|
|
Properties
| Property Name | Value |
|---|
| Product | growth hormone-regulated tbc protein 1 |
| Orig transcript id | gnl|cribi|Naga_100006g112.8600.mrna |
| Orig protein id | gnl|cribi|Naga_100006g112.8600 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1063146..1065245 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1056 ID=rna1056|Name=rna1056|organism=Nannochloropsis gaditana|type=mRNA|length=2247bp
ATGGGGCCTGGGAGAGACGAGATATGGAAAGGAACGGATGACGAGGGGCA
GGCCTCATGCCAGGCGAGGCGGGGTCCGCTGGCGTATGCCAAGGCCCCCC
CCGCGGAGTTGTATCGCGCCAAGGACGGGGGGAGGGAGGAGCTGCAGGAC
AAGGAGTCGTGTACAGGTGGGAAGGAGCAAGGCGTTGCGGAGAGGGGAAG
AGAGAGAGAAGCGGAGGAAGCGAGGGAGGAGGCGGCCATCAGCATGGAAT
CCTGCCTGACCTTCCTCTTGGAAGGGGCGGAGCAAGAAGCCTTTGTCGCC
GCGCGCCATTTCTTGGGCGATCACGGCGGTGTTCAAGGGAGGAAGGAGGG
AGCTCGAGACCGAAACGAGGAGATGGGCGAGTCCATGCTTGGTGGTGGGG
CCTTGGCAGCCTTGGCCGACGAGCGAATGGGCCGCAGGACCCGACCAGGC
GCCTTGTCTTCGCTATCCCCGGTCACCGGCCCCCTTGCCGGCGGCGGCGG
CAGCAAAATCGGAGGGAAAGGGAAGCATTACCAATTCACAGAGGAAGGCC
TCCAGGACGTGATTCTACGGCTGCTTCGAGACGAGATGCTCTCCGACGAG
GTCTTGAACCGAGCACTGGACATGATGGCGCACACGCCGGTGGCGGAGGC
GGCCGTCCTCTTGAACACCTTTTGGTACGAGAAGATCAAGGAGGGTAAGT
ACGTGGAGGCCAAGGCCTGGCTGGAACGTGCCCTTGGCGGCCGATCCAAG
GCCTCGCTCCGGTTGGTGTGCGTTCCCATCAATATCGCCAACGCCCACTG
GGTCCTCGTGTTCGCGGACCTGGTCAGGAACACCGTGCAGGAATGGGACC
CGGCCTCTGCCACGGGACCGCTGGATCCTAGCCGCCTTAAAAACGTGAAG
GATGCCCTGGAAAAATTTTTTGGATTCGAAAAATTGAAAAGACCGCCCCT
TGCTCTTGTCCCGGCCCCGGCCGGGCTACCCCAGCAACCGGATGCCGTCA
ATTGTGGCGTCTTTGTCGTCATATACCTGATTCAAATCTGCTTTGTCCGA
GAGTTTACTTTGATCTTGGATCCCAATGACTGGCCAGGCAGGGCGGTCCA
AGATGGCGGACAGGGCGGCGAGGGGGGGCAAGAGGGAGGGCAGACGCGCT
TAGGCGGGGGGCCTGTTGCGGATCCTCCTATCGCTGAGAGCGCCCGTCAG
CTCCGGGGTCAGGGGATAGCTACAAAGCTAGCGCTAGTGCCTCCTTGTAT
GCTTCGGGTATCGGAAAATGACCTGCTCCGATACAGGCTCTTCCTCCTTG
CCCTGATTTTGCACAGCCAGACCTCCCACCTATCCAGGACAGATCCAGTG
CTGCTTTCTTTCGTGTCGGAGAAACGGCGAGACTGGAGGATGGAGACGGA
TTCTCTGGGTGCGTTTCCTCCTACGTCAACGCCGCTGCGTTCTGAACATG
GTGTAGGAGGAAGAGGGCGGGGAGAAAGCGATAGGAAAGACATGGAGATG
CAGCGACATCTGTTGCTTTCCTTGGCCAGGGACAAGTCAAACGATGAAGC
CATGCAAAGCCTTTTCCTTCAGGCTGCTATGAGCTTGCTCAATCGGTTTT
CTTCGGACGGGCGTATCGTTTTTGTGAGTCCGTGCTGGTATGAAAGCTTG
GTCGCCGGGAATATCAGAAGATCGATAGCCATCATGGAAAAGCTGTCGTT
GGCGAATGTAGAGGTGTTGTGTCTGCCTATATATCATCCAGGAGCTGGTG
GGTGGATCCTTGCACGCGTCAGCCTTTTGGAAGAGATCAAATCCATATAT
CTACATGGCACACACGCCTTGGGAGAGGCCGAGCACATTTTCCCCTTTGT
TGAAAGGGGTTTACAAGCACTTCTCGAGGGACACCACAAATTACACTGGC
GACAATTAGCTCAGCCCTTGGAATTAGTGCCACATGCTCACCAGGTACCC
GTGGCTTTGGTCCTACTGTCTATGCACATTCTGCGGAAAGGACCTGATGC
TCGAGCTCCCTCAGGCGAACTTACTAATAATTGGGGAAGTAGCAGCATGC
CCGGTTTGCGATTCGATGACCAACACACATATTTTTCAGCCAAAGTTGGC
ATTCTCCGTTGGCTTCTGCGTCACACTTCACGTGCGTGAAAATCAAATAA
TAAAAAGCTTTGTAAACTTTCGCAGAGAACACAATGTCATGTATACATAG
GAGTAAAATTCCAAAAATGAAGAAAAGCGATGATCTTGGGCTTTTTG back to topprotein sequence of rna1056 >rna1056-protein ID=rna1056-protein|Name=rna1056|organism=Nannochloropsis gaditana|type=polypeptide|length=582bp
GDVQAQDRRCRRLSTSYGPCPGVQSPGDLKGLVWQGIPPDLRDPVYEWLS
GASCKREALGVNYYHTLAAASEEENLGLGVIGGEEGEEGEEAWVCVTRER
EDAGVGMGGTGVHGGEGLRWEGGAGSGTGGGYVGRRGAGGKGGMVVDVVM
PELDAAWGAKVAQDIELDLGRAFTDSDAAINTPEGRARLRRVLRAYALRN
PSVGYCQGMNFIAGLLLLAVSEETAFWTLAHVCEEVSPLCFSPPLLGTRA
DMRALGELLKAELPALYEHCSALYLNLEMMAGHWLLVYFINIFPPPVALR
ILEISMAEGSDVTFAVALAFLRGLEAELLACDDLHELSQLVRIRQAGMYD
ADALLHQTRVQLRRMRSNLRILRAWHLGDLMKHEDEMDRVLCRAPQQARW
RWRHRGAAGEGRQDEGNKSKGGDAPGRSHAGTTEADMRDGRSMNGWVYGS
NESDRENLAQQNEQKMRRLMRRSVTRGLSLIGLSYWVSPHTWRHWDQLAF
QVTHRLFLEEGRFRSMRFTPVLVDLVSWWMNWPILMRRTGGGDLPAPAPT
SPVRRSSLGPSVAGSPPRVASNRRHSSSPIKI back to topmRNA from alignment at CM002456.1:1063146..1065245+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1056 ID=rna1056|Name=rna1056|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002456.1:1063146..1065245+ (Nannochloropsis gaditana)
GGTGACGTCCAGGCACAGGACCGCCGGTGCAGACGCCTTAGCACGAGCTA
CGGCCCCTGCCCGGGGGTGCAGAGCCCGGGCGACCTGAAGGGTCTGGTGT
GGCAGGGCATCCCCCCTGACCTCAGAGACCCGGTCTACGAGTGGTTGAGC
GGCGCGTCCTGCAagcgggaggctttgggTGTGAACTACTATCACACGTT
AGCGGCCgccagcgaggaggagaacctAGGGCTGGGTGTGatcgggggag
aggagggggaggagggggaggaggcctgggtgTGTGTGAcgcgggagcgg
gaggacgctggggtggggatgggcggcACCGGCGTgcacggaggagaagg
cctcAGGTGGGAAGGTGGGGCCGGTTCAGGCACGGGTGGGGGCTATgtag
gaaggcggggggcggggggtaagggagggatggtggtggatgtGGTCATG
CCGGAGCTGGATGCGGCGTGGGGCGCCAAGGTAGCGCAAGACATCGAGCT
GGATTTGGGGAGGGCCTTCACGGATTCGGATGCCGCCATCAACACgcctg
aggggagggcaaggctcCGCCGGGTCCTGCGGGCTTACGCACTTCGAAAC
CCCTCGGTGGGCTACTGCCAGGGTATGAATTTCATCGCAGGCCTCCTTTT
GCTGGCGGTGAGCGAGGAGACGGCGTTCTGGACCCTGGCGCACGTTTGTG
AAGAGGTCAGTCCCCTTTgcttctccccacccctgCTGGGGACGCGGGCC
GACATGCGGGCCTTGGGGGAGTTGCTGAAAGCGGAGCTTCCGGCCCTGTA
CGAGCACTGCAGCGCGCTCTACCTGAATTTGGAAATGATGGCCGGGCACT
GGCTCCTGGTCTATTTCATCAacatctttcctcccccggtgGCCCTGCGC
ATCCTGGAGATTTCCATGGCTGAAGGCTCGGACGTGACCTTCGCCGTCGC
CCTGGCGTTCTTGCGGGGATTGGAGGCGGAGCTCTTGGCCTGCGACGATT
TGCACGAGCTCTCACAATTGGTCCGAATCAGACAGGCAGGCATGTACGAC
GCGGATGCCCTGCTGCACCAAACCCGCGTGCAACTCAGACGCATGCGTTC
CAATCTGAGAATTTTGCGCGCCTGGCACTTGGGGGATTTGATGAAGCACG
AAGACGAGATGGACCGGGTGCTTTGTCGGGCGCCGCAGCAAGCAcgttgg
cggtggcggcatCGCGGGGCagcaggcgaagggaggcaggacgaGGGAAA
CAAAAGTAAAGGGGGAGATGCGCCAGGCCGATCGCACGCGGGCACCACCG
AGGCGGACATGAGAGATGGGAGAAGCATGAACGGATGGGTATACGGGAGT
AATGAGAGCGACAGGGAGAACTTGGCACAGCAGAATGAGCAAAAAATGCG
GCGATTGATGCGACGATCTGTCACTCGCGGTCTCTCTCTGATCGGTCTTT
CCTACTGGGTGAGTCCGCACACCTGGCGGCATTGGGACCAACTGGCTTTC
CAAGTGACGCACCGCTTATTTCTGGAAGAGGGGCGTTTCCGCTCCATGCG
CTTCACCCCCGTGCTGGTCGATTTGGTGTCCTGGTGGATGAATTGGCCGA
TCCTGATGCGTCGAACGGGAGGCGGCGACCTGCCTGCGCCCGCCCCGACG
TCTCCTGTTCGGCGATCTAGTCTGGGGCCGTCCGTTGCTGGGAGCCCCCC
GCGGGTTGCTTCCAACCGTCGGCACAGCAGCAGTCCAATCAAAATCTAAG
GTGAGCTATACGTTTCTCATCCTCACGTTGAAAATGTTGAACGGTTTACT
GAAGCATCACATCCCGAAATATGCAATGTCGAAAGGATGTGGTGTAATCG
GCCGGATCATAAGATTTGTACAAAGACTACACAGCACGCGATCAATTTCA
AATTGTCATGTGGATCGAACCAGCGAACAGTATTGATGCCTGTAAAGAAA
GAAGTGACTTTTTCCCCGGCGGAATGATATCACAACAGACATGTATGTTG
TCAGTGCTAGAGGACTTCGTGATATTGTATTGGATGTTAATTTTGCTCTA
TTCAAGCTATTTGCCACGATAATTGACAATCATTTTCAATTCCGCCGAAG
back to topCoding sequence (CDS) from alignment at CM002456.1:1063146..1065245+ >rna1056 ID=rna1056|Name=rna1056|organism=Nannochloropsis gaditana|type=CDS|length=1749bp|location=Sequence derived from alignment at CM002456.1:1063146..1065245+ (Nannochloropsis gaditana)
GGTGACGTCCAGGCACAGGACCGCCGGTGCAGACGCCTTAGCACGAGCTA
CGGCCCCTGCCCGGGGGTGCAGAGCCCGGGCGACCTGAAGGGTCTGGTGT
GGCAGGGCATCCCCCCTGACCTCAGAGACCCGGTCTACGAGTGGTTGAGC
GGCGCGTCCTGCAagcgggaggctttgggTGTGAACTACTATCACACGTT
AGCGGCCgccagcgaggaggagaacctAGGGCTGGGTGTGatcgggggag
aggagggggaggagggggaggaggcctgggtgTGTGTGAcgcgggagcgg
gaggacgctggggtggggatgggcggcACCGGCGTgcacggaggagaagg
cctcAGGTGGGAAGGTGGGGCCGGTTCAGGCACGGGTGGGGGCTATgtag
gaaggcggggggcggggggtaagggagggatggtggtggatgtGGTCATG
CCGGAGCTGGATGCGGCGTGGGGCGCCAAGGTAGCGCAAGACATCGAGCT
GGATTTGGGGAGGGCCTTCACGGATTCGGATGCCGCCATCAACACgcctg
aggggagggcaaggctcCGCCGGGTCCTGCGGGCTTACGCACTTCGAAAC
CCCTCGGTGGGCTACTGCCAGGGTATGAATTTCATCGCAGGCCTCCTTTT
GCTGGCGGTGAGCGAGGAGACGGCGTTCTGGACCCTGGCGCACGTTTGTG
AAGAGGTCAGTCCCCTTTgcttctccccacccctgCTGGGGACGCGGGCC
GACATGCGGGCCTTGGGGGAGTTGCTGAAAGCGGAGCTTCCGGCCCTGTA
CGAGCACTGCAGCGCGCTCTACCTGAATTTGGAAATGATGGCCGGGCACT
GGCTCCTGGTCTATTTCATCAacatctttcctcccccggtgGCCCTGCGC
ATCCTGGAGATTTCCATGGCTGAAGGCTCGGACGTGACCTTCGCCGTCGC
CCTGGCGTTCTTGCGGGGATTGGAGGCGGAGCTCTTGGCCTGCGACGATT
TGCACGAGCTCTCACAATTGGTCCGAATCAGACAGGCAGGCATGTACGAC
GCGGATGCCCTGCTGCACCAAACCCGCGTGCAACTCAGACGCATGCGTTC
CAATCTGAGAATTTTGCGCGCCTGGCACTTGGGGGATTTGATGAAGCACG
AAGACGAGATGGACCGGGTGCTTTGTCGGGCGCCGCAGCAAGCAcgttgg
cggtggcggcatCGCGGGGCagcaggcgaagggaggcaggacgaGGGAAA
CAAAAGTAAAGGGGGAGATGCGCCAGGCCGATCGCACGCGGGCACCACCG
AGGCGGACATGAGAGATGGGAGAAGCATGAACGGATGGGTATACGGGAGT
AATGAGAGCGACAGGGAGAACTTGGCACAGCAGAATGAGCAAAAAATGCG
GCGATTGATGCGACGATCTGTCACTCGCGGTCTCTCTCTGATCGGTCTTT
CCTACTGGGTGAGTCCGCACACCTGGCGGCATTGGGACCAACTGGCTTTC
CAAGTGACGCACCGCTTATTTCTGGAAGAGGGGCGTTTCCGCTCCATGCG
CTTCACCCCCGTGCTGGTCGATTTGGTGTCCTGGTGGATGAATTGGCCGA
TCCTGATGCGTCGAACGGGAGGCGGCGACCTGCCTGCGCCCGCCCCGACG
TCTCCTGTTCGGCGATCTAGTCTGGGGCCGTCCGTTGCTGGGAGCCCCCC
GCGGGTTGCTTCCAACCGTCGGCACAGCAGCAGTCCAATCAAAATCTAA back to top
|