EWM30555.1, cds105 (CDS) Nannochloropsis gaditana

Overview
NameEWM30555.1
Unique Namecds105
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:286012..286061 -
Alignment locationCM002455.1:285508..285820 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30555.1
ProductProtein of unknown function DUF1754, eukaryotic
Orig transcript idgnl|cribi|Naga_100033g29.8394.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:286012..286061 -
CM002455.1supercontigCM002455.1:285508..285820 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013865DUF1754_euk
Homology
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|585113222|gb|EWM30555.1| (Protein of unknown function DUF1754, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 243.432 bits (620), Expect = 1.563e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG
Sbjct:    1 MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|675166417|ref|XP_008892093.1| (hypothetical protein PPTG_02646 [Phytophthora parasitica INRA-310] >gi|566026857|gb|ETI49768.1| hypothetical protein F443_06544 [Phytophthora parasitica P1569] >gi|567964041|gb|ETK89532.1| hypothetical protein L915_06413 [Phytophthora parasitica] >gi|567992743|gb|ETL42933.1| hypothetical protein L916_06359 [Phytophthora parasitica] >gi|568022029|gb|ETL96109.1| hypothetical protein L917_06227 [Phytophthora parasitica] >gi|568052387|gb|ETM49263.1| hypothetical protein L914_06340 [Phytophthora parasitica] >gi|568108249|gb|ETN22873.1| hypothetical protein PPTG_02646 [Phytophthora parasitica INRA-310] >gi|570330443|gb|ETO78391.1| hypothetical protein F444_06610 [Phytophthora parasitica P1976] >gi|570954148|gb|ETP19405.1| hypothetical protein F441_06549 [Phytophthora parasitica CJ01A1] >gi|970634961|gb|KUF79995.1| FAM32A protein [Phytophthora nicotianae] >gi|970660939|gb|KUF98451.1| FAD synthase [Phytophthora nicotianae])

HSP 1 Score: 77.411 bits (189), Expect = 4.001e-16
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0
Query:   62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            D +T  QRRH    K+RE++ I+KL SK++RERI+E NQ+L  LTEH+D+PRVSAAGNG
Sbjct:   54 DDMTPAQRRHAEHQKKREQEEIEKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|570989047|gb|ETP47324.1| (hypothetical protein F442_06588 [Phytophthora parasitica P10297])

HSP 1 Score: 77.411 bits (189), Expect = 4.467e-16
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0
Query:   62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            D +T  QRRH    K+RE++ I+KL SK++RERI+E NQ+L  LTEH+D+PRVSAAGNG
Sbjct:   57 DDMTPAQRRHAEHQKKREQEEIEKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 115          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|953502324|emb|CEG36510.1| (Conserved alpha-helical protein [Plasmopara halstedii])

HSP 1 Score: 75.8702 bits (185), Expect = 1.604e-15
Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0
Query:   62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            D +T  QRRH    K+RE++ I+K+ SK++RERI+E NQ+L  LTEH+D+PRVSAAGNG
Sbjct:   54 DDMTPAQRRHAEHKKKREQEEIEKMASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|813162707|ref|XP_012202653.1| (hypothetical protein SPRG_07911 [Saprolegnia parasitica CBS 223.65] >gi|641532483|gb|KDO26508.1| hypothetical protein SPRG_07911 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 74.3294 bits (181), Expect = 8.972e-15
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 0
Query:    3 VGG--ALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            +GG  +LK KG+P K KK KK ++  R H +GD      K+          D    P     G+T+ Q++H     +RE ++I+K  SK++RER++E++ YL  LTEH+D+PRVSAAGNG
Sbjct:    8 MGGKLSLKAKGIPVKAKKTKKAKKTSRKHEDGDDGEVAAKKTTSKKVRVDDDVVLVPM---GGMTDAQKKHAKFKSKREEEDIRKQASKTYRERVEEYSTYLGNLTEHHDVPRVSAAGNG 124          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|702298263|ref|XP_010048460.1| (PREDICTED: protein FAM32A isoform X1 [Eucalyptus grandis] >gi|629116032|gb|KCW80707.1| hypothetical protein EUGRSUZ_C02104 [Eucalyptus grandis])

HSP 1 Score: 74.7146 bits (182), Expect = 1.146e-14
Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 0
Query:    3 VGGALKLKGLPTKDK-------------------KKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRV 114
            V G LKLKG P   K                     +  +R   S   G+ +L++    ER  +E   D  S PS  DD LT  +RR + + ++ E + + K+ SKSHR+R+ EFNQYL+ L+EH DIP+V
Sbjct:   11 VAGKLKLKGKPLDVKLNGSWTISKKKTKNKKDKDAGRLPRRFPESAAGGNTLLSYADDAERVNDEGRDDGRSLPSVYDDHLTPAERRFLQQREKIELERLAKMASKSHRDRVQEFNQYLANLSEHYDIPKV 141          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|219112621|ref|XP_002178062.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410947|gb|EEC50876.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 73.1738 bits (178), Expect = 1.558e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query:   61 DDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            D+ LT  +++   K  ERERQ++K +  KSHRER++EFN+ L   TEHNDIPRVSAAGNG
Sbjct:   44 DEELTNAEKKAEEKRIERERQDLKNIAKKSHRERVEEFNERLGSQTEHNDIPRVSAAGNG 103          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|301114717|ref|XP_002999128.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111222|gb|EEY69274.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 73.559 bits (179), Expect = 1.703e-14
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0
Query:   62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            D +T  QRRH    K+RE + I+KL SK++RERI+E NQ+L  LTEH+D+PRVSAAGNG
Sbjct:   55 DDMTPAQRRHAEHQKKRE-EEIEKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|1035897981|gb|OAY27583.1| (hypothetical protein MANES_16G136700 [Manihot esculenta])

HSP 1 Score: 73.559 bits (179), Expect = 2.020e-14
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query:    3 VGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESIS-------------DTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRV 114
            VGG L+LKG P   K     ++ ++ HH  D       Q + GGN S S             D +   ++ DD LT  +RR++ + +  + Q I K+ SKSHR+RI EFNQYL+ L+EH DIP+V
Sbjct:    8 VGGRLRLKGKPLDVKTGGISKKKKKQHHYHD-------QRQPGGNNSSSTEHGEETNETDKDDENGEAAKYDDYLTPAERRYLQQWENIDLQRISKVASKSHRDRIQEFNQYLANLSEHYDIPKV 125          
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|673053003|ref|XP_008880462.1| (hypothetical protein H310_14388 [Aphanomyces invadans] >gi|574463840|gb|ETV90897.1| hypothetical protein H310_14388 [Aphanomyces invadans])

HSP 1 Score: 73.1738 bits (178), Expect = 2.025e-14
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 0
Query:    3 VGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
            +GG L LKG P K+ KK K++R      +GD   + +KQ+    +E +   +        G+T  Q++H+    +RE ++IKK  SK++RER+DE+++YL  L+EH+D+PRVSAAGNG
Sbjct:   10 MGGKLSLKGKPLKESKKSKKKRKREHGDDGDRGDSTKKQD----SEVVVPIT--------GMTAAQQKHLKFKAKREEEDIKKQASKTYRERVDEYSKYLGNLSEHHDVPRVSAAGNG 115          
The following BLAST results are available for this feature:
BLAST of EWM30555.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113222|gb|EWM30555.1|1.563e-81100.00Protein of unknown function DUF1754, eukaryotic [N... [more]
gi|675166417|ref|XP_008892093.1|4.001e-1661.02hypothetical protein PPTG_02646 [Phytophthora para... [more]
gi|570989047|gb|ETP47324.1|4.467e-1661.02hypothetical protein F442_06588 [Phytophthora para... [more]
gi|953502324|emb|CEG36510.1|1.604e-1559.32Conserved alpha-helical protein [Plasmopara halste... [more]
gi|813162707|ref|XP_012202653.1|8.972e-1540.83hypothetical protein SPRG_07911 [Saprolegnia paras... [more]
gi|702298263|ref|XP_010048460.1|1.146e-1435.88PREDICTED: protein FAM32A isoform X1 [Eucalyptus g... [more]
gi|219112621|ref|XP_002178062.1|1.558e-1458.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|301114717|ref|XP_002999128.1|1.703e-1461.02conserved hypothetical protein [Phytophthora infes... [more]
gi|1035897981|gb|OAY27583.1|2.020e-1438.40hypothetical protein MANES_16G136700 [Manihot escu... [more]
gi|673053003|ref|XP_008880462.1|2.025e-1440.68hypothetical protein H310_14388 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna105rna105Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications