+       +  Y       SE      + E+  D      +   L     +RNG +  +  +  L +LAR++D +LL+ FE  FEG+  + + D D + FL + + +
Sbjct:  178 EPRHAHIEMPTITEAERVATLTSWKVQVGDVIEVGDVVCEIELEQFSVGVKVETPGFLAEILVEAGTEGVPVGTDIGTIVHSEE------EIALYQQAQAHESEDKEVKADTEVIADPAGTFSWKDVLKDVLRLRNGGMLSEGESSTLMSLARNKDSELLQAFEGCFEGD--KYKGDIDDDLFLAQAKDI 359          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|813164224|ref|XP_012203172.1| (hypothetical protein SPRG_08540 [Saprolegnia parasitica CBS 223.65] >gi|641532136|gb|KDO26179.1| hypothetical protein SPRG_08540 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 95.9005 bits (237), Expect = 3.858e-20
Identity = 68/201 (33.83%), Postives = 94/201 (46.77%), Query Frame = 0
Query:   71 SHDPPHFKLILPDI--GQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAI------DGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHDMEA 263
            S  P H K  L DI   Q  +   L +W K EG  +  G  +C++E  +   GME DD GYLA+I VPAG   V   + LAV V +E+        P   A     SE         + +      DG  LL+ L +L + G+   +   + L++LAR  D +LLRV+  SF  EG      FD EFF+E    +V +  A
Sbjct:   23 SKLPNHIKFRLMDIEFTQVMEGSKLVKWYKQEGQKVGPGGPLCDIETPELIFGMETDDAGYLAKIFVPAGAENVRPNQVLAVIVPKEE-----DIAPFIQALAENPSEIEEYKPSTPVVVDPTTITDGSDLLRVLSQLNKEGAFPSESDYKVLKSLARKNDAELLRVYSGSFLAEGGAA---FDKEFFVENCLDLVEEHAA 215          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|698807226|ref|XP_009836642.1| (hypothetical protein H257_11423 [Aphanomyces astaci] >gi|574108198|gb|ETV73706.1| hypothetical protein H257_11423 [Aphanomyces astaci])

HSP 1 Score: 95.1301 bits (235), Expect = 9.190e-20
Identity = 65/189 (34.39%), Postives = 92/189 (48.68%), Query Frame = 0
Query:   74 PPHFKLIL--PDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGA--EEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVV 258
            P H K+ +   DI QT +   L RW   EGD I  G  +CEVE       +E +D+GYLA+I VPA +  V   E LAV V  E     F +    H       + S+ A         DG  LL+ L  L + G+   ++  + L++LAR  D+QLL V++ SFE +       FD +FF+E    +V
Sbjct:   31 PDHIKIRMLDMDITQTIEGSKLLRWFANEGDKIGPGKPICEVETPDLLFSLESEDEGYLAKIFVPAKSDHVRPNEVLAVIVPTEDDIAPFLTALTEHPDEIEVHKKSSTAITASDSTPTDGADLLRVLSHLHKEGAFPSEDVYKTLKSLARKNDEQLLLVYKGSFEEDN--TTSGFDKDFFVENCVDLV 217          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|669149544|ref|XP_008610334.1| (hypothetical protein SDRG_06335 [Saprolegnia diclina VS20] >gi|530737986|gb|EQC36228.1| hypothetical protein SDRG_06335 [Saprolegnia diclina VS20])

HSP 1 Score: 93.9745 bits (232), Expect = 1.535e-19
Identity = 67/201 (33.33%), Postives = 93/201 (46.27%), Query Frame = 0
Query:   71 SHDPPHFKLILPDI--GQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAFSSLPRYHAGGGGASEASAGAEEGEMAI------DGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHDMEA 263
            S  P H K  L DI   Q  +   L +W K EG  +  G  +C++E  +   GME DD GYLA+I VPAG   V   + LAV V +E+        P   A     SE         + +      DG  LL+ L +L + G+   +   + L++LAR  D +LLRV+  SF  E       FD EFF+E    +V +  A
Sbjct:   23 SKLPNHIKFRLMDIEFTQVMEGSKLVKWYKQEGQKVGPGGPLCDIETPELIFGMETDDAGYLAKIFVPAGAENVRPNQVLAVIVPKEE-----DIAPFIQALAENPSEIEEYKPSTPVVVDPTTITDGSDLLRLLSQLNKEGAFPTESDYKVLKSLARKNDAELLRVYSGSFLAESGAA---FDKEFFVENCLDLVEEHAA 215          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|1173929459|gb|OQR82687.1| (hypothetical protein ACHHYP_15654 [Achlya hypogyna])

HSP 1 Score: 93.9745 bits (232), Expect = 1.568e-19
Identity = 68/200 (34.00%), Postives = 96/200 (48.00%), Query Frame = 0
Query:   71 SHDPPHFKLILPDI--GQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAF--------SSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHD 260
            S  P H K  L DI   Q  +   + +W K EG  +  G  +C++E  +   GME DDKGYLA+I VP G   V   + LAV V +E+    F        + +  Y A       AS+   E     DG  LL+ L +L + G+   +   + L++LAR  D +LLRV+  SF  EG      FD EFF+E    +V +
Sbjct:   23 SKLPEHIKFRLMDIEFTQAIEGSKVIKWYKKEGQEVGPGGPLCDIETPELIFGMETDDKGYLAKIFVPEGADNVRPNQVLAVIVPQEEDIKPFLQALAENPTEIEEYKA------PASSSPIETASPTDGGDLLRVLSQLNKEGAFPSEGDYKLLKSLARKNDAELLRVYSGSFLIEGGTA---FDKEFFVENCLDLVEE 213          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|1214698378|gb|OWZ11413.1| (Dihydrolipoamide s-acetyltransferase [Phytophthora megakarya])

HSP 1 Score: 93.9745 bits (232), Expect = 3.933e-19
Identity = 71/232 (30.60%), Postives = 110/232 (47.41%), Query Frame = 0
Query:   41 RTLRREHSTAFIPTHRRLSTADGSGDNGTQSHD----PPHFKLILPD-----IGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQ--------YKDAFSSLPRYHAGGGGASEA---SAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLE 252
            R L   H+   +     L ++DG      + H     P H K  +PD     +G  +    LT+W   EG  +K+G  +CE++       +E  D+G++AR+LV  G   V  G+ LA+ V  E          KD   S+    AG  GA +    SA    G  A   V  L+ ++KL + G   D++  + L++LAR  D+QLL  ++AS+E +G   E  FD +FF+E
Sbjct:   13 RRLTVAHTRKNVLLQTALFSSDGEAPPKEEEHKEVALPSHIKFRMPDLDFKEVGSGAGETTLTKWHVQEGAAVKDGTHMCEIDTPDLCFQLESGDEGFIARLLVNEGAHNVAPGQPLAIIVPTEAEIQLFVKVLKDNPRSIEGRSAGQVGAEDMVARSASTPTGNAASSDV--LRMINKLHKEGLFHDEKTLKVLKSLARKNDEQLLTTYKASYE-DGVLEEAAFDRDFFVE 241          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|1173945129|gb|OQR93795.1| (hypothetical protein THRCLA_08344 [Thraustotheca clavata])

HSP 1 Score: 92.0485 bits (227), Expect = 8.846e-19
Identity = 63/194 (32.47%), Postives = 91/194 (46.91%), Query Frame = 0
Query:   74 PPHFKLILPDI--GQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQ----YKDAFSSLP-RYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVVHD 260
            P H K  L DI   Q  +   L +W K EGD +  G  +C++E  +   GME DD GYLA+I VP G   V   + L V V +E     +  A +  P          S   +   +     DG  LL+ L  L + G+  ++   + L++LAR  D +LLRV+  SF  EG      FD +FF+E    +V +
Sbjct:   25 PQHIKFRLMDIEFTQVMEGSKLVKWYKKEGDKVGPGGPLCDIETPELIFGMESDDVGYLAKIFVPEGAENVRPNQVLGVIVPKETDIPPFLQALAENPTEIEEYKTPTSSTQSTPVDPATVTDGSDLLRVLSHLNKEGAFSNESDYKVLKSLARKNDAELLRVYSGSFLAEGGAA---FDKDFFVENCLDLVEE 215          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|673031492|ref|XP_008869707.1| (hypothetical protein H310_06428 [Aphanomyces invadans] >gi|574474858|gb|ETW01859.1| hypothetical protein H310_06428 [Aphanomyces invadans])

HSP 1 Score: 92.0485 bits (227), Expect = 1.157e-18
Identity = 63/198 (31.82%), Postives = 98/198 (49.49%), Query Frame = 0
Query:   67 NGTQSHDPPHFKLIL--PDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQ----YKDAFSSLPRYHAGGGGASEASAGAEEGEMAIDGVSLLKFLHKLVRNGSIKDKEFAQKLQTLARHEDKQLLRVFEASFEGEGPRREEDFDLEFFLEEGRGVV 258
            +   S  P H K+ +   DI QT +   L RW   EGD I  G  +CEV+  +    +E +D+GY+A+I VPA +  V   E LAV V  E     + +A +  P        ++ + A +E      DG  LL+ L  L + G+   ++  + L++LAR  D QLL V++ SF+ +       FD +FF+E    +V
Sbjct:   24 HANSSKLPEHIKIRMLDMDITQTIEGSKLLRWFAKEGDKIGPGKPICEVDTPELLFSIESEDEGYIAKIFVPAQSERVRPNEVLAVIVPTESDIPPFLEALAEHPDEIEVHKPSTPSIATSE--STPTDGADLLRVLSHLNKEGAFPSEDVYKTLKSLARKNDDQLLLVYKGSFDEDN--TTSGFDKDFFIENCIDLV 217          
BLAST of EWM29544.1 vs. NCBI_GenBank
Match: gi|325303684|tpg|DAA34353.1| (TPA_inf: dihydrolipoamide acetyltransferase [Amblyomma variegatum])

HSP 1 Score: 90.8929 bits (224), Expect = 1.250e-18
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 0
Query:   41 RTLRREHSTAFIPTHRRLSTADGSGDNGTQSHDPPHFKLILPDIGQTSKTGNLTRWRKAEGDVIKNGDVVCEVEMDQFNVGMEVDDKGYLARILVPAGTRGVPAGEALAVFVYEEQYKDAF 161
            R + +  S    P H      DG       +  P H ++ LP +  T + G +  W K EGD +  GD++CE+E D+  +G E  ++GYLA+IL+PAGT+ VP G+ L + VY+E    AF
Sbjct:   42 RLIAQSSSNLLKPRHH---FKDGQARRMYSADLPKHLRIQLPALSPTMEMGTIVSWEKKEGDRLGEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKDVPLGKLLCILVYDEGDVAAF 159          
The following BLAST results are available for this feature:
BLAST of EWM29544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112115|gb|EWM29544.1|0.000e+0100.00dihydrolipoamide s-acetyltransferase [Nannochlorop... [more]
gi|298704814|emb|CBJ48962.1|2.016e-2433.16conserved unknown protein [Ectocarpus siliculosus][more]
gi|813164224|ref|XP_012203172.1|3.858e-2033.83hypothetical protein SPRG_08540 [Saprolegnia paras... [more]
gi|698807226|ref|XP_009836642.1|9.190e-2034.39hypothetical protein H257_11423 [Aphanomyces astac... [more]
gi|669149544|ref|XP_008610334.1|1.535e-1933.33hypothetical protein SDRG_06335 [Saprolegnia dicli... [more]
gi|1173929459|gb|OQR82687.1|1.568e-1934.00hypothetical protein ACHHYP_15654 [Achlya hypogyna... [more]
gi|1214698378|gb|OWZ11413.1|3.933e-1930.60Dihydrolipoamide s-acetyltransferase [Phytophthora... [more]
gi|1173945129|gb|OQR93795.1|8.846e-1932.47hypothetical protein THRCLA_08344 [Thraustotheca c... [more]
gi|673031492|ref|XP_008869707.1|1.157e-1831.82hypothetical protein H310_06428 [Aphanomyces invad... [more]
gi|325303684|tpg|DAA34353.1|1.250e-1836.36TPA_inf: dihydrolipoamide acetyltransferase [Ambly... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1060rna1060Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications