rna105, rna105 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna105
Unique Name	rna105
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1821
Alignment location	CM002455.1:285429..286168 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF1754, eukaryotic
Orig transcript id	gnl\|cribi\|Naga_100033g29.8394.mrna
Orig protein id	gnl\|cribi\|Naga_100033g29.8394
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:285429..286168 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g29	gene102	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna105	rna105-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30555.1	cds105	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:285429..286168-
coding sequence from alignment at CM002455.1:285429..286168-

mRNA sequence

>rna105 ID=rna105|Name=rna105|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp
CCGCATCACTTGCCTTGCGGCGACGACCTTCTCTGTAGCCTCAGTACCAC
ATGGCAAAAGAACTGTGGACTTTAACCCTGTCATTTTCCCTTCTCTCGAC
GCGCACACACTCGCATACCCATCCCCTTCAATCATATACTCGTTGATAGC
ATTCCGTGGGCACCTTCTGTTTCCTCGTACACCATCGTGGCACCTTGGCG
AAGGCCCATTTGAAGCCTCTTTCTGGAGCACGCCGTCTCTTGAGCCAAAC
CCGCATCGATATAAAGGCATGTTCTCCCTCTGCATCTCCATTCTGCTATT
CTGTTCCCTATCCCGCACCGTGGAAGCGCGCGGGTGTCAAGTCAGAAACC
ATGCCGGGCGGCCCGTTGACTTCTATTGGATGGACGTTGTGAACTGGGGG
ACCTACATTACTCAAACTCCCGTGCCCATGCCGAATGAGACATCCTTTGC
CCTTAAAACATACGAGTCACATCGATTTTTCGTCGCCTGGGGGGATGAAG
CTGGCGAAGTGCAATCGTGGGACCCGAACAGCATTCCTTTGAACGCCCAG
TTTGTTCACCGTGGGTACGATCAAGTCGTCACGGCGTTGGTAGATAAAAA
TGGGCAGCTTTATCTTCAGGACTGGGACGTTCATGAATGGGGCATGGACC
GCCTTGTTCAGGCCATTGAGCAGTGCAATCTGACCACGTCTGGAAATGTG
GAAAAGGAAGATGCACAGGCCCGCTGTGTCATGAAGCAAGCAAACACAAT
CATTTCCCGGTTTAAGCGGGAGCGAGACAGTATCAAGGCCCAGGTCGACA
AGATGCAGACACGCATGGCAGGATCCTTTTGCACCGGGACGGGGCGATTT
CAAACCCCTGCTAGGCGTACCTTTGAATGGGAGGGACGACAAGTGAACGT
CTTGGCCGATACAGGCAACGTAAGCGTCTTCCACCTGCCCGCGTTCCTCG
ACGTTTCGGGGACCACCAACTTGATAACGGGTGCCCCGCCCAACGGCACC
CGGTACCTGGAGGTCTTCCCGAACCCCAAGATGAAGTTTGACGCCTCCCT
AGTGGAGGCCCAGGCCTGGGGTCGCGCGTTTGTTCAGTCTCAATTGGGAG
GGAGCATGCAGGATAAGACAAGCGACAAGGAGCCATTGCGCATCTTTCGC
TACGACAAGAAGGAGTTTCATGCTCCCCCTTGTGATGGCATCTGCCAGAA
ATTGCTCCTGCCCTCGGCTGAGTACGCCGCTACCCTCATCATGTACCCCC
AGCACTCCAAACAGGCCGACCGCGACCGCACGGCCTGGTATTTTACCACT
GAGGACGCAAATACCGATATCGGGTTTACCTCGCAAGGCAACGACGCCGT
TCTCTTCCTTTACAAGAACCCAACCGTCGGCTATGCCCCTGCTTTGCTTC
CCCAGCTGATTCCATGCATATCCATGTCCAAAGAGATGTTTGTATCCTCT
ACGTGGATCCGTCGACCGGTCGATGAGAAGGAGAAGCGAGCAGAAGGTAG
TTCCAACTCCAGGGTGGAAGACGAACTTTAGGAGAGCAAGAAGATGGCCA
CGGGCTCCTCCTGCTTGGTCGCATTAGGCGGGAAAAATCCAAGAAGAAGC
GGATAGAAAGCAATGGGCCAGGCGCATGGGCGCTCATTCGAATGCATCTC
ACTTCACTTTTTGCAAAGGAAAAGGTGTCGCACGTATTTCTTTCTTTAAG
CTCGTTTGTTCCATGTTAATGTGAGGGCAAACCCACCACAAGCTTATCCA
TTTCCTGCCGCGGACACTCGCGGAATATCATTGTGCTCCGTGAGCACCGA
CAAGTACTGATTGAACTCATC

protein sequence of rna105

>rna105-protein ID=rna105-protein|Name=rna105|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESI
SDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQ
YLSVLTEHNDIPRVSAAGNG

mRNA from alignment at CM002455.1:285429..286168-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna105 ID=rna105|Name=rna105|organism=Nannochloropsis gaditana|type=mRNA|length=740bp|location=Sequence derived from alignment at CM002455.1:285429..286168- (Nannochloropsis gaditana)
CCCGTTCTCGGTTCGAGATAGTGCCCCGTGATTGTCACCGGAAATGTCAC
AATAAGACCCGTGTTGACACGTTACACACCCACCTTGCACGACTCTACAG
CATTCTCATGCCTGTCGGCGGAGCGCTGAAGCTGAAAGGGCTTCCTACAA
AAGACAAGTACGTACATGGCCGCTCCCTAGTGGGAGACCCTTGCAGATTT
GGACGCACCTGATTCGGGCATTGATGCTTCGAAAATAAACGATGAAGTTG
TAGGTGGTTGGTGTATGGATGTGATATAATGTTACGCTTTGTCTACATTC
CGGTCCATGTTTTTGGATACTTATTCAGTTCTTTCTGCGTATTTGTAGGA
AGAAGAAGAAGCGTCAGCGCGACGAGCGCTCGCACCACGAGGGAGACGCC
GTCCTTACCCATGAGAAGCAAGAGGAAAGGGGGGGAAATGAAAGCATTTC
AGATACCTCGTCTTTCCCCTCTGAAAAGGACGATGGTTTGACGGAAACCC
AACGACGTCACATTGCCAAGTTGAAGGAACGTGAGCGGCAGAATATCAAG
AAACTGGTAAGTAAGAGCCACCGAGAGCGCATCGATGAGTTCAATCAGTA
CTTGTCGGTGCTCACGGAGCACAATGATATTCCGCGAGTGTCCGCGGCAG
GAAATGGATAAGCTTGTGGTGGGTTTGCCCTCACATTAACATGGAACAAA
CGAGCTTAAAGAAAGAAATACGTGCGACACCTTTTCCTTT

Coding sequence (CDS) from alignment at CM002455.1:285429..286168-

>rna105 ID=rna105|Name=rna105|organism=Nannochloropsis gaditana|type=CDS|length=726bp|location=Sequence derived from alignment at CM002455.1:285429..286168- (Nannochloropsis gaditana)
GAAGAAGAAGAAGCGTCAGCGCGACGAGCGCTCGCACCACGAGGGAGACG
CCGTCCTTACCCATGAGAAGCAAGAGGAAAGGGGGGGAAATGAAAGCATT
TCAGATACCTCGTCTTTCCCCTCTGAAAAGGACGATGGTTTGACGGAAAC
CCAACGACGTCACATTGCCAAGTTGAAGGAACGTGAGCGGCAGAATATCA
AGAAACTGGTAAGTAAGAGCCACCGAGAGCGCATCGATGAGTTCAATCAG
TACTTGTCGGTGCTCACGGAGCACAATGATATTCCGCGAGTGTCCGCGGC
AGGAAATGGATAAATGCCTGTCGGCGGAGCGCTGAAGCTGAAAGGGCTTC
CTACAAAAGACAAGAAGAAGAAGAAGCGTCAGCGCGACGAGCGCTCGCAC
CACGAGGGAGACGCCGTCCTTACCCATGAGAAGCAAGAGGAAAGGGGGGG
AAATGAAAGCATTTCAGATACCTCGTCTTTCCCCTCTGAAAAGGACGATG
GTTTGACGGAAACCCAACGACGTCACATTGCCAAGTTGAAGGAACGTGAG
CGGCAGAATATCAAGAAACTGGTAAGTAAGAGCCACCGAGAGCGCATCGA
TGAGTTCAATCAGTACTTGTCGGTGCTCACGGAGCACAATGATATTCCGC
GAGTGTCCGCGGCAGGAAATGGATAAATGCCTGTCGGCGGAGCGCTGAAG
CTGAAAGGGCTTCCTACAAAAGACAA

Synonyms

Publications