rna1048, rna1048 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1048
Unique Name	rna1048
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1110
Alignment location	CM002456.1:1041938..1044130 -

Link to JBrowse

Properties


Property Name	Value
Product	Endonuclease/exonuclease/phosphatase
Orig transcript id	gnl\|cribi\|Naga_100050g9.6859.mrna
Orig protein id	gnl\|cribi\|Naga_100050g9.6859
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1041938..1044130 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g9	gene1009	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1048	rna1048-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29636.1	cds1047	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1041938..1044130-
coding sequence from alignment at CM002456.1:1041938..1044130-

mRNA sequence

>rna1048 ID=rna1048|Name=rna1048|organism=Nannochloropsis gaditana|type=mRNA|length=1110bp
ACATGGGCCGCCCTCCCGAGAGCGGACGAGAAACAGCGAAAATAGCTATC
GCCTCTCACAGACCTCTCCATTAAGAGTGGTCTCAAGAACGAAAGTCTCG
ACGACCATTCTATGCACTGGGCAACTAGTTTATGTTCATATTAAGAGGGG
AAGAAGACGCGTGTCGTTTGTCCCAGGAGCACGCGTTTATGCGGTGTTCT
TCGCCTACTGCCCTCCCCATCCCCACGGAGACCTGGCACTCCCCTCAACC
TCTTCCTGCTAACTAGCAGGTTAATGTCACTGGCTCATTCACAAAGCCAT
AGATACGAAGGTTGAAAAGAAGCGGAGGATTTCTTATTACCTGGGTGCAT
GCTCTTTTTGCCGGCGACACTTACGAAATCATGCTCACGAGACTAGATTC
TTCTTCACTCCACCACAGACACGCGGAAGCGACTTGAGAGATTATGGCAG
AGGAGGACGGAAAGCTCGTGGGGGTTATTGGGGATGAGGACACGGTTACA
GGCTTCTTGCTAGCAGGCGTTGGTCACCGTACGATGGAGGGAGCGAATTT
CTTGGTTGTCAAAAATGATACACCCCTTTCCTTGGTGGAAGAGACCTTCA
ACAGATTGACAGAGCGGGATGATATTGGCATCGTGCTTATCAACCAACAT
ATCGCGAACGACATCCGCCACGTCATCAAGAACTACACTCAGACCATCCC
CACCGTCCTAGAGATCCCGTCCAAAGACCATCCGTACGATCCGGAGGCGG
ACTCCATTATGCAACGCGTCAACCTCATGACCGGGGGCCAAATGTGATGC
CTTGGCTTGGCGTCCATGATCAAGAGGGGGGCGGATGGCGGAAACGGACA
GGGAAACAGGAGGGGTTCTGTGTACAGGCATGTGAGCACGTGTAGGCGTC
GAGCCAGGATCAACAAGGGTGCTTGAAGCTTTGGGTCGCATTGGTCGCAA
ACAATGGCCAGCCCGCGCTAGAGATGCAGCGCGTGTGGTAAATGCCAACG
CAAATGGTATCGTAGAAATGGATGTGCGAGAGGCGCGAACAGGGATTGAG
AGCCCAACAATAAGCCGTAGCCATCGAAAAAGAAAAATATGAAAGAACCG
GCGAGACTTT

protein sequence of rna1048

>rna1048-protein ID=rna1048-protein|Name=rna1048|organism=Nannochloropsis gaditana|type=polypeptide|length=653bp
MSGTTASSNSLAGTGGLGPWMLNVRLDRPVEGCLISPHAYLYQKGEKGQQ
RDKERFNYRYRWLRGPERPVCANTACPRAQSFNPIQWSKFARKGCSFLIQ
CVVCAKLRLPRHHSVFCTLQCFQDAWKNHKRIHQMGRTRSANSGADGVPD
ASTDPLQDGEEETPPPPPLDYLTADTSEDDWQEVGSERTYCPQLSDIGRC
LKLEIRVLNPDGSLFFGPRLTETEPVLSAPPPPPQRPLMQVKNLAAAAAG
LKFRIATYNILAEIYATQTMYPYCDHWTLNWNYRKVNLLREMREVAADVL
FLQEVQADHYEQDILPELSEEGYDGLYKHKTRESMGASGKVDGCAILWRR
GKFRLAEKYLMEFNDCARRQASELGLSHDQKHTFLTRVLKDNVAQAVVLE
VLGRPRGGRHGGSMVCMANTHLYSHPEFPDVKLWQCHQLLQWLEGLTLPS
NMPLVLCGDFNSEPSSAVYELVSAQVVGADHPDMQLLQQQASASSTEATE
LVRSVLLSEQHHQVAHSLLLKSAYATLLGEEPRFTNYTVGYVGVLDYIWF
SGMHWRPLTVAPIPAEQDLACTGEALPNALYPSDHLMLFSDLQFVVGGGG
GGGGGGGLGGGLMGELRKAMPGLGGGLGGYMTPTKQQQQQLTSSPSLTRK
GVR

mRNA from alignment at CM002456.1:1041938..1044130-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1048 ID=rna1048|Name=rna1048|organism=Nannochloropsis gaditana|type=mRNA|length=2193bp|location=Sequence derived from alignment at CM002456.1:1041938..1044130- (Nannochloropsis gaditana)
ATGTCTGGCACAACCGCTAGCAGCAACAGCCTTGCGGGAACAGGAGGCCT
GGGGCCCTGGATGCTAAATGTGCGGCTGGACCGGCCCGTGGAAGGTTGCC
TGATAAGTCCCCATGCATACTTGTACCAGAAGGGAGAGAAGGGGCAACAG
CGAGACAAGGAGCGGTTTAACTACCGCTATCGATGGCTGCGAGGACCCGA
GCGTCCAGTGTGTGCCAACACTGCTTGTCCTAGAGCGCAGTCTTTCAATC
CCATTCAATGGAGTAAGTTCGCCCGGAAAGGCTGCTCCTTCCTGATTCAA
TGCGTCGTGTGCGCCAAATTGAGGTTACCTCGCCATCATAGTGTCTTTTG
CACGCTGCAATGCTTTCAAGACGCATGGAAGAACCACAAACGCATTCATC
AGATGGGCAGAACGCGGAGCGCGAACAGCGGCGCGGATGGCGTGCCCGAC
GCGTCCACGGACCCGCTGCAGGACGGAGAGGAGGAGACCCCGCCCCCCCC
TCCTCTCGACTACCTCACTGCAGACACGAGCGAGGACGACTGGCAGGAGG
TGGGGTCGGAAAGAACCTACTGTCCACAACTCTCTGACATCGGGAGGTGT
CTGAAGCTGGAAATCCGGGTCCTGAACCCCGATGGCTCCTTGTTCTTCGG
GCCCCGCCTGACCGAGACAGAGCCCGTCTTGTCCGCCCCCCCGCCCCCAC
CCCAACGGCCCTTGATGCAGGTGAAGAACTTGGCAGCTGCCGCTGCAGGG
CTGAAGTTTCGGATCGCAACGTACAATATTTTGGCGGAGATCTACGCCAC
GCAAACTATGTACCCATACTGCGACCATTGGACTTTGAATTGGAACTACC
GCAAGGTGAATCTTTTGAGGGAGATGCGCGAGGTGGCAGCGGACGTGTTG
TTCCTGCAGGAGGTGCAAGCGGACCACTACGAGCAAGACATTCTACCGGA
GCTCTCGGAGGAGGGCTATGACGGTCTCTACAAGCATAAGACCCGGGAGA
GCATGGGGGCGTCGGGCAAAGTGGACGGTTGTGCCATTCTCTGGCGGCGC
GGAAAGTTCCGCTTGGCCGGTAAGGAGAGCAAGAAGGGGGGCTGTGCAGA
TATGATGATGGCTGGGTGAATAGAAGCCCAGGAATCGGGAGGGGGGGCGG
GAGAGAGGAGCGGGTGCTTTTGTCTCGAGTTGGCGGTCGGGAGGGGAGGG
CATGAGACCCTGTGGCAAGAGCATTCTCTGCTGACTCTCTCCTCTCCGGA
CCACTCCCTTTCCTTATACACCTTCACTCTCCCGCCCCGGGTGCCTGCAG
AAAAGTACCTGATGGAATTCAACGACTGCGCCCGCAGGCAGGCCTCGGAG
CTGGGGCTGAGCCACGACCAGAAGCACACCTTCCTGACCAGAGTGCTCAA
GGACAACGTTGCCCAGGCGGTGGTGCTGGAGGTGCTGGGACGGCCCCGCG
GGGGTCGACACGGCGGAAGCATGGTCTGCATGGCGAACACACACCTGTAC
TCGCACCCAGAGTTCCCAGACGTGAAGCTCTGGCAGTGTCACCAACTCCT
CCAGTGGCTGGAGGGCCTGACCCTCCCAAGCAACATGCCCCTCGTCCTCT
GCGGGGACTTCAACTCGGAGCCCTCGTCCGCCGTCTACGAGCTGGTCTCG
GCGCAGGTGGTGGGGGCGGACCATCCGGATATGCAGCTCCTCCAACAGCA
AGCCTCCGCCAGCAGCACCGAGGCGACAGAACTGGTGCGCTCAGTCCTTC
TTTCCGAGCAGCACCACCAAGTGGCCCATTCGCTGCTTCTCAAATCCGCC
TACGCGACTCTGCTGGGTGAGGAGCCACGGTTCACGAACTACACCGTCGG
CTACGTGGGTGTGCTTGACTATATCTGGTTCAGCGGCATGCACTGGCGGC
CTCTGACGGTCGCCCCTATCCCCGCCGAGCAGGACTTGGCTTGCACAGGA
GAGGCGCTTCCCAACGCCCTCTATCCCTCCGACCACCTCATGTTGTTTTC
TGACCTGCAATTTGTCGTGGGCGGGGGCGGGGGCGGGGGTGGCGGCGGAG
GACTGGGTGGGGGATTGATGGGAGAGCTTCGAAAGGCGATGCCCGGCCTA
GGGGGGGGGCTCGGAGGCTACATGACACCCACCAAGCAGCAGCAACAGCA
GCTGACGTCATCGCCCTCTTTAACCCGGAAGGGAGTTCGATAG

Coding sequence (CDS) from alignment at CM002456.1:1041938..1044130-

>rna1048 ID=rna1048|Name=rna1048|organism=Nannochloropsis gaditana|type=CDS|length=3924bp|location=Sequence derived from alignment at CM002456.1:1041938..1044130- (Nannochloropsis gaditana)
AAAAGTACCTGATGGAATTCAACGACTGCGCCCGCAGGCAGGCCTCGGAG
CTGGGGCTGAGCCACGACCAGAAGCACACCTTCCTGACCAGAGTGCTCAA
GGACAACGTTGCCCAGGCGGTGGTGCTGGAGGTGCTGGGACGGCCCCGCG
GGGGTCGACACGGCGGAAGCATGGTCTGCATGGCGAACACACACCTGTAC
TCGCACCCAGAGTTCCCAGACGTGAAGCTCTGGCAGTGTCACCAACTCCT
CCAGTGGCTGGAGGGCCTGACCCTCCCAAGCAACATGCCCCTCGTCCTCT
GCGGGGACTTCAACTCGGAGCCCTCGTCCGCCGTCTACGAGCTGGTCTCG
GCGCAGGTGGTGGGGGCGGACCATCCGGATATGCAGCTCCTCCAACAGCA
AGCCTCCGCCAGCAGCACCGAGGCGACAGAACTGGTGCGCTCAGTCCTTC
TTTCCGAGCAGCACCACCAAGTGGCCCATTCGCTGCTTCTCAAATCCGCC
TACGCGACTCTGCTGGGTGAGGAGCCACGGTTCACGAACTACACCGTCGG
CTACGTGGGTGTGCTTGACTATATCTGGTTCAGCGGCATGCACTGGCGGC
CTCTGACGGTCGCCCCTATCCCCGCCGAGCAGGACTTGGCTTGCACAGGA
GAGGCGCTTCCCAACGCCCTCTATCCCTCCGACCACCTCATGTTGTTTTC
TGACCTGCAATTTGTCGTGGGCGGGGGCGGGGGCGGGGGTGGCGGCGGAG
GACTGGGTGGGGGATTGATGGGAGAGCTTCGAAAGGCGATGCCCGGCCTA
GGGGGGGGGCTCGGAGGCTACATGACACCCACCAAGCAGCAGCAACAGCA
GCTGACGTCATCGCCCTCTTTAACCCGGAAGGGAGTTCGATAGATGTCTG
GCACAACCGCTAGCAGCAACAGCCTTGCGGGAACAGGAGGCCTGGGGCCC
TGGATGCTAAATGTGCGGCTGGACCGGCCCGTGGAAGGTTGCCTGATAAG
TCCCCATGCATACTTGTACCAGAAGGGAGAGAAGGGGCAACAGCGAGACA
AGGAGCGGTTTAACTACCGCTATCGATGGCTGCGAGGACCCGAGCGTCCA
GTGTGTGCCAACACTGCTTGTCCTAGAGCGCAGTCTTTCAATCCCATTCA
ATGGAGTAAGTTCGCCCGGAAAGGCTGCTCCTTCCTGATTCAATGCGTCG
TGTGCGCCAAATTGAGGTTACCTCGCCATCATAGTGTCTTTTGCACGCTG
CAATGCTTTCAAGACGCATGGAAGAACCACAAACGCATTCATCAGATGGG
CAGAACGCGGAGCGCGAACAGCGGCGCGGATGGCGTGCCCGACGCGTCCA
CGGACCCGCTGCAGGACGGAGAGGAGGAGACCCCGCCCCCCCCTCCTCTC
GACTACCTCACTGCAGACACGAGCGAGGACGACTGGCAGGAGGTGGGGTC
GGAAAGAACCTACTGTCCACAACTCTCTGACATCGGGAGGTGTCTGAAGC
TGGAAATCCGGGTCCTGAACCCCGATGGCTCCTTGTTCTTCGGGCCCCGC
CTGACCGAGACAGAGCCCGTCTTGTCCGCCCCCCCGCCCCCACCCCAACG
GCCCTTGATGCAGGTGAAGAACTTGGCAGCTGCCGCTGCAGGGCTGAAGT
TTCGGATCGCAACGTACAATATTTTGGCGGAGATCTACGCCACGCAAACT
ATGTACCCATACTGCGACCATTGGACTTTGAATTGGAACTACCGCAAGGT
GAATCTTTTGAGGGAGATGCGCGAGGTGGCAGCGGACGTGTTGTTCCTGC
AGGAGGTGCAAGCGGACCACTACGAGCAAGACATTCTACCGGAGCTCTCG
GAGGAGGGCTATGACGGTCTCTACAAGCATAAGACCCGGGAGAGCATGGG
GGCGTCGGGCAAAGTGGACGGTTGTGCCATTCTCTGGCGGCGCGGAAAGT
TCCGCTTGGCCGAAAAGTACCTGATGGAATTCAACGACTGCGCCCGCAGG
CAGGCCTCGGAGCTGGGGCTGAGCCACGACCAGAAGCACACCTTCCTGAC
CAGAGTGCTCAAGGACAACGTTGCCCAGGCGGTGGTGCTGGAGGTGCTGG
GACGGCCCCGCGGGGGTCGACACGGCGGAAGCATGGTCTGCATGGCGAAC
ACACACCTGTACTCGCACCCAGAGTTCCCAGACGTGAAGCTCTGGCAGTG
TCACCAACTCCTCCAGTGGCTGGAGGGCCTGACCCTCCCAAGCAACATGC
CCCTCGTCCTCTGCGGGGACTTCAACTCGGAGCCCTCGTCCGCCGTCTAC
GAGCTGGTCTCGGCGCAGGTGGTGGGGGCGGACCATCCGGATATGCAGCT
CCTCCAACAGCAAGCCTCCGCCAGCAGCACCGAGGCGACAGAACTGGTGC
GCTCAGTCCTTCTTTCCGAGCAGCACCACCAAGTGGCCCATTCGCTGCTT
CTCAAATCCGCCTACGCGACTCTGCTGGGTGAGGAGCCACGGTTCACGAA
CTACACCGTCGGCTACGTGGGTGTGCTTGACTATATCTGGTTCAGCGGCA
TGCACTGGCGGCCTCTGACGGTCGCCCCTATCCCCGCCGAGCAGGACTTG
GCTTGCACAGGAGAGGCGCTTCCCAACGCCCTCTATCCCTCCGACCACCT
CATGTTGTTTTCTGACCTGCAATTTGTCGTGGGCGGGGGCGGGGGCGGGG
GTGGCGGCGGAGGACTGGGTGGGGGATTGATGGGAGAGCTTCGAAAGGCG
ATGCCCGGCCTAGGGGGGGGGCTCGGAGGCTACATGACACCCACCAAGCA
GCAGCAACAGCAGCTGACGTCATCGCCCTCTTTAACCCGGAAGGGAGTTC
GATAGATGTCTGGCACAACCGCTAGCAGCAACAGCCTTGCGGGAACAGGA
GGCCTGGGGCCCTGGATGCTAAATGTGCGGCTGGACCGGCCCGTGGAAGG
TTGCCTGATAAGTCCCCATGCATACTTGTACCAGAAGGGAGAGAAGGGGC
AACAGCGAGACAAGGAGCGGTTTAACTACCGCTATCGATGGCTGCGAGGA
CCCGAGCGTCCAGTGTGTGCCAACACTGCTTGTCCTAGAGCGCAGTCTTT
CAATCCCATTCAATGGAGTAAGTTCGCCCGGAAAGGCTGCTCCTTCCTGA
TTCAATGCGTCGTGTGCGCCAAATTGAGGTTACCTCGCCATCATAGTGTC
TTTTGCACGCTGCAATGCTTTCAAGACGCATGGAAGAACCACAAACGCAT
TCATCAGATGGGCAGAACGCGGAGCGCGAACAGCGGCGCGGATGGCGTGC
CCGACGCGTCCACGGACCCGCTGCAGGACGGAGAGGAGGAGACCCCGCCC
CCCCCTCCTCTCGACTACCTCACTGCAGACACGAGCGAGGACGACTGGCA
GGAGGTGGGGTCGGAAAGAACCTACTGTCCACAACTCTCTGACATCGGGA
GGTGTCTGAAGCTGGAAATCCGGGTCCTGAACCCCGATGGCTCCTTGTTC
TTCGGGCCCCGCCTGACCGAGACAGAGCCCGTCTTGTCCGCCCCCCCGCC
CCCACCCCAACGGCCCTTGATGCAGGTGAAGAACTTGGCAGCTGCCGCTG
CAGGGCTGAAGTTTCGGATCGCAACGTACAATATTTTGGCGGAGATCTAC
GCCACGCAAACTATGTACCCATACTGCGACCATTGGACTTTGAATTGGAA
CTACCGCAAGGTGAATCTTTTGAGGGAGATGCGCGAGGTGGCAGCGGACG
TGTTGTTCCTGCAGGAGGTGCAAGCGGACCACTACGAGCAAGACATTCTA
CCGGAGCTCTCGGAGGAGGGCTATGACGGTCTCTACAAGCATAAGACCCG
GGAGAGCATGGGGGCGTCGGGCAAAGTGGACGGTTGTGCCATTCTCTGGC
GGCGCGGAAAGTTCCGCTTGGCCG

Synonyms

Publications