EWM30555.1, cds105 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|585113222|gb|EWM30555.1| (Protein of unknown function DUF1754, eukaryotic [Nannochloropsis gaditana]) HSP 1 Score: 243.432 bits (620), Expect = 1.563e-81 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG
Sbjct: 1 MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|675166417|ref|XP_008892093.1| (hypothetical protein PPTG_02646 [Phytophthora parasitica INRA-310] >gi|566026857|gb|ETI49768.1| hypothetical protein F443_06544 [Phytophthora parasitica P1569] >gi|567964041|gb|ETK89532.1| hypothetical protein L915_06413 [Phytophthora parasitica] >gi|567992743|gb|ETL42933.1| hypothetical protein L916_06359 [Phytophthora parasitica] >gi|568022029|gb|ETL96109.1| hypothetical protein L917_06227 [Phytophthora parasitica] >gi|568052387|gb|ETM49263.1| hypothetical protein L914_06340 [Phytophthora parasitica] >gi|568108249|gb|ETN22873.1| hypothetical protein PPTG_02646 [Phytophthora parasitica INRA-310] >gi|570330443|gb|ETO78391.1| hypothetical protein F444_06610 [Phytophthora parasitica P1976] >gi|570954148|gb|ETP19405.1| hypothetical protein F441_06549 [Phytophthora parasitica CJ01A1] >gi|970634961|gb|KUF79995.1| FAM32A protein [Phytophthora nicotianae] >gi|970660939|gb|KUF98451.1| FAD synthase [Phytophthora nicotianae]) HSP 1 Score: 77.411 bits (189), Expect = 4.001e-16 Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
D +T QRRH K+RE++ I+KL SK++RERI+E NQ+L LTEH+D+PRVSAAGNG
Sbjct: 54 DDMTPAQRRHAEHQKKREQEEIEKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|570989047|gb|ETP47324.1| (hypothetical protein F442_06588 [Phytophthora parasitica P10297]) HSP 1 Score: 77.411 bits (189), Expect = 4.467e-16 Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
D +T QRRH K+RE++ I+KL SK++RERI+E NQ+L LTEH+D+PRVSAAGNG
Sbjct: 57 DDMTPAQRRHAEHQKKREQEEIEKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 115
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|953502324|emb|CEG36510.1| (Conserved alpha-helical protein [Plasmopara halstedii]) HSP 1 Score: 75.8702 bits (185), Expect = 1.604e-15 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 0
Query: 62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
D +T QRRH K+RE++ I+K+ SK++RERI+E NQ+L LTEH+D+PRVSAAGNG
Sbjct: 54 DDMTPAQRRHAEHKKKREQEEIEKMASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|813162707|ref|XP_012202653.1| (hypothetical protein SPRG_07911 [Saprolegnia parasitica CBS 223.65] >gi|641532483|gb|KDO26508.1| hypothetical protein SPRG_07911 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 74.3294 bits (181), Expect = 8.972e-15 Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 0
Query: 3 VGG--ALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
+GG +LK KG+P K KK KK ++ R H +GD K+ D P G+T+ Q++H +RE ++I+K SK++RER++E++ YL LTEH+D+PRVSAAGNG
Sbjct: 8 MGGKLSLKAKGIPVKAKKTKKAKKTSRKHEDGDDGEVAAKKTTSKKVRVDDDVVLVPM---GGMTDAQKKHAKFKSKREEEDIRKQASKTYRERVEEYSTYLGNLTEHHDVPRVSAAGNG 124
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|702298263|ref|XP_010048460.1| (PREDICTED: protein FAM32A isoform X1 [Eucalyptus grandis] >gi|629116032|gb|KCW80707.1| hypothetical protein EUGRSUZ_C02104 [Eucalyptus grandis]) HSP 1 Score: 74.7146 bits (182), Expect = 1.146e-14 Identity = 47/131 (35.88%), Postives = 67/131 (51.15%), Query Frame = 0
Query: 3 VGGALKLKGLPTKDK-------------------KKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRV 114
V G LKLKG P K + +R S G+ +L++ ER +E D S PS DD LT +RR + + ++ E + + K+ SKSHR+R+ EFNQYL+ L+EH DIP+V
Sbjct: 11 VAGKLKLKGKPLDVKLNGSWTISKKKTKNKKDKDAGRLPRRFPESAAGGNTLLSYADDAERVNDEGRDDGRSLPSVYDDHLTPAERRFLQQREKIELERLAKMASKSHRDRVQEFNQYLANLSEHYDIPKV 141
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|219112621|ref|XP_002178062.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410947|gb|EEC50876.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 73.1738 bits (178), Expect = 1.558e-14 Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query: 61 DDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
D+ LT +++ K ERERQ++K + KSHRER++EFN+ L TEHNDIPRVSAAGNG
Sbjct: 44 DEELTNAEKKAEEKRIERERQDLKNIAKKSHRERVEEFNERLGSQTEHNDIPRVSAAGNG 103
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|301114717|ref|XP_002999128.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111222|gb|EEY69274.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 73.559 bits (179), Expect = 1.703e-14 Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0
Query: 62 DGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
D +T QRRH K+RE + I+KL SK++RERI+E NQ+L LTEH+D+PRVSAAGNG
Sbjct: 55 DDMTPAQRRHAEHQKKRE-EEIEKLASKTYRERIEELNQHLGSLTEHHDVPRVSAAGNG 112
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|1035897981|gb|OAY27583.1| (hypothetical protein MANES_16G136700 [Manihot esculenta]) HSP 1 Score: 73.559 bits (179), Expect = 2.020e-14 Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 0
Query: 3 VGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESIS-------------DTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRV 114
VGG L+LKG P K ++ ++ HH D Q + GGN S S D + ++ DD LT +RR++ + + + Q I K+ SKSHR+RI EFNQYL+ L+EH DIP+V
Sbjct: 8 VGGRLRLKGKPLDVKTGGISKKKKKQHHYHD-------QRQPGGNNSSSTEHGEETNETDKDDENGEAAKYDDYLTPAERRYLQQWENIDLQRISKVASKSHRDRIQEFNQYLANLSEHYDIPKV 125
BLAST of EWM30555.1 vs. NCBI_GenBank
Match: gi|673053003|ref|XP_008880462.1| (hypothetical protein H310_14388 [Aphanomyces invadans] >gi|574463840|gb|ETV90897.1| hypothetical protein H310_14388 [Aphanomyces invadans]) HSP 1 Score: 73.1738 bits (178), Expect = 2.025e-14 Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = 0
Query: 3 VGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVLTHEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
+GG L LKG P K+ KK K++R +GD + +KQ+ +E + + G+T Q++H+ +RE ++IKK SK++RER+DE+++YL L+EH+D+PRVSAAGNG
Sbjct: 10 MGGKLSLKGKPLKESKKSKKKRKREHGDDGDRGDSTKKQD----SEVVVPIT--------GMTAAQQKHLKFKAKREEEDIKKQASKTYRERVDEYSKYLGNLSEHHDVPRVSAAGNG 115 The following BLAST results are available for this feature:
BLAST of EWM30555.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|